Wall clock time and date at job start Tue Mar 31 2020 10:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00110 * 2 1 4 4 N 1.46501 * 109.47396 * 124.99622 * 3 2 1 5 5 C 1.46493 * 119.99840 * 274.96473 * 4 3 2 6 6 C 1.50697 * 109.47224 * 269.99812 * 5 4 3 7 7 H 1.08003 * 120.00347 * 0.02562 * 6 5 4 8 8 C 1.37887 * 120.00113 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99873 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99520 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46771 * 90.00689 * 10 8 6 12 12 H 1.48507 * 109.46681 * 209.99928 * 10 8 6 13 13 H 1.48489 * 109.47622 * 329.99967 * 10 8 6 14 14 C 1.34771 * 120.00078 * 94.96820 * 4 3 2 15 15 O 1.21587 * 120.00145 * 185.56384 * 14 4 3 16 16 C 1.47591 * 119.99946 * 5.55662 * 14 4 3 17 17 C 1.39773 * 120.11258 * 55.03270 * 16 14 4 18 18 C 1.37960 * 119.96890 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.90356 * 179.97438 * 18 17 16 20 20 C 1.38837 * 120.19564 * 359.74065 * 18 17 16 21 21 F 1.35100 * 119.88781 * 180.25355 * 20 18 17 22 22 C 1.38829 * 120.22460 * 0.51699 * 20 18 17 23 23 O 1.36023 * 119.98352 * 179.76422 * 22 20 18 24 24 C 1.38651 * 120.03256 * 359.48352 * 22 20 18 25 25 F 1.35103 * 120.10027 * 180.23514 * 24 22 20 26 26 H 1.08002 * 119.99573 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99943 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99685 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46968 * 4.99129 * 3 2 1 30 30 H 1.09003 * 109.46873 * 244.99988 * 3 2 1 31 31 H 1.09004 * 109.47573 * 30.00293 * 5 4 3 32 32 H 1.09007 * 109.47188 * 149.99931 * 5 4 3 33 33 H 0.97004 * 119.99488 * 179.97438 * 9 8 6 34 34 H 1.08004 * 120.01783 * 359.97438 * 17 16 14 35 35 H 0.96704 * 114.00049 * 269.71637 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5286 1.7629 2.4520 6 6 2.7147 3.2521 2.5888 7 1 3.1370 3.8208 1.7735 8 6 2.3461 3.8888 3.7550 9 7 2.5081 5.1884 3.8742 10 14 1.6151 2.9053 5.1650 11 1 2.7047 2.4361 6.0584 12 1 0.6793 3.7641 5.9346 13 1 0.8803 1.7342 4.6232 14 6 4.2774 0.9602 0.9574 15 8 5.0237 0.8852 1.9144 16 6 4.7773 0.6440 -0.3948 17 6 4.6456 1.5771 -1.4270 18 6 5.1134 1.2782 -2.6900 19 9 4.9850 2.1809 -3.6870 20 6 5.7202 0.0544 -2.9384 21 9 6.1807 -0.2298 -4.1763 22 6 5.8504 -0.8805 -1.9204 23 8 6.4414 -2.0799 -2.1704 24 6 5.3836 -0.5900 -0.6475 25 9 5.5139 -1.4969 0.3453 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6213 1.4025 -0.9314 31 1 1.4725 1.5170 2.5634 32 1 3.1039 1.2524 3.2244 33 1 2.2483 5.6363 4.6945 34 1 4.1771 2.5313 -1.2363 35 1 5.8260 -2.7704 -2.4525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359378111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:55 Heat of formation + Delta-G solvation = -145.592752 kcal Electronic energy + Delta-G solvation = -26470.300954 eV Core-core repulsion = 22020.856407 eV Total energy + Delta-G solvation = -4449.444546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.84878 -49.20482 -48.91091 -40.22722 -38.97082 -36.90998 -35.99987 -33.31063 -32.31387 -30.98618 -30.12537 -28.29288 -25.93613 -24.45344 -23.59875 -22.29109 -20.30847 -19.79958 -18.58368 -18.49422 -18.45325 -17.33143 -17.00859 -16.79245 -16.66107 -16.10747 -15.78749 -15.67202 -15.28396 -14.96232 -14.91298 -14.60363 -14.48924 -14.23349 -13.79329 -13.37840 -13.21794 -12.97368 -12.47134 -12.24909 -12.08875 -11.79576 -11.57578 -11.40786 -11.34229 -11.04516 -10.61263 -10.24846 -9.74595 -9.53338 -9.45941 -9.14835 -8.98703 -8.67137 -7.98865 -6.17515 -4.17927 0.13200 0.31631 2.24160 2.43126 2.87059 3.03567 3.24382 3.30239 3.32778 3.48273 3.57740 3.71773 4.02883 4.20223 4.32207 4.34850 4.88536 4.95339 5.07141 5.16346 5.22063 5.26766 5.37649 5.42571 5.51029 5.84135 5.98693 6.06582 6.53906 6.61939 6.72617 6.81655 6.96335 7.10638 7.48699 7.90600 8.32400 8.57262 8.83721 9.41716 10.95317 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.004225 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.113866 B = 6625.012136 C = 6756.996096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.172 4.172 3 C 0.124 3.876 4 N -0.575 5.575 5 C 0.216 3.784 6 C -0.536 4.536 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.554 3.446 15 O -0.512 6.512 16 C -0.113 4.113 17 C -0.076 4.076 18 C 0.074 3.926 19 F -0.116 7.116 20 C 0.082 3.918 21 F -0.111 7.111 22 C 0.063 3.937 23 O -0.467 6.467 24 C 0.138 3.862 25 F -0.103 7.103 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.172 0.828 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -12.771 -15.227 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.191 4.191 3 C 0.001 3.999 4 N -0.305 5.305 5 C 0.097 3.903 6 C -0.574 4.574 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.339 3.661 15 O -0.387 6.387 16 C -0.117 4.117 17 C -0.095 4.095 18 C 0.054 3.946 19 F -0.094 7.094 20 C 0.060 3.940 21 F -0.090 7.090 22 C 0.016 3.984 23 O -0.277 6.277 24 C 0.117 3.883 25 F -0.081 7.081 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.189 0.811 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.671 -12.360 -14.435 19.016 hybrid contribution -0.683 -0.695 0.340 1.033 sum -0.012 -13.055 -14.095 19.212 Atomic orbital electron populations 1.23869 0.95744 1.02026 0.99821 1.23350 0.96434 0.98759 1.00548 1.20901 0.93284 0.96048 0.89682 1.47846 1.07502 1.63045 1.12060 1.19773 0.95075 0.96434 0.79048 1.21270 1.43165 0.90353 1.02610 0.90562 1.24819 0.95042 0.94788 0.98044 1.69883 1.47428 1.08403 1.27412 0.86882 0.79694 0.80353 0.83014 1.19774 1.20956 1.18947 1.17602 0.83140 0.78917 0.86480 1.90845 1.55659 1.51797 1.40419 1.20140 1.01770 0.93230 0.96606 1.21195 0.98307 1.01199 0.88778 1.17203 1.03668 0.87088 0.86681 1.91591 1.93907 1.65067 1.58834 1.17748 1.01066 0.94087 0.81057 1.91564 1.86129 1.93518 1.37739 1.17752 1.01367 0.89182 0.90111 1.84966 1.35873 1.17904 1.88988 1.17619 0.98320 0.87510 0.84869 1.91610 1.93058 1.64676 1.58801 0.88017 0.88573 0.87797 0.88633 0.89992 0.94615 0.94130 0.92400 0.81089 0.74471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 14.32 29.01 0.42 -1.58 16 2 C -0.17 -2.17 9.84 -36.03 -0.35 -2.53 16 3 C 0.12 1.79 5.67 -5.19 -0.03 1.76 16 4 N -0.57 -11.01 2.44 -177.65 -0.43 -11.45 16 5 C 0.22 5.01 4.29 -5.20 -0.02 4.99 16 6 C -0.54 -14.55 9.94 -34.44 -0.34 -14.89 16 7 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 10 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 14 C 0.55 10.83 6.84 -12.45 -0.09 10.75 16 15 O -0.51 -12.26 16.45 5.29 0.09 -12.18 16 16 C -0.11 -1.68 4.90 -104.93 -0.51 -2.19 16 17 C -0.08 -0.93 7.45 -39.11 -0.29 -1.23 16 18 C 0.07 0.85 7.29 -39.46 -0.29 0.56 16 19 F -0.12 -1.35 17.17 2.25 0.04 -1.31 16 20 C 0.08 0.92 7.32 -39.14 -0.29 0.63 16 21 F -0.11 -1.27 17.01 2.25 0.04 -1.23 16 22 C 0.06 0.73 6.71 -39.21 -0.26 0.46 16 23 O -0.47 -4.62 13.22 -19.81 -0.26 -4.88 16 24 C 0.14 1.90 7.28 -38.85 -0.28 1.61 16 25 F -0.10 -1.60 16.52 2.25 0.04 -1.56 16 26 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 27 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.10 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.10 1.41 7.76 -51.93 -0.40 1.01 16 30 H 0.08 0.98 4.42 -51.93 -0.23 0.75 16 31 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 32 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.17 2.00 7.57 -52.48 -0.40 1.61 16 35 H 0.40 1.80 9.07 45.56 0.41 2.22 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -33.24 325.34 -4.11 -37.36 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -2.19 Total: -0.41 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.44 Total: 0.40 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.34 Total: -37.25 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.17 Total: -17.06 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.11 Total: -4.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.24 -4.11 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.237 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds