Wall clock time and date at job start Tue Mar 31 2020 10:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00110 * 2 1 4 4 N 1.46501 * 109.47396 * 124.99622 * 3 2 1 5 5 C 1.46493 * 119.99840 * 274.96473 * 4 3 2 6 6 C 1.50697 * 109.47224 * 269.99812 * 5 4 3 7 7 H 1.08003 * 120.00347 * 0.02562 * 6 5 4 8 8 C 1.37887 * 120.00113 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99873 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99520 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46771 * 90.00689 * 10 8 6 12 12 H 1.48507 * 109.46681 * 209.99928 * 10 8 6 13 13 H 1.48489 * 109.47622 * 329.99967 * 10 8 6 14 14 C 1.34771 * 120.00078 * 94.96820 * 4 3 2 15 15 O 1.21587 * 120.00145 * 185.56384 * 14 4 3 16 16 C 1.47591 * 119.99946 * 5.55662 * 14 4 3 17 17 C 1.39773 * 120.11258 * 55.03270 * 16 14 4 18 18 C 1.37960 * 119.96890 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.90356 * 179.97438 * 18 17 16 20 20 C 1.38837 * 120.19564 * 359.74065 * 18 17 16 21 21 F 1.35100 * 119.88781 * 180.25355 * 20 18 17 22 22 C 1.38829 * 120.22460 * 0.51699 * 20 18 17 23 23 O 1.36023 * 119.98352 * 179.76422 * 22 20 18 24 24 C 1.38651 * 120.03256 * 359.48352 * 22 20 18 25 25 F 1.35103 * 120.10027 * 180.23514 * 24 22 20 26 26 H 1.08002 * 119.99573 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99943 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99685 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46968 * 4.99129 * 3 2 1 30 30 H 1.09003 * 109.46873 * 244.99988 * 3 2 1 31 31 H 1.09004 * 109.47573 * 30.00293 * 5 4 3 32 32 H 1.09007 * 109.47188 * 149.99931 * 5 4 3 33 33 H 0.97004 * 119.99488 * 179.97438 * 9 8 6 34 34 H 1.08004 * 120.01783 * 359.97438 * 17 16 14 35 35 H 0.96704 * 114.00049 * 269.71637 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5286 1.7629 2.4520 6 6 2.7147 3.2521 2.5888 7 1 3.1370 3.8208 1.7735 8 6 2.3461 3.8888 3.7550 9 7 2.5081 5.1884 3.8742 10 14 1.6151 2.9053 5.1650 11 1 2.7047 2.4361 6.0584 12 1 0.6793 3.7641 5.9346 13 1 0.8803 1.7342 4.6232 14 6 4.2774 0.9602 0.9574 15 8 5.0237 0.8852 1.9144 16 6 4.7773 0.6440 -0.3948 17 6 4.6456 1.5771 -1.4270 18 6 5.1134 1.2782 -2.6900 19 9 4.9850 2.1809 -3.6870 20 6 5.7202 0.0544 -2.9384 21 9 6.1807 -0.2298 -4.1763 22 6 5.8504 -0.8805 -1.9204 23 8 6.4414 -2.0799 -2.1704 24 6 5.3836 -0.5900 -0.6475 25 9 5.5139 -1.4969 0.3453 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6213 1.4025 -0.9314 31 1 1.4725 1.5170 2.5634 32 1 3.1039 1.2524 3.2244 33 1 2.2483 5.6363 4.6945 34 1 4.1771 2.5313 -1.2363 35 1 5.8260 -2.7704 -2.4525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359378111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:54 Heat of formation + Delta-G solvation = -168.586426 kcal Electronic energy + Delta-G solvation = -26471.298034 eV Core-core repulsion = 22020.856407 eV Total energy + Delta-G solvation = -4450.441627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.79606 -50.32518 -49.85771 -41.50635 -40.10516 -37.91605 -37.43583 -35.05594 -33.84681 -32.21881 -31.13009 -30.01864 -27.16826 -25.85080 -24.63886 -23.86582 -21.50734 -20.85335 -19.71984 -19.53300 -19.46580 -19.06265 -18.38300 -17.95039 -17.76283 -17.47968 -16.85806 -16.83496 -16.33090 -16.26234 -16.02913 -15.85345 -15.65466 -15.53384 -14.96597 -14.86890 -14.48957 -14.28135 -14.14245 -13.64669 -13.34253 -13.20025 -12.99924 -12.72805 -12.50959 -12.31798 -12.28681 -11.96091 -11.73748 -11.13850 -10.82676 -10.46564 -10.16656 -10.01303 -9.59906 -8.33613 -6.39028 -0.90704 -0.65459 1.21013 1.29775 1.35264 1.38154 1.45860 1.74509 1.85289 2.19590 2.31382 2.58496 2.77344 2.99724 3.01357 3.10330 3.25232 3.88332 3.96384 4.04838 4.16593 4.26498 4.35140 4.37157 4.49578 4.74391 4.79425 4.89041 5.04840 5.12973 5.37501 5.43998 5.69903 5.86713 6.19856 6.37618 6.40335 6.62644 7.01369 7.26150 8.82487 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.004225 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.113866 B = 6625.012136 C = 6756.996096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.120 3.880 4 N -0.578 5.578 5 C 0.226 3.774 6 C -0.538 4.538 7 H 0.039 0.961 8 C 0.018 3.982 9 N -0.940 5.940 10 Si 0.939 3.061 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.238 1.238 14 C 0.550 3.450 15 O -0.569 6.569 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.089 3.911 19 F -0.113 7.113 20 C 0.094 3.906 21 F -0.107 7.107 22 C 0.089 3.911 23 O -0.472 6.472 24 C 0.130 3.870 25 F -0.117 7.117 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.269 0.731 34 H 0.175 0.825 35 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -14.797 -16.810 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.208 4.208 3 C -0.002 4.002 4 N -0.307 5.307 5 C 0.104 3.896 6 C -0.576 4.576 7 H 0.057 0.943 8 C -0.181 4.181 9 N -0.580 5.580 10 Si 0.762 3.238 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.161 1.161 14 C 0.337 3.663 15 O -0.449 6.449 16 C -0.127 4.127 17 C -0.089 4.089 18 C 0.069 3.931 19 F -0.091 7.091 20 C 0.073 3.927 21 F -0.085 7.085 22 C 0.041 3.959 23 O -0.287 6.287 24 C 0.109 3.891 25 F -0.095 7.095 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.192 0.808 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -0.427 -14.420 -16.090 21.610 hybrid contribution -0.315 -0.067 0.670 0.744 sum -0.742 -14.487 -15.419 21.170 Atomic orbital electron populations 1.24108 0.95259 1.03248 0.97133 1.23218 0.96873 0.97794 1.02928 1.21155 0.92848 0.97235 0.88922 1.47879 1.08442 1.62344 1.11987 1.19412 0.95664 0.93464 0.81042 1.21501 1.42172 0.92360 1.01573 0.94261 1.25725 0.95626 0.95739 1.00971 1.70024 1.49191 1.10341 1.28458 0.85844 0.78980 0.79705 0.79268 1.20351 1.20056 1.16104 1.18204 0.82640 0.77640 0.87778 1.90799 1.57006 1.54287 1.42784 1.19652 1.03696 0.94727 0.94645 1.21071 0.98442 1.00757 0.88618 1.17003 1.02998 0.87030 0.86107 1.91607 1.93823 1.65087 1.58614 1.17650 1.00338 0.93680 0.81029 1.91587 1.85981 1.93446 1.37477 1.17476 0.99676 0.89834 0.88929 1.84917 1.36855 1.17972 1.88907 1.17695 0.98974 0.86987 0.85441 1.91574 1.93273 1.65045 1.59616 0.87778 0.86338 0.87181 0.89215 0.87667 0.92808 0.96034 0.92224 0.80771 0.71403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 14.32 67.78 0.97 -2.17 16 2 C -0.19 -4.40 9.84 25.64 0.25 -4.15 16 3 C 0.12 3.36 5.67 85.63 0.49 3.84 16 4 N -0.58 -22.36 2.44 -834.22 -2.04 -24.39 16 5 C 0.23 10.54 4.29 85.63 0.37 10.91 16 6 C -0.54 -30.08 9.94 25.60 0.25 -29.82 16 7 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 8 C 0.02 1.04 5.47 84.66 0.46 1.50 16 9 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 10 Si 0.94 43.07 27.47 68.60 1.88 44.96 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 14 C 0.55 22.01 6.84 86.71 0.59 22.60 16 15 O -0.57 -28.42 16.45 -3.99 -0.07 -28.49 16 16 C -0.12 -3.60 4.90 -20.06 -0.10 -3.70 16 17 C -0.07 -1.65 7.45 22.58 0.17 -1.48 16 18 C 0.09 1.84 7.29 22.35 0.16 2.00 16 19 F -0.11 -2.37 17.17 44.97 0.77 -1.60 16 20 C 0.09 1.86 7.32 22.55 0.17 2.03 16 21 F -0.11 -2.10 17.01 44.97 0.76 -1.33 16 22 C 0.09 1.82 6.71 22.51 0.15 1.97 16 23 O -0.47 -7.91 13.22 -93.81 -1.24 -9.15 16 24 C 0.13 3.43 7.28 22.74 0.17 3.60 16 25 F -0.12 -3.57 16.52 44.97 0.74 -2.82 16 26 H 0.10 2.00 7.84 -2.91 -0.02 1.98 16 27 H 0.12 1.83 8.06 -2.91 -0.02 1.80 16 28 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.09 2.60 7.76 -2.39 -0.02 2.58 16 30 H 0.11 2.39 4.42 -2.39 -0.01 2.38 16 31 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 32 H 0.02 1.10 6.78 -2.38 -0.02 1.08 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.17 3.99 7.57 -2.91 -0.02 3.97 16 35 H 0.42 2.36 9.07 -74.05 -0.67 1.69 16 Total: -1.00 -74.30 325.34 5.67 -68.63 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.45 Total: 4.34 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.10 Total: 7.12 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.74 Total: -81.66 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.31 Total: -37.64 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 2.28 Total: -5.75 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Total: -74.30 5.67 -68.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.954 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds