Wall clock time and date at job start Tue Mar 31 2020 11:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38349 * 127.15252 * 2 1 4 4 C 1.39783 * 126.56515 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99649 * 0.26816 * 4 3 2 6 6 C 1.40080 * 119.99832 * 180.26793 * 4 3 2 7 7 N 1.30810 * 120.00243 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99613 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47116 * 119.99962 * 8 6 4 11 11 H 1.48504 * 109.46815 * 239.99869 * 8 6 4 12 12 N 1.33093 * 106.87096 * 180.22644 * 3 2 1 13 13 N 1.28516 * 109.74376 * 359.77033 * 12 3 2 14 14 C 1.32382 * 110.20750 * 0.02562 * 13 12 3 15 15 S 1.76201 * 126.26105 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99818 * 0.02562 * 15 14 13 17 17 C 1.50704 * 109.46911 * 180.02562 * 16 15 14 18 18 N 1.30104 * 124.94885 * 89.97613 * 17 16 15 19 19 C 1.35784 * 109.64107 * 180.02562 * 18 17 16 20 20 C 1.39748 * 133.59833 * 180.28361 * 19 18 17 21 21 C 1.36607 * 119.88317 * 180.12894 * 20 19 18 22 22 C 1.38778 * 120.66838 * 359.55815 * 21 20 19 23 23 C 1.37852 * 120.45046 * 0.22099 * 22 21 20 24 24 C 1.38828 * 119.69358 * 0.02562 * 23 22 21 25 25 N 1.36031 * 124.94998 * 270.01669 * 17 16 15 26 26 H 0.97005 * 126.35122 * 359.96580 * 25 17 16 27 27 H 1.08997 * 109.47418 * 270.17972 * 1 2 3 28 28 H 1.09006 * 109.46955 * 30.18031 * 1 2 3 29 29 H 1.09002 * 109.47080 * 150.17479 * 1 2 3 30 30 H 0.96995 * 120.00195 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47168 * 60.00024 * 16 15 14 32 32 H 1.08998 * 109.47357 * 300.00152 * 16 15 14 33 33 H 1.07996 * 120.05742 * 359.97438 * 20 19 18 34 34 H 1.07999 * 119.66443 * 179.80383 * 21 20 19 35 35 H 1.07997 * 119.77212 * 180.24772 * 22 21 20 36 36 H 1.07997 * 120.15183 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0053 6 6 2.8768 3.4568 -0.0052 7 7 4.1476 3.1467 -0.0106 8 14 2.3530 5.2500 -0.0038 9 1 0.8704 5.3325 0.0031 10 1 2.8924 5.9223 1.2054 11 1 2.8799 5.9205 -1.2196 12 7 3.5490 0.6413 -0.0050 13 7 3.5370 -0.6438 -0.0032 14 6 2.2904 -1.0894 0.0025 15 16 1.7873 -2.7780 0.0062 16 6 3.4059 -3.5881 0.0010 17 6 3.2191 -5.0836 0.0027 18 7 3.1224 -5.8238 -1.0629 19 6 2.9609 -7.1231 -0.7030 20 6 2.8144 -8.3116 -1.4233 21 6 2.6642 -9.4959 -0.7592 22 6 2.6644 -9.5345 0.6280 23 6 2.8120 -8.3752 1.3592 24 6 2.9608 -7.1616 0.7016 25 7 3.1262 -5.8560 1.1185 26 1 3.1682 -5.5468 2.0370 27 1 -0.3634 0.0032 1.0276 28 1 -0.3633 0.8884 -0.5167 29 1 -0.3633 -0.8916 -0.5111 30 1 4.8179 3.8477 -0.0142 31 1 3.9642 -3.2903 0.8885 32 1 3.9574 -3.2923 -0.8914 33 1 2.8175 -8.2935 -2.5031 34 1 2.5481 -10.4118 -1.3195 35 1 2.5486 -10.4793 1.1382 36 1 2.8118 -8.4109 2.4386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357080864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:40 Heat of formation + Delta-G solvation = 118.564094 kcal Electronic energy + Delta-G solvation = -21846.777568 eV Core-core repulsion = 18457.982836 eV Total energy + Delta-G solvation = -3388.794732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.20873 -42.48198 -38.34907 -35.64027 -35.18408 -34.24887 -32.61707 -31.31598 -30.92874 -28.81655 -28.16833 -27.38710 -23.45454 -23.23672 -22.81943 -22.53637 -21.87742 -19.30305 -18.92265 -18.27214 -17.92184 -17.32760 -16.84150 -16.59169 -16.19826 -16.07685 -15.33110 -15.25390 -14.97398 -14.93091 -14.50287 -14.21750 -13.93627 -13.82886 -13.18814 -12.97612 -12.85955 -12.79861 -12.74458 -12.48767 -12.07540 -11.93891 -11.77076 -11.70057 -11.48354 -11.06950 -10.61067 -10.40776 -10.31982 -9.38211 -9.15268 -8.62428 -8.55557 -6.60216 -0.32300 0.38451 0.56587 1.00719 1.17049 1.42237 1.59625 1.60060 1.74764 1.87783 2.18107 2.42861 2.48654 2.86812 2.90596 3.32988 3.50840 3.86277 4.05423 4.07054 4.18863 4.38955 4.43013 4.44286 4.49138 4.50144 4.61086 4.85217 4.86533 4.94189 5.12277 5.30819 5.41687 5.53781 5.54343 5.58692 5.95166 6.00352 6.21285 6.28444 6.74775 6.75999 6.89998 8.40008 8.61200 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.044585 B = 0.002435 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.867061 B =11495.780159 C =11695.209524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.520 5.520 3 C 0.318 3.682 4 C -0.468 4.468 5 H 0.104 0.896 6 C 0.028 3.972 7 N -0.787 5.787 8 Si 1.007 2.993 9 H -0.245 1.245 10 H -0.267 1.267 11 H -0.268 1.268 12 N -0.386 5.386 13 N -0.325 5.325 14 C 0.050 3.950 15 S 0.025 5.975 16 C -0.018 4.018 17 C 0.292 3.708 18 N -0.507 5.507 19 C 0.008 3.992 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.092 4.092 23 C -0.116 4.116 24 C 0.041 3.959 25 N -0.579 5.579 26 H 0.438 0.562 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.285 0.715 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 -19.948 3.955 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.221 5.221 3 C 0.072 3.928 4 C -0.509 4.509 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.412 5.412 8 Si 0.825 3.175 9 H -0.168 1.168 10 H -0.192 1.192 11 H -0.193 1.193 12 N -0.233 5.233 13 N -0.170 5.170 14 C -0.323 4.323 15 S 0.251 5.749 16 C -0.168 4.168 17 C 0.024 3.976 18 N -0.229 5.229 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.111 4.111 23 C -0.136 4.136 24 C -0.070 4.070 25 N -0.192 5.192 26 H 0.280 0.720 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.328 -20.137 3.075 21.330 hybrid contribution 0.104 1.699 0.997 1.973 sum -6.224 -18.437 4.072 19.881 Atomic orbital electron populations 1.21869 0.75259 1.04452 1.03457 1.46340 1.08076 1.04291 1.63433 1.22056 0.85061 0.89916 0.95742 1.18660 0.96020 0.86396 1.49788 0.87799 1.26991 0.93930 1.06494 0.91844 1.70151 1.02404 1.36988 1.31641 0.84804 0.80156 0.73829 0.78671 1.16780 1.19188 1.19317 1.75321 1.17299 0.99052 1.31636 1.74403 1.16955 1.07205 1.18440 1.26258 0.91241 0.95205 1.19641 1.84506 1.08232 0.87107 1.95074 1.21567 0.98997 0.87129 1.09138 1.22157 1.00434 0.92926 0.82124 1.70353 1.21526 1.02549 1.28520 1.19593 1.07349 0.92184 0.91966 1.20328 1.00016 0.89517 1.00431 1.21077 1.00276 0.97605 0.95084 1.21410 0.97578 0.98291 0.93869 1.20400 1.03823 0.88340 1.01084 1.19265 1.06225 0.86361 0.95126 1.42912 1.60818 1.05425 1.10020 0.72026 0.90526 0.89212 0.89325 0.90489 0.86197 0.87132 0.85071 0.82168 0.81492 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.19 10.87 127.77 1.39 4.58 16 2 N -0.52 -24.86 3.26 -543.60 -1.77 -26.63 16 3 C 0.32 18.05 7.53 133.24 1.00 19.05 16 4 C -0.47 -24.80 9.05 23.09 0.21 -24.59 16 5 H 0.10 4.86 7.31 -2.91 -0.02 4.84 16 6 C 0.03 1.45 5.50 85.29 0.47 1.91 16 7 N -0.79 -44.34 11.94 21.85 0.26 -44.08 16 8 Si 1.01 37.42 29.56 68.60 2.03 39.45 16 9 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 10 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 12 N -0.39 -23.94 10.48 -55.02 -0.58 -24.52 16 13 N -0.33 -18.12 11.62 -56.18 -0.65 -18.77 16 14 C 0.05 2.39 8.09 179.18 1.45 3.84 16 15 S 0.03 0.89 21.77 -56.49 -1.23 -0.34 16 16 C -0.02 -0.59 5.85 71.24 0.42 -0.17 16 17 C 0.29 8.67 7.33 137.93 1.01 9.68 16 18 N -0.51 -16.85 11.27 -179.96 -2.03 -18.88 16 19 C 0.01 0.21 7.23 39.45 0.29 0.50 16 20 C -0.08 -1.82 10.05 22.25 0.22 -1.59 16 21 C -0.12 -1.74 9.96 22.02 0.22 -1.52 16 22 C -0.09 -1.14 10.03 22.31 0.22 -0.92 16 23 C -0.12 -1.84 10.07 22.32 0.22 -1.61 16 24 C 0.04 0.96 7.31 38.86 0.28 1.24 16 25 N -0.58 -13.42 6.23 -179.24 -1.12 -14.54 16 26 H 0.44 7.34 8.96 -92.70 -0.83 6.51 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.09 2.90 7.54 -2.38 -0.02 2.89 16 29 H 0.09 2.65 7.85 -2.39 -0.02 2.63 16 30 H 0.28 14.44 8.30 -92.71 -0.77 13.67 16 31 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 33 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -79.44 332.91 2.63 -76.81 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.31 Total: 21.09 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.41 Total: 10.40 kcal Atomic # 7 Polarization: -141.53 SS G_CDS: -5.88 Total: -147.41 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -1.23 Total: -0.34 kcal Total: -79.44 2.63 -76.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.374 kcal (2) G-P(sol) polarization free energy of solvation -79.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds