Wall clock time and date at job start Tue Mar 31 2020 11:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 C 1.52996 * 109.46831 * 175.00086 * 4 2 1 6 6 F 1.39897 * 109.47650 * 60.00196 * 5 4 2 7 7 F 1.39904 * 109.47239 * 180.02562 * 5 4 2 8 8 F 1.39906 * 109.47304 * 300.00107 * 5 4 2 9 9 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 10 10 S 1.65601 * 120.00069 * 264.99453 * 9 2 1 11 11 O 1.42098 * 104.27794 * 308.93453 * 10 9 2 12 12 O 1.42098 * 104.27820 * 181.06901 * 10 9 2 13 13 C 1.81407 * 104.44612 * 65.00248 * 10 9 2 14 14 C 1.53000 * 109.47091 * 174.34737 * 13 10 9 15 15 C 1.50702 * 115.55070 * 295.23001 * 14 13 10 16 16 H 1.07993 * 120.00226 * 95.16158 * 15 14 13 17 17 C 1.37882 * 119.99822 * 274.88891 * 15 14 13 18 18 N 1.31515 * 119.99551 * 6.44628 * 17 15 14 19 19 Si 1.86792 * 120.00141 * 186.44700 * 17 15 14 20 20 H 1.48500 * 109.47156 * 89.99648 * 19 17 15 21 21 H 1.48496 * 109.47324 * 210.00192 * 19 17 15 22 22 H 1.48504 * 109.47240 * 330.00108 * 19 17 15 23 23 C 1.52998 * 117.49864 * 80.89449 * 14 13 10 24 24 C 1.52998 * 117.50210 * 149.55494 * 14 13 10 25 25 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 26 26 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 28 28 H 1.08997 * 109.47233 * 294.99826 * 4 2 1 29 29 H 1.09004 * 109.46960 * 55.00419 * 4 2 1 30 30 H 0.97001 * 120.00549 * 84.99641 * 9 2 1 31 31 H 1.08995 * 109.46970 * 54.34720 * 13 10 9 32 32 H 1.09000 * 109.46775 * 294.34286 * 13 10 9 33 33 H 0.97003 * 119.99746 * 185.04386 * 18 17 15 34 34 H 1.09007 * 117.50251 * 215.00100 * 23 14 13 35 35 H 1.09003 * 117.50010 * 0.02562 * 23 14 13 36 36 H 1.09008 * 117.49227 * 359.97438 * 24 14 13 37 37 H 1.08996 * 117.50141 * 144.97145 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6133 -1.3138 6 9 4.1227 -1.2032 -0.1746 7 9 4.0310 -1.2722 -2.4565 8 9 3.9349 0.7347 -1.3698 9 7 2.0183 -0.6907 1.1960 10 16 2.4123 0.1769 2.5504 11 8 3.2876 1.1904 2.0750 12 8 2.8607 -0.8033 3.4764 13 6 0.8409 0.8986 3.0985 14 6 1.0476 1.6165 4.4337 15 6 1.4276 0.7337 5.5944 16 1 2.4672 0.6044 5.8569 17 6 0.4477 0.0954 6.3248 18 7 -0.8067 0.1536 5.9340 19 14 0.9018 -0.8520 7.8693 20 1 0.8377 0.0552 9.0433 21 1 -0.0508 -1.9752 8.0591 22 1 2.2796 -1.3890 7.7335 23 6 1.6426 3.0255 4.3935 24 6 0.1620 2.8288 4.7286 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7516 -1.7715 -1.2058 29 1 1.6053 -0.2616 -2.1371 30 1 2.1110 -1.6563 1.1947 31 1 0.1013 0.1076 3.2220 32 1 0.4891 1.6119 2.3532 33 1 -1.5049 -0.2325 6.4856 34 1 2.3088 3.3140 5.2067 35 1 1.8864 3.4412 3.4158 36 1 -0.5677 3.1151 3.9711 37 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451417570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:46 Heat of formation + Delta-G solvation = -211.084540 kcal Electronic energy + Delta-G solvation = -26101.900221 eV Core-core repulsion = 21785.059689 eV Total energy + Delta-G solvation = -4316.840532 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.06234 -47.60418 -47.48314 -37.26281 -36.77694 -36.15822 -35.07535 -32.03168 -31.17599 -29.16974 -28.07579 -25.45449 -23.84554 -21.67333 -21.24111 -19.82824 -18.88680 -18.41107 -18.37391 -17.67250 -16.91661 -16.46950 -15.92229 -15.08991 -14.77687 -14.51516 -14.47614 -14.34201 -13.96337 -13.86648 -13.72081 -13.68100 -13.64952 -13.48517 -13.16608 -12.77078 -12.41500 -11.94646 -11.83739 -11.68479 -11.41323 -11.30480 -11.20799 -11.08471 -10.95931 -10.88086 -10.57025 -10.48329 -10.11900 -9.78120 -9.37216 -8.96646 -8.55113 -8.12243 -6.14247 -4.22876 1.05231 2.72781 3.29971 3.31953 3.36710 3.45786 3.75886 3.83896 4.01778 4.39237 4.54597 4.61058 4.80570 4.88394 5.04597 5.08789 5.14469 5.18415 5.25787 5.35555 5.58037 5.71908 5.85644 6.06182 6.08885 6.23577 6.34143 6.58174 6.68178 6.95766 7.18467 7.23090 7.36899 7.82363 8.19811 8.83932 9.48042 10.94266 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.004544 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.107017 B = 6160.798746 C = 6401.902374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 H 0.103 0.897 4 C -0.170 4.170 5 C 0.450 3.550 6 F -0.175 7.175 7 F -0.191 7.191 8 F -0.179 7.179 9 N -1.128 6.128 10 S 2.602 3.398 11 O -0.973 6.973 12 O -0.940 6.940 13 C -0.554 4.554 14 C 0.041 3.959 15 C -0.505 4.505 16 H 0.070 0.930 17 C 0.079 3.921 18 N -0.877 5.877 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.214 4.214 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.414 0.586 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -1.381 -16.036 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.035 3.965 3 H 0.121 0.879 4 C -0.210 4.210 5 C 0.396 3.604 6 F -0.156 7.156 7 F -0.172 7.172 8 F -0.160 7.160 9 N -0.884 5.884 10 S 2.699 3.301 11 O -0.963 6.963 12 O -0.931 6.931 13 C -0.687 4.687 14 C 0.039 3.961 15 C -0.543 4.543 16 H 0.088 0.912 17 C -0.125 4.125 18 N -0.513 5.513 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.252 4.252 24 C -0.177 4.177 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.248 0.752 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.049 -1.259 -15.688 15.773 hybrid contribution -0.456 -0.855 0.644 1.164 sum 0.593 -2.115 -15.044 15.204 Atomic orbital electron populations 1.22429 0.93693 1.03715 1.03717 1.20709 0.95185 0.97102 0.83488 0.87894 1.23225 0.88825 1.06462 1.02448 1.20538 0.92470 0.73957 0.73452 1.93218 1.87570 1.83877 1.50975 1.93172 1.90956 1.81354 1.51763 1.93214 1.93263 1.33511 1.96024 1.56211 1.84330 1.19918 1.27983 1.05330 0.77784 0.74700 0.72297 1.93515 1.62305 1.60637 1.79870 1.93574 1.79722 1.58717 1.61049 1.30084 1.20165 1.11600 1.06862 1.18324 1.01064 0.86156 0.90567 1.20564 0.93845 1.27191 1.12655 0.91167 1.24928 0.94919 0.95025 0.97637 1.70010 0.99679 1.44909 1.36747 0.86599 0.79119 0.79642 0.82985 1.20508 1.21103 1.19086 1.23256 0.97655 1.02991 1.01248 1.22527 0.90745 1.03604 1.00842 0.91082 0.91239 0.90521 0.86616 0.86162 0.75211 0.84628 0.88363 0.92872 0.89458 0.90631 0.91532 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.14 1.56 2.75 -67.93 -0.19 1.38 16 3 H 0.10 1.21 7.00 -51.93 -0.36 0.85 16 4 C -0.17 -1.41 4.94 -26.73 -0.13 -1.54 16 5 C 0.45 5.33 3.16 37.16 0.12 5.45 16 6 F -0.17 -2.53 15.45 2.25 0.03 -2.50 16 7 F -0.19 -2.15 17.32 2.25 0.04 -2.11 16 8 F -0.18 -2.44 16.71 2.25 0.04 -2.40 16 9 N -1.13 -15.95 3.84 -4.89 -0.02 -15.97 16 10 S 2.60 51.54 5.33 -107.50 -0.57 50.97 16 11 O -0.97 -20.99 17.39 -57.54 -1.00 -21.99 16 12 O -0.94 -22.46 17.10 -57.54 -0.98 -23.45 16 13 C -0.55 -11.09 4.88 37.16 0.18 -10.91 16 14 C 0.04 0.98 1.34 -155.66 -0.21 0.77 16 15 C -0.51 -13.68 7.66 -34.44 -0.26 -13.95 16 16 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 17 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 18 N -0.88 -23.74 12.93 55.43 0.72 -23.02 16 19 Si 0.89 21.30 29.55 -169.99 -5.02 16.27 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.21 -4.62 9.96 -26.70 -0.27 -4.88 16 24 C -0.14 -3.07 9.44 -26.70 -0.25 -3.32 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.80 5.97 -51.93 -0.31 0.49 16 28 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.41 5.13 8.53 -34.47 -0.29 4.83 16 31 H 0.14 2.79 8.14 -51.93 -0.42 2.36 16 32 H 0.10 1.62 7.11 -51.92 -0.37 1.26 16 33 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -33.22 333.92 -7.18 -40.40 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.69 Total: 4.95 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.75 Total: -26.18 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.70 Total: -39.00 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.98 Total: -45.44 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.57 Total: 50.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.22 -7.18 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451417570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.681 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds