Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47713 * 2 1 4 4 C 1.53009 * 109.46922 * 119.99528 * 2 1 3 5 5 C 1.52994 * 109.47161 * 185.00067 * 4 2 1 6 6 F 1.39903 * 109.47507 * 60.00022 * 5 4 2 7 7 F 1.39904 * 109.47419 * 180.02562 * 5 4 2 8 8 F 1.39898 * 109.47311 * 300.00188 * 5 4 2 9 9 N 1.46494 * 109.47531 * 239.99621 * 2 1 3 10 10 S 1.65599 * 120.00095 * 95.00145 * 9 2 1 11 11 O 1.42103 * 104.27814 * 181.07547 * 10 9 2 12 12 O 1.42101 * 104.27453 * 308.93018 * 10 9 2 13 13 C 1.81400 * 104.44785 * 65.00241 * 10 9 2 14 14 C 1.53007 * 109.46611 * 174.08620 * 13 10 9 15 15 C 1.50697 * 115.55025 * 65.20618 * 14 13 10 16 16 H 1.07998 * 119.99810 * 264.77668 * 15 14 13 17 17 C 1.37874 * 120.00264 * 84.78181 * 15 14 13 18 18 N 1.31513 * 120.00258 * 352.22260 * 17 15 14 19 19 Si 1.86803 * 120.00014 * 172.22013 * 17 15 14 20 20 H 1.48500 * 109.46767 * 60.00118 * 19 17 15 21 21 H 1.48502 * 109.46795 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47387 * 299.99900 * 19 17 15 23 23 C 1.52993 * 117.49737 * 279.53098 * 14 13 10 24 24 C 1.53004 * 117.49406 * 210.87184 * 14 13 10 25 25 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47216 * 300.00225 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00373 * 1 2 3 28 28 H 1.08998 * 109.47073 * 305.00079 * 4 2 1 29 29 H 1.09005 * 109.47069 * 65.00187 * 4 2 1 30 30 H 0.97009 * 119.99887 * 275.00207 * 9 2 1 31 31 H 1.08999 * 109.46763 * 294.08367 * 13 10 9 32 32 H 1.08991 * 109.47280 * 54.08719 * 13 10 9 33 33 H 0.96994 * 120.00431 * 185.03261 * 18 17 15 34 34 H 1.08998 * 117.50079 * 359.97438 * 23 14 13 35 35 H 1.08997 * 117.50044 * 145.02708 * 23 14 13 36 36 H 1.08993 * 117.49694 * 214.98127 * 24 14 13 37 37 H 1.08997 * 117.50218 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3139 6 9 3.9349 0.7347 1.3698 7 9 4.0311 -1.2732 2.4559 8 9 4.1226 -1.2031 0.1746 9 7 2.0184 -0.6906 -1.1960 10 16 2.4123 0.1770 -2.5504 11 8 2.8124 -0.8078 -3.4935 12 8 1.2752 0.9965 -2.7846 13 6 3.8314 1.1871 -2.0439 14 6 4.3859 1.9332 -3.2592 15 6 3.4643 2.9576 -3.8692 16 1 2.8394 2.6900 -4.7085 17 6 3.4187 4.2364 -3.3559 18 7 4.0606 4.5220 -2.2442 19 14 2.4453 5.5634 -4.2397 20 1 1.0189 5.1589 -4.3221 21 1 2.5548 6.8402 -3.4892 22 1 2.9881 5.7459 -5.6098 23 6 5.3053 1.1579 -4.2050 24 6 5.8866 2.2310 -3.2810 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7715 1.2058 30 1 2.1110 -1.6563 -1.1947 31 1 3.5142 1.9068 -1.2893 32 1 4.6062 0.5428 -1.6285 33 1 3.9698 5.4008 -1.8438 34 1 5.5155 0.1165 -3.9612 35 1 5.2439 1.3891 -5.2684 36 1 6.2071 3.1677 -3.7368 37 1 6.4786 1.8959 -2.4294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451417571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = -211.421309 kcal Electronic energy + Delta-G solvation = -26574.479839 eV Core-core repulsion = 22257.624703 eV Total energy + Delta-G solvation = -4316.855136 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08446 -47.61406 -47.51812 -37.21263 -36.71907 -36.15957 -35.06880 -32.02713 -31.17024 -28.93413 -28.15178 -25.43805 -23.83132 -21.64780 -21.18479 -19.82802 -18.82910 -18.45228 -18.36969 -17.67204 -16.90296 -16.37437 -15.93049 -15.08475 -14.76430 -14.56058 -14.49929 -14.32557 -13.98667 -13.87092 -13.74833 -13.69568 -13.53138 -13.35585 -13.05069 -12.77012 -12.37653 -11.95872 -11.82174 -11.59937 -11.43360 -11.30089 -11.18988 -11.02119 -10.90604 -10.87514 -10.58281 -10.43753 -10.10978 -9.76413 -9.35667 -8.94032 -8.54581 -8.07116 -6.11867 -4.22838 1.06494 2.72461 3.33263 3.34459 3.35560 3.41616 3.75856 3.84781 4.01064 4.38301 4.49528 4.67852 4.77071 5.00875 5.04561 5.15901 5.20092 5.24969 5.28417 5.38551 5.74849 5.78404 6.00074 6.11613 6.28375 6.30475 6.40621 6.64607 6.75054 7.01296 7.17542 7.28080 7.41827 7.81750 8.22595 8.82273 9.48055 10.95502 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005749 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.175213 B = 4869.330763 C = 4995.946976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.100 0.900 4 C -0.174 4.174 5 C 0.448 3.552 6 F -0.176 7.176 7 F -0.189 7.189 8 F -0.178 7.178 9 N -1.130 6.130 10 S 2.604 3.396 11 O -0.972 6.972 12 O -0.947 6.947 13 C -0.553 4.553 14 C 0.045 3.955 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.873 5.873 19 Si 0.890 3.110 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.209 4.209 24 C -0.141 4.141 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.411 0.589 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -10.388 10.496 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 H 0.118 0.882 4 C -0.213 4.213 5 C 0.394 3.606 6 F -0.158 7.158 7 F -0.171 7.171 8 F -0.160 7.160 9 N -0.886 5.886 10 S 2.702 3.298 11 O -0.963 6.963 12 O -0.937 6.937 13 C -0.686 4.686 14 C 0.043 3.957 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.508 5.508 19 Si 0.717 3.283 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.180 4.180 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.245 0.755 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.969 -10.081 9.780 14.595 hybrid contribution 0.389 0.538 0.370 0.760 sum -3.579 -9.543 10.149 14.384 Atomic orbital electron populations 1.22270 0.93357 1.02864 1.04085 1.20669 0.95997 0.96426 0.82790 0.88186 1.23315 0.88686 1.06474 1.02862 1.20607 0.92506 0.74055 0.73466 1.93252 1.93240 1.33256 1.96008 1.93176 1.90920 1.81266 1.51717 1.93194 1.87659 1.83994 1.51105 1.56240 1.82717 1.19337 1.30298 1.05268 0.77325 0.74497 0.72736 1.93506 1.84902 1.59084 1.58765 1.93537 1.47674 1.69704 1.82796 1.29986 1.16635 1.11993 1.10012 1.18252 0.91047 0.96067 0.90379 1.20479 1.23746 0.94211 1.16970 0.91431 1.24946 0.94394 0.98242 0.94661 1.69972 1.40840 1.22184 1.17820 0.86668 0.81070 0.80562 0.80014 1.19500 1.21142 1.19907 1.23200 1.08386 0.95561 0.97461 1.22547 0.97379 0.98320 0.99748 0.92000 0.91426 0.89678 0.86045 0.86663 0.75547 0.84946 0.88141 0.92682 0.90685 0.89542 0.89590 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.52 37.16 0.35 -1.41 16 2 C 0.15 1.76 2.62 -67.93 -0.18 1.59 16 3 H 0.10 1.32 6.81 -51.93 -0.35 0.97 16 4 C -0.17 -1.48 4.94 -26.73 -0.13 -1.61 16 5 C 0.45 5.19 3.16 37.15 0.12 5.31 16 6 F -0.18 -2.46 16.71 2.25 0.04 -2.42 16 7 F -0.19 -2.14 17.32 2.25 0.04 -2.10 16 8 F -0.18 -2.34 14.98 2.25 0.03 -2.30 16 9 N -1.13 -15.86 3.84 -4.89 -0.02 -15.88 16 10 S 2.60 52.00 5.12 -107.50 -0.55 51.45 16 11 O -0.97 -21.38 18.08 -57.54 -1.04 -22.42 16 12 O -0.95 -21.80 16.76 -57.54 -0.96 -22.77 16 13 C -0.55 -11.74 5.76 37.16 0.21 -11.52 16 14 C 0.04 1.10 1.32 -155.66 -0.21 0.90 16 15 C -0.52 -14.13 8.17 -34.44 -0.28 -14.41 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 18 N -0.87 -23.91 12.98 55.43 0.72 -23.19 16 19 Si 0.89 21.26 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.21 -4.67 9.96 -26.70 -0.27 -4.94 16 24 C -0.14 -3.26 9.49 -26.69 -0.25 -3.52 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 28 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.41 4.76 8.53 -34.47 -0.29 4.47 16 31 H 0.13 2.89 7.63 -51.92 -0.40 2.50 16 32 H 0.10 1.89 7.62 -51.93 -0.40 1.50 16 33 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -32.69 336.24 -7.18 -39.87 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.75 Total: 5.92 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -0.73 Total: -27.46 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.70 Total: -39.07 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.00 Total: -45.18 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 52.00 SS G_CDS: -0.55 Total: 51.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.69 -7.18 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451417571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.551 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds