Wall clock time and date at job start Tue Mar 31 2020 11:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 C 1.52996 * 109.46831 * 175.00086 * 4 2 1 6 6 F 1.39897 * 109.47650 * 60.00196 * 5 4 2 7 7 F 1.39904 * 109.47239 * 180.02562 * 5 4 2 8 8 F 1.39906 * 109.47304 * 300.00107 * 5 4 2 9 9 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 10 10 S 1.65601 * 120.00069 * 264.99453 * 9 2 1 11 11 O 1.42098 * 104.27794 * 308.93453 * 10 9 2 12 12 O 1.42098 * 104.27820 * 181.06901 * 10 9 2 13 13 C 1.81407 * 104.44612 * 65.00248 * 10 9 2 14 14 C 1.53000 * 109.47091 * 174.34737 * 13 10 9 15 15 C 1.50702 * 115.55070 * 295.23001 * 14 13 10 16 16 H 1.07993 * 120.00226 * 95.16158 * 15 14 13 17 17 C 1.37882 * 119.99822 * 274.88891 * 15 14 13 18 18 N 1.31515 * 119.99551 * 6.44628 * 17 15 14 19 19 Si 1.86792 * 120.00141 * 186.44700 * 17 15 14 20 20 H 1.48500 * 109.47156 * 89.99648 * 19 17 15 21 21 H 1.48496 * 109.47324 * 210.00192 * 19 17 15 22 22 H 1.48504 * 109.47240 * 330.00108 * 19 17 15 23 23 C 1.52998 * 117.49864 * 80.89449 * 14 13 10 24 24 C 1.52998 * 117.50210 * 149.55494 * 14 13 10 25 25 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 26 26 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 28 28 H 1.08997 * 109.47233 * 294.99826 * 4 2 1 29 29 H 1.09004 * 109.46960 * 55.00419 * 4 2 1 30 30 H 0.97001 * 120.00549 * 84.99641 * 9 2 1 31 31 H 1.08995 * 109.46970 * 54.34720 * 13 10 9 32 32 H 1.09000 * 109.46775 * 294.34286 * 13 10 9 33 33 H 0.97003 * 119.99746 * 185.04386 * 18 17 15 34 34 H 1.09007 * 117.50251 * 215.00100 * 23 14 13 35 35 H 1.09003 * 117.50010 * 0.02562 * 23 14 13 36 36 H 1.09008 * 117.49227 * 359.97438 * 24 14 13 37 37 H 1.08996 * 117.50141 * 144.97145 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6133 -1.3138 6 9 4.1227 -1.2032 -0.1746 7 9 4.0310 -1.2722 -2.4565 8 9 3.9349 0.7347 -1.3698 9 7 2.0183 -0.6907 1.1960 10 16 2.4123 0.1769 2.5504 11 8 3.2876 1.1904 2.0750 12 8 2.8607 -0.8033 3.4764 13 6 0.8409 0.8986 3.0985 14 6 1.0476 1.6165 4.4337 15 6 1.4276 0.7337 5.5944 16 1 2.4672 0.6044 5.8569 17 6 0.4477 0.0954 6.3248 18 7 -0.8067 0.1536 5.9340 19 14 0.9018 -0.8520 7.8693 20 1 0.8377 0.0552 9.0433 21 1 -0.0508 -1.9752 8.0591 22 1 2.2796 -1.3890 7.7335 23 6 1.6426 3.0255 4.3935 24 6 0.1620 2.8288 4.7286 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7516 -1.7715 -1.2058 29 1 1.6053 -0.2616 -2.1371 30 1 2.1110 -1.6563 1.1947 31 1 0.1013 0.1076 3.2220 32 1 0.4891 1.6119 2.3532 33 1 -1.5049 -0.2325 6.4856 34 1 2.3088 3.3140 5.2067 35 1 1.8864 3.4412 3.4158 36 1 -0.5677 3.1151 3.9711 37 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451417570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:45 Heat of formation + Delta-G solvation = -234.330264 kcal Electronic energy + Delta-G solvation = -26102.908231 eV Core-core repulsion = 21785.059689 eV Total energy + Delta-G solvation = -4317.848542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.00662 -48.52476 -48.49550 -38.56244 -38.27892 -37.71983 -36.75407 -34.05415 -32.15408 -30.19937 -29.45516 -27.45911 -24.69953 -22.99611 -22.51960 -21.53637 -20.35667 -19.43158 -19.32277 -18.75334 -18.36185 -18.16605 -17.07371 -16.82271 -16.57292 -15.96462 -15.63012 -15.44633 -15.35874 -14.97169 -14.92445 -14.70283 -14.66860 -14.58447 -14.25440 -13.81322 -13.64223 -13.46557 -13.16504 -13.13641 -12.91130 -12.87266 -12.82380 -12.58444 -12.42021 -12.37778 -12.19825 -12.01135 -11.86210 -11.53491 -10.85428 -10.58684 -10.49325 -9.87375 -8.18050 -6.29994 -0.48526 1.38150 1.41028 1.52118 1.89557 2.01096 2.42247 2.92501 2.99165 3.02626 3.10466 3.17373 3.36863 3.48610 3.78873 4.01822 4.06908 4.19099 4.26329 4.40404 4.50290 4.58607 4.66232 4.66752 4.84003 4.95688 4.97372 5.21288 5.22638 5.41214 5.50602 5.60030 5.75213 6.15650 6.24955 6.75651 7.41491 8.89731 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.004544 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.107017 B = 6160.798746 C = 6401.902374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 H 0.094 0.906 4 C -0.158 4.158 5 C 0.438 3.562 6 F -0.197 7.197 7 F -0.188 7.188 8 F -0.194 7.194 9 N -1.116 6.116 10 S 2.615 3.385 11 O -0.996 6.996 12 O -0.992 6.992 13 C -0.546 4.546 14 C 0.007 3.993 15 C -0.523 4.523 16 H 0.045 0.955 17 C 0.043 3.957 18 N -0.892 5.892 19 Si 0.931 3.069 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.279 1.279 23 C -0.205 4.205 24 C -0.132 4.132 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.142 0.858 29 H 0.160 0.840 30 H 0.423 0.577 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -1.409 -18.067 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 H 0.112 0.888 4 C -0.197 4.197 5 C 0.384 3.616 6 F -0.178 7.178 7 F -0.170 7.170 8 F -0.175 7.175 9 N -0.877 5.877 10 S 2.713 3.287 11 O -0.986 6.986 12 O -0.982 6.982 13 C -0.679 4.679 14 C 0.005 3.995 15 C -0.561 4.561 16 H 0.063 0.937 17 C -0.160 4.160 18 N -0.528 5.528 19 Si 0.757 3.243 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.204 1.204 23 C -0.242 4.242 24 C -0.171 4.171 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.178 0.822 30 H 0.259 0.741 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.374 -1.283 -17.715 17.766 hybrid contribution 0.033 -0.831 1.187 1.450 sum -0.341 -2.114 -16.528 16.666 Atomic orbital electron populations 1.22435 0.91558 1.04867 1.04491 1.21072 0.96838 0.96709 0.82945 0.88796 1.23344 0.85638 1.08289 1.02469 1.21221 0.94406 0.73139 0.72833 1.93178 1.88200 1.84180 1.52266 1.93173 1.91179 1.81194 1.51430 1.93183 1.93615 1.34669 1.96045 1.55718 1.84336 1.20178 1.27488 1.04566 0.77554 0.74081 0.72546 1.93480 1.63275 1.61555 1.80281 1.93502 1.80911 1.60105 1.63695 1.29930 1.20006 1.12028 1.05940 1.18467 1.02894 0.86768 0.91371 1.20689 0.92773 1.28180 1.14425 0.93670 1.25433 0.95118 0.95790 0.99624 1.70038 0.99884 1.45538 1.37357 0.85962 0.78232 0.79103 0.81019 1.19495 1.20047 1.20449 1.23306 0.97226 1.01431 1.02278 1.22487 0.91555 1.02636 1.00465 0.87870 0.89979 0.92169 0.83993 0.82172 0.74056 0.85254 0.84713 0.92637 0.90063 0.88231 0.89046 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.48 71.98 0.68 -1.74 16 2 C 0.13 2.48 2.75 45.00 0.12 2.60 16 3 H 0.09 1.98 7.00 -2.39 -0.02 1.96 16 4 C -0.16 -2.04 4.94 30.60 0.15 -1.89 16 5 C 0.44 9.55 3.16 71.98 0.23 9.77 16 6 F -0.20 -5.56 15.45 44.97 0.69 -4.87 16 7 F -0.19 -3.86 17.32 44.97 0.78 -3.08 16 8 F -0.19 -5.05 16.71 44.97 0.75 -4.30 16 9 N -1.12 -30.00 3.84 -169.39 -0.65 -30.65 16 10 S 2.62 103.27 5.33 -56.49 -0.30 102.97 16 11 O -1.00 -42.81 17.39 -127.65 -2.22 -45.03 16 12 O -0.99 -48.70 17.10 -127.65 -2.18 -50.88 16 13 C -0.55 -21.29 4.88 71.98 0.35 -20.94 16 14 C 0.01 0.34 1.34 -52.93 -0.07 0.27 16 15 C -0.52 -28.88 7.66 25.60 0.20 -28.69 16 16 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 17 C 0.04 2.32 5.39 84.66 0.46 2.78 16 18 N -0.89 -48.09 12.93 21.45 0.28 -47.81 16 19 Si 0.93 44.00 29.55 68.60 2.03 46.03 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 23 C -0.21 -8.67 9.96 30.62 0.30 -8.36 16 24 C -0.13 -5.75 9.44 30.62 0.29 -5.46 16 25 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.06 5.97 -2.39 -0.01 1.05 16 28 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.42 9.95 8.53 -96.75 -0.82 9.12 16 31 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 32 H 0.13 4.13 7.11 -2.39 -0.02 4.11 16 33 H 0.26 13.57 8.32 -92.71 -0.77 12.80 16 34 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 35 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -73.49 333.92 2.16 -71.33 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.28 Total: 17.95 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 2.71 Total: -51.65 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -0.37 Total: -78.47 kcal Atomic # 8 Polarization: -91.51 SS G_CDS: -4.40 Total: -95.91 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 2.22 Total: -12.25 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 103.27 SS G_CDS: -0.30 Total: 102.97 kcal Total: -73.49 2.16 -71.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451417570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.000 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds