Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47713 * 2 1 4 4 C 1.53009 * 109.46922 * 119.99528 * 2 1 3 5 5 C 1.52994 * 109.47161 * 185.00067 * 4 2 1 6 6 F 1.39903 * 109.47507 * 60.00022 * 5 4 2 7 7 F 1.39904 * 109.47419 * 180.02562 * 5 4 2 8 8 F 1.39898 * 109.47311 * 300.00188 * 5 4 2 9 9 N 1.46494 * 109.47531 * 239.99621 * 2 1 3 10 10 S 1.65599 * 120.00095 * 95.00145 * 9 2 1 11 11 O 1.42103 * 104.27814 * 181.07547 * 10 9 2 12 12 O 1.42101 * 104.27453 * 308.93018 * 10 9 2 13 13 C 1.81400 * 104.44785 * 65.00241 * 10 9 2 14 14 C 1.53007 * 109.46611 * 174.08620 * 13 10 9 15 15 C 1.50697 * 115.55025 * 65.20618 * 14 13 10 16 16 H 1.07998 * 119.99810 * 264.77668 * 15 14 13 17 17 C 1.37874 * 120.00264 * 84.78181 * 15 14 13 18 18 N 1.31513 * 120.00258 * 352.22260 * 17 15 14 19 19 Si 1.86803 * 120.00014 * 172.22013 * 17 15 14 20 20 H 1.48500 * 109.46767 * 60.00118 * 19 17 15 21 21 H 1.48502 * 109.46795 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47387 * 299.99900 * 19 17 15 23 23 C 1.52993 * 117.49737 * 279.53098 * 14 13 10 24 24 C 1.53004 * 117.49406 * 210.87184 * 14 13 10 25 25 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47216 * 300.00225 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00373 * 1 2 3 28 28 H 1.08998 * 109.47073 * 305.00079 * 4 2 1 29 29 H 1.09005 * 109.47069 * 65.00187 * 4 2 1 30 30 H 0.97009 * 119.99887 * 275.00207 * 9 2 1 31 31 H 1.08999 * 109.46763 * 294.08367 * 13 10 9 32 32 H 1.08991 * 109.47280 * 54.08719 * 13 10 9 33 33 H 0.96994 * 120.00431 * 185.03261 * 18 17 15 34 34 H 1.08998 * 117.50079 * 359.97438 * 23 14 13 35 35 H 1.08997 * 117.50044 * 145.02708 * 23 14 13 36 36 H 1.08993 * 117.49694 * 214.98127 * 24 14 13 37 37 H 1.08997 * 117.50218 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3139 6 9 3.9349 0.7347 1.3698 7 9 4.0311 -1.2732 2.4559 8 9 4.1226 -1.2031 0.1746 9 7 2.0184 -0.6906 -1.1960 10 16 2.4123 0.1770 -2.5504 11 8 2.8124 -0.8078 -3.4935 12 8 1.2752 0.9965 -2.7846 13 6 3.8314 1.1871 -2.0439 14 6 4.3859 1.9332 -3.2592 15 6 3.4643 2.9576 -3.8692 16 1 2.8394 2.6900 -4.7085 17 6 3.4187 4.2364 -3.3559 18 7 4.0606 4.5220 -2.2442 19 14 2.4453 5.5634 -4.2397 20 1 1.0189 5.1589 -4.3221 21 1 2.5548 6.8402 -3.4892 22 1 2.9881 5.7459 -5.6098 23 6 5.3053 1.1579 -4.2050 24 6 5.8866 2.2310 -3.2810 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7715 1.2058 30 1 2.1110 -1.6563 -1.1947 31 1 3.5142 1.9068 -1.2893 32 1 4.6062 0.5428 -1.6285 33 1 3.9698 5.4008 -1.8438 34 1 5.5155 0.1165 -3.9612 35 1 5.2439 1.3891 -5.2684 36 1 6.2071 3.1677 -3.7368 37 1 6.4786 1.8959 -2.4294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451417571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = -233.968333 kcal Electronic energy + Delta-G solvation = -26575.457551 eV Core-core repulsion = 22257.624703 eV Total energy + Delta-G solvation = -4317.832848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.01069 -48.52390 -48.49432 -38.58158 -38.29529 -37.74063 -36.76684 -34.08256 -32.18731 -29.90719 -29.76232 -27.48757 -24.70927 -23.01778 -22.57767 -21.58734 -20.36129 -19.44095 -19.31601 -18.79182 -18.34749 -18.12512 -17.12116 -16.77070 -16.67073 -16.06644 -15.62612 -15.46239 -15.32603 -14.99287 -14.89613 -14.71905 -14.66026 -14.53413 -14.28128 -13.74307 -13.71767 -13.59874 -13.18518 -13.13057 -12.91794 -12.89841 -12.83961 -12.55746 -12.45698 -12.42032 -12.23227 -12.00663 -11.87363 -11.57378 -10.88400 -10.62793 -10.54142 -9.88868 -8.17823 -6.33529 -0.51547 1.40507 1.41933 1.49252 1.88601 1.99863 2.40418 2.88474 2.91608 3.03977 3.08688 3.17399 3.36011 3.45078 3.77985 3.93939 4.00371 4.21874 4.25893 4.37702 4.50043 4.57321 4.63336 4.66336 4.83214 4.95067 4.95571 5.18685 5.19676 5.43160 5.45559 5.56274 5.71821 6.17158 6.22674 6.72363 7.38697 8.88840 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005749 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.175213 B = 4869.330763 C = 4995.946976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.160 4.160 5 C 0.439 3.561 6 F -0.195 7.195 7 F -0.187 7.187 8 F -0.191 7.191 9 N -1.112 6.112 10 S 2.624 3.376 11 O -0.995 6.995 12 O -0.983 6.983 13 C -0.553 4.553 14 C 0.015 3.985 15 C -0.536 4.536 16 H 0.050 0.950 17 C 0.044 3.956 18 N -0.891 5.891 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.269 1.269 23 C -0.198 4.198 24 C -0.140 4.140 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.426 0.574 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.266 0.734 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -11.592 11.988 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.099 0.901 4 C -0.199 4.199 5 C 0.385 3.615 6 F -0.177 7.177 7 F -0.169 7.169 8 F -0.172 7.172 9 N -0.874 5.874 10 S 2.721 3.279 11 O -0.986 6.986 12 O -0.973 6.973 13 C -0.685 4.685 14 C 0.013 3.987 15 C -0.573 4.573 16 H 0.068 0.932 17 C -0.160 4.160 18 N -0.526 5.526 19 Si 0.761 3.239 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.235 4.235 24 C -0.179 4.179 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.263 0.737 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.608 -11.288 11.267 16.601 hybrid contribution 0.604 0.859 -0.044 1.051 sum -4.004 -10.429 11.222 15.835 Atomic orbital electron populations 1.22260 0.92018 1.04384 1.03773 1.20936 0.97105 0.95884 0.83055 0.90076 1.23376 0.85966 1.08435 1.02084 1.21155 0.94115 0.73126 0.73104 1.93220 1.93587 1.34779 1.96066 1.93179 1.91095 1.81083 1.51499 1.93167 1.88112 1.84085 1.51846 1.55684 1.82152 1.19788 1.29757 1.04343 0.76332 0.73927 0.73348 1.93463 1.85075 1.59309 1.60703 1.93495 1.48765 1.71039 1.84007 1.29895 1.18048 1.12186 1.08346 1.18394 0.91253 0.96912 0.92171 1.20655 1.24275 0.95546 1.16861 0.93183 1.25529 0.95385 0.99746 0.95297 1.70029 1.41584 1.22575 1.18439 0.85946 0.79542 0.78920 0.79457 1.20039 1.19875 1.19400 1.23242 1.06760 0.96346 0.97132 1.22492 0.96984 0.97983 1.00487 0.89583 0.88623 0.93149 0.82672 0.83351 0.73690 0.86053 0.86080 0.92517 0.88637 0.89703 0.91365 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.52 71.98 0.69 -2.39 16 2 C 0.14 2.95 2.62 44.99 0.12 3.07 16 3 H 0.08 2.08 6.81 -2.39 -0.02 2.07 16 4 C -0.16 -2.12 4.94 30.60 0.15 -1.97 16 5 C 0.44 9.17 3.16 71.98 0.23 9.39 16 6 F -0.19 -5.23 16.71 44.97 0.75 -4.47 16 7 F -0.19 -3.76 17.32 44.97 0.78 -2.98 16 8 F -0.19 -4.63 14.98 44.97 0.67 -3.96 16 9 N -1.11 -29.44 3.84 -169.39 -0.65 -30.09 16 10 S 2.62 104.37 5.12 -56.49 -0.29 104.08 16 11 O -1.00 -43.29 18.08 -127.65 -2.31 -45.60 16 12 O -0.98 -46.07 16.76 -127.65 -2.14 -48.21 16 13 C -0.55 -23.45 5.76 71.98 0.41 -23.03 16 14 C 0.01 0.73 1.32 -52.93 -0.07 0.66 16 15 C -0.54 -29.89 8.17 25.60 0.21 -29.68 16 16 H 0.05 2.88 7.83 -2.91 -0.02 2.86 16 17 C 0.04 2.40 5.38 84.65 0.46 2.85 16 18 N -0.89 -49.22 12.98 21.45 0.28 -48.94 16 19 Si 0.94 43.88 29.55 68.60 2.03 45.91 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C -0.20 -8.77 9.96 30.62 0.30 -8.47 16 24 C -0.14 -6.51 9.49 30.62 0.29 -6.22 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.32 7.42 -2.39 -0.02 1.30 16 28 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.43 8.82 8.53 -96.73 -0.82 7.99 16 31 H 0.12 5.40 7.63 -2.39 -0.02 5.38 16 32 H 0.12 4.48 7.62 -2.39 -0.02 4.46 16 33 H 0.27 13.97 8.32 -92.71 -0.77 13.20 16 34 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 35 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -71.57 336.24 2.18 -69.39 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: -58.57 SS G_CDS: 2.79 Total: -55.79 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -0.37 Total: -79.03 kcal Atomic # 8 Polarization: -89.36 SS G_CDS: -4.45 Total: -93.81 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 2.20 Total: -11.42 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 104.37 SS G_CDS: -0.29 Total: 104.08 kcal Total: -71.57 2.18 -69.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451417571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.582 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds