Wall clock time and date at job start Tue Mar 31 2020 11:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38349 * 127.15252 * 2 1 4 4 C 1.39783 * 126.56515 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99649 * 0.26816 * 4 3 2 6 6 C 1.40080 * 119.99832 * 180.26793 * 4 3 2 7 7 N 1.30810 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99613 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47116 * 119.99962 * 8 6 4 11 11 H 1.48504 * 109.46815 * 239.99869 * 8 6 4 12 12 N 1.33093 * 106.87096 * 180.22644 * 3 2 1 13 13 N 1.28516 * 109.74376 * 359.77033 * 12 3 2 14 14 C 1.32382 * 110.20750 * 0.02562 * 13 12 3 15 15 S 1.76201 * 126.26105 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99818 * 0.02562 * 15 14 13 17 17 C 1.50704 * 109.46911 * 180.02562 * 16 15 14 18 18 N 1.30104 * 124.94885 * 89.97613 * 17 16 15 19 19 C 1.35784 * 109.64107 * 180.02562 * 18 17 16 20 20 C 1.39748 * 133.59833 * 180.28361 * 19 18 17 21 21 C 1.36607 * 119.88317 * 180.12894 * 20 19 18 22 22 C 1.38778 * 120.66838 * 359.55815 * 21 20 19 23 23 C 1.37852 * 120.45046 * 0.22099 * 22 21 20 24 24 C 1.38828 * 119.69358 * 0.02562 * 23 22 21 25 25 N 1.36031 * 124.94998 * 270.01669 * 17 16 15 26 26 H 0.97005 * 126.35122 * 359.96580 * 25 17 16 27 27 H 1.08997 * 109.47418 * 270.17972 * 1 2 3 28 28 H 1.09006 * 109.46955 * 30.18031 * 1 2 3 29 29 H 1.09002 * 109.47080 * 150.17479 * 1 2 3 30 30 H 0.96995 * 120.00195 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47168 * 60.00024 * 16 15 14 32 32 H 1.08998 * 109.47357 * 300.00152 * 16 15 14 33 33 H 1.07996 * 120.05742 * 359.97438 * 20 19 18 34 34 H 1.07999 * 119.66443 * 179.80383 * 21 20 19 35 35 H 1.07997 * 119.77212 * 180.24772 * 22 21 20 36 36 H 1.07997 * 120.15183 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0053 6 6 2.8768 3.4568 -0.0052 7 7 4.1476 3.1467 -0.0106 8 14 2.3530 5.2500 -0.0038 9 1 0.8704 5.3325 0.0031 10 1 2.8924 5.9223 1.2054 11 1 2.8799 5.9205 -1.2196 12 7 3.5490 0.6413 -0.0050 13 7 3.5370 -0.6438 -0.0032 14 6 2.2904 -1.0894 0.0025 15 16 1.7873 -2.7780 0.0062 16 6 3.4059 -3.5881 0.0010 17 6 3.2191 -5.0836 0.0027 18 7 3.1224 -5.8238 -1.0629 19 6 2.9609 -7.1231 -0.7030 20 6 2.8144 -8.3116 -1.4233 21 6 2.6642 -9.4959 -0.7592 22 6 2.6644 -9.5345 0.6280 23 6 2.8120 -8.3752 1.3592 24 6 2.9608 -7.1616 0.7016 25 7 3.1262 -5.8560 1.1185 26 1 3.1682 -5.5468 2.0370 27 1 -0.3634 0.0032 1.0276 28 1 -0.3633 0.8884 -0.5167 29 1 -0.3633 -0.8916 -0.5111 30 1 4.8179 3.8477 -0.0142 31 1 3.9642 -3.2903 0.8885 32 1 3.9574 -3.2923 -0.8914 33 1 2.8175 -8.2935 -2.5031 34 1 2.5481 -10.4118 -1.3195 35 1 2.5486 -10.4793 1.1382 36 1 2.8118 -8.4109 2.4386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357080864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:41 Heat of formation + Delta-G solvation = 139.659148 kcal Electronic energy + Delta-G solvation = -21845.862818 eV Core-core repulsion = 18457.982836 eV Total energy + Delta-G solvation = -3387.879982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25156 -40.57693 -37.54023 -33.75563 -33.39534 -33.28569 -31.49036 -30.11351 -29.39745 -27.74335 -26.52742 -25.55770 -22.60072 -22.30041 -21.24710 -20.87127 -20.38549 -18.02552 -17.43898 -17.35191 -16.43806 -15.80100 -15.48975 -15.20392 -14.81689 -14.49084 -14.47532 -14.12017 -13.76739 -13.46333 -13.26373 -12.97015 -12.35581 -12.29227 -12.14162 -11.92195 -11.69958 -11.41702 -11.35602 -11.00056 -10.87373 -10.46878 -10.38323 -10.07274 -9.80651 -9.68944 -8.78130 -8.54532 -8.51610 -8.45710 -8.25087 -6.94834 -6.70111 -4.63530 0.67855 1.35012 1.72134 2.56941 2.71825 2.86587 2.92627 3.03878 3.08414 3.29327 3.74224 3.83203 3.93116 4.17424 4.35989 4.40695 4.80543 4.89775 5.01859 5.18356 5.26927 5.27767 5.37045 5.50674 5.58691 5.75310 5.84101 5.89344 6.00475 6.21605 6.33046 6.36712 6.68351 6.70173 6.83614 7.15497 7.18585 7.41972 7.76713 7.81233 8.12814 8.64769 8.79404 10.22314 10.55748 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.044585 B = 0.002435 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.867061 B =11495.780159 C =11695.209524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.348 3.652 4 C -0.445 4.445 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.735 5.735 8 Si 0.921 3.079 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.331 5.331 13 N -0.284 5.284 14 C 0.038 3.962 15 S -0.020 6.020 16 C -0.026 4.026 17 C 0.308 3.692 18 N -0.475 5.475 19 C 0.048 3.952 20 C -0.062 4.062 21 C -0.131 4.131 22 C -0.104 4.104 23 C -0.111 4.111 24 C 0.049 3.951 25 N -0.591 5.591 26 H 0.425 0.575 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.280 0.720 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -17.854 2.927 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.216 5.216 3 C 0.104 3.896 4 C -0.485 4.485 5 H 0.103 0.897 6 C -0.148 4.148 7 N -0.359 5.359 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.179 5.179 13 N -0.130 5.130 14 C -0.333 4.333 15 S 0.206 5.794 16 C -0.176 4.176 17 C 0.040 3.960 18 N -0.196 5.196 19 C -0.071 4.071 20 C -0.081 4.081 21 C -0.152 4.152 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.062 4.062 25 N -0.203 5.203 26 H 0.265 0.735 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.209 -18.025 2.028 18.620 hybrid contribution -0.494 1.454 1.325 2.029 sum -4.702 -16.571 3.353 17.548 Atomic orbital electron populations 1.21512 0.78438 1.02826 1.01648 1.46003 1.06098 1.05169 1.64341 1.21638 0.84696 0.88432 0.94855 1.18159 0.94784 0.86393 1.49198 0.89666 1.25811 0.94341 1.01383 0.93268 1.70008 1.00736 1.35010 1.30141 0.86058 0.79869 0.80902 0.78683 1.18507 1.19710 1.19682 1.75460 1.15276 0.97694 1.29482 1.74525 1.15030 1.07785 1.15662 1.25243 0.91724 0.92466 1.23887 1.84698 1.07291 0.91630 1.95782 1.21681 1.00226 0.86019 1.09650 1.22655 0.98355 0.93761 0.81231 1.70479 1.20893 1.00969 1.27209 1.19153 1.05283 0.92303 0.90381 1.20055 0.98861 0.89262 0.99957 1.20636 1.02651 0.97518 0.94358 1.20868 1.00314 0.97194 0.94029 1.19960 1.04498 0.89250 0.99469 1.18905 1.06056 0.85666 0.95545 1.43050 1.61561 1.05608 1.10039 0.73523 0.92527 0.90238 0.91505 0.90942 0.86866 0.85288 0.85257 0.85403 0.85351 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.87 59.85 0.65 2.46 16 2 N -0.51 -12.17 3.26 -123.17 -0.40 -12.58 16 3 C 0.35 9.55 7.53 -154.82 -1.17 8.39 16 4 C -0.45 -11.59 9.05 -38.31 -0.35 -11.93 16 5 H 0.09 2.01 7.31 -52.49 -0.38 1.63 16 6 C 0.08 1.95 5.50 -17.30 -0.10 1.86 16 7 N -0.74 -19.90 11.94 55.56 0.66 -19.24 16 8 Si 0.92 18.23 29.56 -169.99 -5.03 13.20 16 9 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 N -0.33 -9.78 10.48 31.26 0.33 -9.45 16 13 N -0.28 -7.55 11.62 30.89 0.36 -7.19 16 14 C 0.04 0.90 8.09 -87.28 -0.71 0.19 16 15 S -0.02 -0.35 21.77 -107.50 -2.34 -2.69 16 16 C -0.03 -0.40 5.85 36.01 0.21 -0.19 16 17 C 0.31 4.51 7.33 -154.83 -1.14 3.38 16 18 N -0.47 -7.71 11.27 -8.23 -0.09 -7.80 16 19 C 0.05 0.68 7.23 -84.70 -0.61 0.07 16 20 C -0.06 -0.71 10.05 -39.61 -0.40 -1.11 16 21 C -0.13 -1.17 9.96 -39.97 -0.40 -1.57 16 22 C -0.10 -0.87 10.03 -39.52 -0.40 -1.27 16 23 C -0.11 -1.06 10.07 -39.50 -0.40 -1.46 16 24 C 0.05 0.61 7.31 -83.99 -0.61 -0.01 16 25 N -0.59 -7.06 6.23 -8.00 -0.05 -7.11 16 26 H 0.43 3.79 8.96 -40.82 -0.37 3.43 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 29 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.11 1.68 8.14 -51.91 -0.42 1.26 16 32 H 0.13 2.21 8.14 -51.92 -0.42 1.78 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -34.19 332.91 -10.59 -44.78 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.64 Total: 4.25 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -5.40 Total: -1.19 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.81 Total: -63.37 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.34 Total: -2.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.19 -10.59 -44.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.437 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds