Wall clock time and date at job start Tue Mar 31 2020 10:48:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50697 * 120.00110 * 2 1
4 4 N 1.46501 * 109.47396 * 124.99622 * 3 2 1
5 5 C 1.46493 * 119.99840 * 274.96473 * 4 3 2
6 6 C 1.50697 * 109.47224 * 269.99812 * 5 4 3
7 7 H 1.08003 * 120.00347 * 0.02562 * 6 5 4
8 8 C 1.37887 * 120.00113 * 180.02562 * 6 5 4
9 9 N 1.31509 * 119.99873 * 180.02562 * 8 6 5
10 10 Si 1.86803 * 119.99520 * 359.97438 * 8 6 5
11 11 H 1.48505 * 109.46771 * 90.00689 * 10 8 6
12 12 H 1.48507 * 109.46681 * 209.99928 * 10 8 6
13 13 H 1.48489 * 109.47622 * 329.99967 * 10 8 6
14 14 C 1.34771 * 120.00078 * 94.96820 * 4 3 2
15 15 O 1.21587 * 120.00145 * 185.56384 * 14 4 3
16 16 C 1.47591 * 119.99946 * 5.55662 * 14 4 3
17 17 C 1.39773 * 120.11258 * 55.03270 * 16 14 4
18 18 C 1.37960 * 119.96890 * 180.02562 * 17 16 14
19 19 F 1.35102 * 119.90356 * 179.97438 * 18 17 16
20 20 C 1.38837 * 120.19564 * 359.74065 * 18 17 16
21 21 F 1.35100 * 119.88781 * 180.25355 * 20 18 17
22 22 C 1.38829 * 120.22460 * 0.51699 * 20 18 17
23 23 O 1.36023 * 119.98352 * 179.76422 * 22 20 18
24 24 C 1.38651 * 120.03256 * 359.48352 * 22 20 18
25 25 F 1.35103 * 120.10027 * 180.23514 * 24 22 20
26 26 H 1.08002 * 119.99573 * 0.02562 * 1 2 3
27 27 H 1.07999 * 119.99943 * 180.02562 * 1 2 3
28 28 H 1.08002 * 119.99685 * 179.97438 * 2 1 3
29 29 H 1.08999 * 109.46968 * 4.99129 * 3 2 1
30 30 H 1.09003 * 109.46873 * 244.99988 * 3 2 1
31 31 H 1.09004 * 109.47573 * 30.00293 * 5 4 3
32 32 H 1.09007 * 109.47188 * 149.99931 * 5 4 3
33 33 H 0.97004 * 119.99488 * 179.97438 * 9 8 6
34 34 H 1.08004 * 120.01783 * 359.97438 * 17 16 14
35 35 H 0.96704 * 114.00049 * 269.71637 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3319 1.1315
5 6 2.5286 1.7629 2.4520
6 6 2.7147 3.2521 2.5888
7 1 3.1370 3.8208 1.7735
8 6 2.3461 3.8888 3.7550
9 7 2.5081 5.1884 3.8742
10 14 1.6151 2.9053 5.1650
11 1 2.7047 2.4361 6.0584
12 1 0.6793 3.7641 5.9346
13 1 0.8803 1.7342 4.6232
14 6 4.2774 0.9602 0.9574
15 8 5.0237 0.8852 1.9144
16 6 4.7773 0.6440 -0.3948
17 6 4.6456 1.5771 -1.4270
18 6 5.1134 1.2782 -2.6900
19 9 4.9850 2.1809 -3.6870
20 6 5.7202 0.0544 -2.9384
21 9 6.1807 -0.2298 -4.1763
22 6 5.8504 -0.8805 -1.9204
23 8 6.4414 -2.0799 -2.1704
24 6 5.3836 -0.5900 -0.6475
25 9 5.5139 -1.4969 0.3453
26 1 -0.5399 0.9354 -0.0004
27 1 -0.5400 -0.9353 0.0004
28 1 1.8500 -0.9354 0.0004
29 1 1.3586 2.1316 0.0894
30 1 2.6213 1.4025 -0.9314
31 1 1.4725 1.5170 2.5634
32 1 3.1039 1.2524 3.2244
33 1 2.2483 5.6363 4.6945
34 1 4.1771 2.5313 -1.2363
35 1 5.8260 -2.7704 -2.4525
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000359378111.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:54
Heat of formation + Delta-G solvation = -168.586426 kcal
Electronic energy + Delta-G solvation = -26471.298034 eV
Core-core repulsion = 22020.856407 eV
Total energy + Delta-G solvation = -4450.441627 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-50.79606 -50.32518 -49.85771 -41.50635 -40.10516 -37.91605 -37.43583 -35.05594
-33.84681 -32.21881 -31.13009 -30.01864 -27.16826 -25.85080 -24.63886 -23.86582
-21.50734 -20.85335 -19.71984 -19.53300 -19.46580 -19.06265 -18.38300 -17.95039
-17.76283 -17.47968 -16.85806 -16.83496 -16.33090 -16.26234 -16.02913 -15.85345
-15.65466 -15.53384 -14.96597 -14.86890 -14.48957 -14.28135 -14.14245 -13.64669
-13.34253 -13.20025 -12.99924 -12.72805 -12.50959 -12.31798 -12.28681 -11.96091
-11.73748 -11.13850 -10.82676 -10.46564 -10.16656 -10.01303 -9.59906 -8.33613
-6.39028 -0.90704 -0.65459 1.21013 1.29775 1.35264 1.38154 1.45860
1.74509 1.85289 2.19590 2.31382 2.58496 2.77344 2.99724 3.01357
3.10330 3.25232 3.88332 3.96384 4.04838 4.16593 4.26498 4.35140
4.37157 4.49578 4.74391 4.79425 4.89041 5.04840 5.12973 5.37501
5.43998 5.69903 5.86713 6.19856 6.37618 6.40335 6.62644 7.01369
7.26150 8.82487
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.017047 B = 0.004225 C = 0.004143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1642.113866 B = 6625.012136 C = 6756.996096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.189 4.189
3 C 0.120 3.880
4 N -0.578 5.578
5 C 0.226 3.774
6 C -0.538 4.538
7 H 0.039 0.961
8 C 0.018 3.982
9 N -0.940 5.940
10 Si 0.939 3.061
11 H -0.278 1.278
12 H -0.275 1.275
13 H -0.238 1.238
14 C 0.550 3.450
15 O -0.569 6.569
16 C -0.123 4.123
17 C -0.070 4.070
18 C 0.089 3.911
19 F -0.113 7.113
20 C 0.094 3.906
21 F -0.107 7.107
22 C 0.089 3.911
23 O -0.472 6.472
24 C 0.130 3.870
25 F -0.117 7.117
26 H 0.104 0.896
27 H 0.118 0.882
28 H 0.110 0.890
29 H 0.090 0.910
30 H 0.106 0.894
31 H 0.054 0.946
32 H 0.022 0.978
33 H 0.269 0.731
34 H 0.175 0.825
35 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.276 -14.797 -16.810 22.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.208 4.208
3 C -0.002 4.002
4 N -0.307 5.307
5 C 0.104 3.896
6 C -0.576 4.576
7 H 0.057 0.943
8 C -0.181 4.181
9 N -0.580 5.580
10 Si 0.762 3.238
11 H -0.204 1.204
12 H -0.201 1.201
13 H -0.161 1.161
14 C 0.337 3.663
15 O -0.449 6.449
16 C -0.127 4.127
17 C -0.089 4.089
18 C 0.069 3.931
19 F -0.091 7.091
20 C 0.073 3.927
21 F -0.085 7.085
22 C 0.041 3.959
23 O -0.287 6.287
24 C 0.109 3.891
25 F -0.095 7.095
26 H 0.122 0.878
27 H 0.137 0.863
28 H 0.128 0.872
29 H 0.108 0.892
30 H 0.123 0.877
31 H 0.072 0.928
32 H 0.040 0.960
33 H 0.078 0.922
34 H 0.192 0.808
35 H 0.286 0.714
Dipole moment (debyes) X Y Z Total
from point charges -0.427 -14.420 -16.090 21.610
hybrid contribution -0.315 -0.067 0.670 0.744
sum -0.742 -14.487 -15.419 21.170
Atomic orbital electron populations
1.24108 0.95259 1.03248 0.97133 1.23218 0.96873 0.97794 1.02928
1.21155 0.92848 0.97235 0.88922 1.47879 1.08442 1.62344 1.11987
1.19412 0.95664 0.93464 0.81042 1.21501 1.42172 0.92360 1.01573
0.94261 1.25725 0.95626 0.95739 1.00971 1.70024 1.49191 1.10341
1.28458 0.85844 0.78980 0.79705 0.79268 1.20351 1.20056 1.16104
1.18204 0.82640 0.77640 0.87778 1.90799 1.57006 1.54287 1.42784
1.19652 1.03696 0.94727 0.94645 1.21071 0.98442 1.00757 0.88618
1.17003 1.02998 0.87030 0.86107 1.91607 1.93823 1.65087 1.58614
1.17650 1.00338 0.93680 0.81029 1.91587 1.85981 1.93446 1.37477
1.17476 0.99676 0.89834 0.88929 1.84917 1.36855 1.17972 1.88907
1.17695 0.98974 0.86987 0.85441 1.91574 1.93273 1.65045 1.59616
0.87778 0.86338 0.87181 0.89215 0.87667 0.92808 0.96034 0.92224
0.80771 0.71403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.14 14.32 67.78 0.97 -2.17 16
2 C -0.19 -4.40 9.84 25.64 0.25 -4.15 16
3 C 0.12 3.36 5.67 85.63 0.49 3.84 16
4 N -0.58 -22.36 2.44 -834.22 -2.04 -24.39 16
5 C 0.23 10.54 4.29 85.63 0.37 10.91 16
6 C -0.54 -30.08 9.94 25.60 0.25 -29.82 16
7 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16
8 C 0.02 1.04 5.47 84.66 0.46 1.50 16
9 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16
10 Si 0.94 43.07 27.47 68.60 1.88 44.96 16
11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16
13 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16
14 C 0.55 22.01 6.84 86.71 0.59 22.60 16
15 O -0.57 -28.42 16.45 -3.99 -0.07 -28.49 16
16 C -0.12 -3.60 4.90 -20.06 -0.10 -3.70 16
17 C -0.07 -1.65 7.45 22.58 0.17 -1.48 16
18 C 0.09 1.84 7.29 22.35 0.16 2.00 16
19 F -0.11 -2.37 17.17 44.97 0.77 -1.60 16
20 C 0.09 1.86 7.32 22.55 0.17 2.03 16
21 F -0.11 -2.10 17.01 44.97 0.76 -1.33 16
22 C 0.09 1.82 6.71 22.51 0.15 1.97 16
23 O -0.47 -7.91 13.22 -93.81 -1.24 -9.15 16
24 C 0.13 3.43 7.28 22.74 0.17 3.60 16
25 F -0.12 -3.57 16.52 44.97 0.74 -2.82 16
26 H 0.10 2.00 7.84 -2.91 -0.02 1.98 16
27 H 0.12 1.83 8.06 -2.91 -0.02 1.80 16
28 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16
29 H 0.09 2.60 7.76 -2.39 -0.02 2.58 16
30 H 0.11 2.39 4.42 -2.39 -0.01 2.38 16
31 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16
32 H 0.02 1.10 6.78 -2.38 -0.02 1.08 16
33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
34 H 0.17 3.99 7.57 -2.91 -0.02 3.97 16
35 H 0.42 2.36 9.07 -74.05 -0.67 1.69 16
Total: -1.00 -74.30 325.34 5.67 -68.63
By element:
Atomic # 1 Polarization: 3.90 SS G_CDS: 0.45 Total: 4.34 kcal
Atomic # 6 Polarization: 3.02 SS G_CDS: 4.10 Total: 7.12 kcal
Atomic # 7 Polarization: -79.92 SS G_CDS: -1.74 Total: -81.66 kcal
Atomic # 8 Polarization: -36.33 SS G_CDS: -1.31 Total: -37.64 kcal
Atomic # 9 Polarization: -8.03 SS G_CDS: 2.28 Total: -5.75 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal
Total: -74.30 5.67 -68.63 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359378111.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.954 kcal
(2) G-P(sol) polarization free energy of solvation -74.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) -168.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds