Wall clock time and date at job start Tue Mar 31 2020 10:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47075 * 2 1 4 4 C 1.50695 * 109.46863 * 240.00056 * 2 1 3 5 5 H 1.08001 * 119.99527 * 239.99771 * 4 2 1 6 6 C 1.37880 * 120.00433 * 60.00283 * 4 2 1 7 7 N 1.31511 * 119.99524 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47278 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47179 * 119.99962 * 8 6 4 11 11 H 1.48500 * 109.47163 * 239.99830 * 8 6 4 12 12 C 1.53000 * 109.46953 * 119.99985 * 2 1 3 13 13 S 1.81403 * 109.47053 * 300.00054 * 12 2 1 14 14 O 1.42098 * 110.54448 * 68.37674 * 13 12 2 15 15 O 1.42095 * 110.54178 * 291.62286 * 13 12 2 16 16 N 1.65602 * 104.44828 * 179.97438 * 13 12 2 17 17 C 1.47577 * 134.49646 * 270.00260 * 16 13 12 18 18 C 1.53944 * 86.11824 * 204.63881 * 17 16 13 19 19 C 1.47584 * 134.49025 * 89.99976 * 16 13 12 20 20 H 1.09001 * 113.86858 * 269.67404 * 19 16 13 21 21 C 1.52997 * 113.76990 * 41.05686 * 19 16 13 22 22 F 1.39905 * 109.47157 * 175.99842 * 21 19 16 23 23 F 1.39900 * 109.47010 * 56.00233 * 21 19 16 24 24 F 1.39897 * 109.47422 * 295.99925 * 21 19 16 25 25 H 1.09005 * 109.47178 * 300.00283 * 1 2 3 26 26 H 1.08999 * 109.47338 * 59.99891 * 1 2 3 27 27 H 1.09002 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47001 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47801 * 299.99921 * 3 2 1 30 30 H 1.09005 * 109.47349 * 59.99822 * 3 2 1 31 31 H 0.97002 * 119.99738 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46959 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47019 * 59.99945 * 12 2 1 34 34 H 1.09000 * 113.77331 * 90.33201 * 17 16 13 35 35 H 1.09001 * 113.86785 * 318.95129 * 17 16 13 36 36 H 1.09001 * 113.74099 * 222.04135 * 18 17 16 37 37 H 1.08999 * 113.74156 * 90.73707 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1483 -2.2857 -3.6037 10 1 1.1678 -1.5865 -4.8164 11 1 3.1472 -0.1858 -4.8160 12 6 2.0400 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0528 -0.7408 3.9936 17 6 1.5789 -1.8946 4.7823 18 6 2.5009 -1.3757 5.9006 19 6 3.2984 -0.6796 4.7829 20 1 4.1078 -1.2866 4.3773 21 6 3.7373 0.7436 5.1330 22 9 4.8692 0.6940 5.9538 23 9 2.7010 1.3987 5.8069 24 9 4.0431 1.4396 3.9586 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1609 -3.4844 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 1.8819 -2.8593 4.3753 35 1 0.5187 -1.8525 5.0321 36 1 3.0563 -2.1620 6.4117 37 1 2.0120 -0.6841 6.5868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451574377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:04 Heat of formation + Delta-G solvation = -184.911556 kcal Electronic energy + Delta-G solvation = -26613.875624 eV Core-core repulsion = 22298.170038 eV Total energy + Delta-G solvation = -4315.705586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.95567 -47.55239 -47.32554 -39.43210 -36.58643 -36.30195 -35.34722 -31.69216 -29.25572 -28.57939 -26.59345 -25.73970 -25.25542 -23.70529 -21.45891 -19.58606 -19.07474 -18.44890 -18.24358 -17.67992 -17.13867 -16.03187 -15.81343 -15.34180 -14.84916 -14.55073 -14.30263 -14.27440 -14.05323 -13.86842 -13.71219 -13.54074 -13.43167 -13.04922 -13.00583 -12.62113 -12.53829 -12.20558 -12.10896 -11.44438 -11.31420 -11.23888 -11.10423 -11.01173 -10.90451 -10.73767 -10.39915 -10.30559 -10.14237 -9.74840 -9.68103 -9.24261 -8.68540 -8.43007 -6.06004 -4.18232 0.64225 2.57027 2.78154 3.23128 3.31572 3.33845 3.67418 3.77622 4.00355 4.17956 4.30723 4.35521 4.38639 4.62504 4.77112 5.03632 5.18822 5.23519 5.35206 5.43687 5.62998 5.74338 5.91811 6.10126 6.32983 6.67183 6.76870 6.87981 7.01877 7.29172 7.47811 7.65326 7.95663 8.06791 8.29997 8.80317 9.47317 10.95396 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.004548 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.499409 B = 6154.794025 C = 6345.360242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.579 4.579 13 S 2.593 3.407 14 O -0.951 6.951 15 O -0.939 6.939 16 N -1.030 6.030 17 C 0.125 3.875 18 C -0.136 4.136 19 C 0.100 3.900 20 H 0.136 0.864 21 C 0.442 3.558 22 F -0.184 7.184 23 F -0.176 7.176 24 F -0.154 7.154 25 H 0.026 0.974 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -6.151 16.676 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.220 4.220 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.713 4.713 13 S 2.694 3.306 14 O -0.942 6.942 15 O -0.930 6.930 16 N -0.865 5.865 17 C 0.000 4.000 18 C -0.175 4.175 19 C -0.010 4.010 20 H 0.154 0.846 21 C 0.387 3.613 22 F -0.165 7.165 23 F -0.158 7.158 24 F -0.135 7.135 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.084 -5.101 16.489 17.737 hybrid contribution 0.870 -0.741 -1.299 1.730 sum 4.955 -5.843 15.190 17.013 Atomic orbital electron populations 1.22277 0.96913 1.00586 1.02331 1.17953 0.92820 0.92343 0.88978 1.22261 0.99770 0.97645 1.02352 1.20962 1.31732 1.12084 0.89340 0.92288 1.24945 0.94877 0.94981 0.98965 1.69812 1.36274 1.22593 1.23423 0.86468 0.78643 0.79599 0.82861 1.19857 1.20911 1.20903 1.30575 1.11231 1.12717 1.16790 1.05935 0.74772 0.75215 0.74691 1.93548 1.28708 1.86482 1.85425 1.93630 1.77690 1.36596 1.85097 1.60952 1.28448 1.47174 1.49962 1.22687 1.00688 0.88806 0.87807 1.23696 0.97129 1.00672 0.95986 1.23558 0.91632 0.91487 0.94281 0.84616 1.20591 0.75129 0.89961 0.75645 1.93171 1.52793 1.96851 1.73708 1.93168 1.58525 1.83335 1.80747 1.93366 1.92754 1.81170 1.46177 0.95474 0.88567 0.94500 0.94426 0.88668 0.95305 0.92752 0.86439 0.86533 0.89004 0.88675 0.88497 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 2 C 0.08 1.98 0.52 -155.67 -0.08 1.90 16 3 C -0.16 -4.05 7.77 37.15 0.29 -3.76 16 4 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.17 9.35 55.43 0.52 -23.65 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C -0.58 -11.30 5.12 37.16 0.19 -11.11 16 13 S 2.59 48.70 4.97 -107.50 -0.53 48.16 16 14 O -0.95 -20.10 15.64 -57.54 -0.90 -21.00 16 15 O -0.94 -19.88 12.10 -57.54 -0.70 -20.58 16 16 N -1.03 -13.83 3.83 -112.06 -0.43 -14.26 16 17 C 0.12 1.12 8.91 -2.98 -0.03 1.09 16 18 C -0.14 -1.01 7.74 -25.81 -0.20 -1.21 16 19 C 0.10 1.05 4.35 -66.86 -0.29 0.76 16 20 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 21 C 0.44 5.99 2.76 37.16 0.10 6.09 16 22 F -0.18 -2.17 17.32 2.25 0.04 -2.13 16 23 F -0.18 -2.63 16.16 2.25 0.04 -2.59 16 24 F -0.15 -2.61 14.26 2.25 0.03 -2.58 16 25 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 26 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 30 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 33 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.83 7.24 -51.93 -0.38 0.45 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -32.68 314.08 -6.81 -39.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.50 Total: 0.64 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.09 Total: -21.82 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.09 Total: -37.91 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.60 Total: -41.58 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.11 Total: -7.30 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.53 Total: 48.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.68 -6.81 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451574377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.414 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds