Wall clock time and date at job start Tue Mar 31 2020 10:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47075 * 2 1 4 4 C 1.50695 * 109.46863 * 240.00056 * 2 1 3 5 5 H 1.08001 * 119.99527 * 239.99771 * 4 2 1 6 6 C 1.37880 * 120.00433 * 60.00283 * 4 2 1 7 7 N 1.31511 * 119.99524 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47278 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47179 * 119.99962 * 8 6 4 11 11 H 1.48500 * 109.47163 * 239.99830 * 8 6 4 12 12 C 1.53000 * 109.46953 * 119.99985 * 2 1 3 13 13 S 1.81403 * 109.47053 * 300.00054 * 12 2 1 14 14 O 1.42098 * 110.54448 * 68.37674 * 13 12 2 15 15 O 1.42095 * 110.54178 * 291.62286 * 13 12 2 16 16 N 1.65602 * 104.44828 * 179.97438 * 13 12 2 17 17 C 1.47577 * 134.49646 * 270.00260 * 16 13 12 18 18 C 1.53944 * 86.11824 * 204.63881 * 17 16 13 19 19 C 1.47584 * 134.49025 * 89.99976 * 16 13 12 20 20 H 1.09001 * 113.86858 * 269.67404 * 19 16 13 21 21 C 1.52997 * 113.76990 * 41.05686 * 19 16 13 22 22 F 1.39905 * 109.47157 * 175.99842 * 21 19 16 23 23 F 1.39900 * 109.47010 * 56.00233 * 21 19 16 24 24 F 1.39897 * 109.47422 * 295.99925 * 21 19 16 25 25 H 1.09005 * 109.47178 * 300.00283 * 1 2 3 26 26 H 1.08999 * 109.47338 * 59.99891 * 1 2 3 27 27 H 1.09002 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47001 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47801 * 299.99921 * 3 2 1 30 30 H 1.09005 * 109.47349 * 59.99822 * 3 2 1 31 31 H 0.97002 * 119.99738 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46959 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47019 * 59.99945 * 12 2 1 34 34 H 1.09000 * 113.77331 * 90.33201 * 17 16 13 35 35 H 1.09001 * 113.86785 * 318.95129 * 17 16 13 36 36 H 1.09001 * 113.74099 * 222.04135 * 18 17 16 37 37 H 1.08999 * 113.74156 * 90.73707 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1483 -2.2857 -3.6037 10 1 1.1678 -1.5865 -4.8164 11 1 3.1472 -0.1858 -4.8160 12 6 2.0400 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0528 -0.7408 3.9936 17 6 1.5789 -1.8946 4.7823 18 6 2.5009 -1.3757 5.9006 19 6 3.2984 -0.6796 4.7829 20 1 4.1078 -1.2866 4.3773 21 6 3.7373 0.7436 5.1330 22 9 4.8692 0.6940 5.9538 23 9 2.7010 1.3987 5.8069 24 9 4.0431 1.4396 3.9586 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1609 -3.4844 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 1.8819 -2.8593 4.3753 35 1 0.5187 -1.8525 5.0321 36 1 3.0563 -2.1620 6.4117 37 1 2.0120 -0.6841 6.5868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451574377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:03 Heat of formation + Delta-G solvation = -207.175033 kcal Electronic energy + Delta-G solvation = -26614.841041 eV Core-core repulsion = 22298.170038 eV Total energy + Delta-G solvation = -4316.671003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.00553 -48.57282 -48.46295 -40.24635 -38.15044 -38.11992 -36.90812 -33.65494 -30.21519 -29.43740 -28.20888 -27.73065 -27.27592 -24.58255 -22.31757 -21.32789 -20.23832 -19.45473 -19.30509 -19.08283 -18.20371 -17.84990 -17.13788 -16.85348 -16.71603 -15.58645 -15.38261 -15.26010 -15.15289 -15.09030 -14.92938 -14.70749 -14.67068 -14.64018 -14.46508 -14.32885 -13.84592 -13.44721 -13.23978 -12.99144 -12.91841 -12.86674 -12.77524 -12.53711 -12.21440 -12.19892 -12.07326 -11.97425 -11.90002 -11.60537 -11.40424 -10.71301 -10.44657 -10.17866 -8.05141 -6.24291 -0.75546 1.42056 1.44729 1.49637 1.54560 1.75942 2.42604 2.77072 2.83454 2.92506 2.95499 3.17288 3.22525 3.47425 3.69571 4.01343 4.03496 4.09451 4.44117 4.56177 4.63237 4.75966 4.81750 4.83200 4.93889 4.95292 5.06666 5.12984 5.29867 5.35751 5.47526 5.62104 5.93259 6.08062 6.31056 6.80794 7.44302 8.95066 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.004548 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.499409 B = 6154.794025 C = 6345.360242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.068 3.932 3 C -0.157 4.157 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.584 4.584 13 S 2.609 3.391 14 O -0.983 6.983 15 O -0.972 6.972 16 N -1.038 6.038 17 C 0.118 3.882 18 C -0.117 4.117 19 C 0.098 3.902 20 H 0.177 0.823 21 C 0.429 3.571 22 F -0.174 7.174 23 F -0.190 7.190 24 F -0.180 7.180 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -8.837 18.169 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 C -0.215 4.215 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.716 4.716 13 S 2.710 3.290 14 O -0.974 6.974 15 O -0.962 6.962 16 N -0.877 5.877 17 C -0.005 4.005 18 C -0.157 4.157 19 C -0.010 4.010 20 H 0.194 0.806 21 C 0.374 3.626 22 F -0.155 7.155 23 F -0.172 7.172 24 F -0.161 7.161 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.164 0.836 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.412 -7.795 17.973 20.324 hybrid contribution 0.496 0.087 -1.626 1.703 sum 5.908 -7.708 16.347 19.014 Atomic orbital electron populations 1.22194 0.97777 1.00479 1.01175 1.17936 0.92311 0.92130 0.91052 1.22173 0.99648 0.98462 1.01187 1.21315 1.31617 1.12276 0.90307 0.91759 1.25716 0.95164 0.95656 1.01818 1.69960 1.37237 1.23790 1.23828 0.85527 0.78064 0.78718 0.79447 1.18762 1.20850 1.21038 1.30502 1.12262 1.13334 1.15524 1.04972 0.73983 0.74962 0.75062 1.93496 1.30805 1.87001 1.86069 1.93585 1.78007 1.38960 1.85696 1.60615 1.30458 1.48489 1.48136 1.23200 1.01211 0.88744 0.87317 1.23724 0.96112 1.01092 0.94727 1.24175 0.91905 0.89801 0.95128 0.80597 1.21237 0.75186 0.91260 0.74931 1.93184 1.52240 1.96836 1.73287 1.93139 1.59172 1.83938 1.80940 1.93311 1.92958 1.82071 1.47786 0.95214 0.91100 0.93977 0.94345 0.91212 0.95032 0.92922 0.84832 0.84512 0.85353 0.89044 0.83592 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.98 7.77 71.98 0.56 -7.42 16 2 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 3 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 4 C -0.52 -26.91 8.01 25.60 0.21 -26.70 16 5 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 6 C 0.02 0.84 5.15 84.66 0.44 1.27 16 7 N -0.91 -50.89 9.35 21.45 0.20 -50.69 16 8 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C -0.58 -22.00 5.12 71.98 0.37 -21.63 16 13 S 2.61 96.06 4.97 -56.49 -0.28 95.78 16 14 O -0.98 -41.42 15.64 -127.65 -2.00 -43.41 16 15 O -0.97 -41.46 12.10 -127.65 -1.55 -43.00 16 16 N -1.04 -25.10 3.83 -508.44 -1.95 -27.04 16 17 C 0.12 1.63 8.91 86.48 0.77 2.40 16 18 C -0.12 -1.19 7.74 31.25 0.24 -0.95 16 19 C 0.10 1.71 4.35 45.09 0.20 1.91 16 20 H 0.18 1.65 8.14 -2.39 -0.02 1.63 16 21 C 0.43 10.88 2.76 71.98 0.20 11.08 16 22 F -0.17 -3.73 17.32 44.97 0.78 -2.95 16 23 F -0.19 -5.54 16.16 44.97 0.73 -4.81 16 24 F -0.18 -6.05 14.26 44.97 0.64 -5.41 16 25 H 0.03 1.44 5.46 -2.38 -0.01 1.42 16 26 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 30 H 0.03 1.54 5.46 -2.38 -0.01 1.53 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.13 4.51 8.14 -2.39 -0.02 4.49 16 33 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.10 1.21 7.24 -2.39 -0.02 1.19 16 Total: -1.00 -73.51 314.08 3.21 -70.29 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.10 Total: 11.32 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 3.51 Total: -44.19 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.75 Total: -77.73 kcal Atomic # 8 Polarization: -82.87 SS G_CDS: -3.54 Total: -86.42 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 2.15 Total: -13.17 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 96.06 SS G_CDS: -0.28 Total: 95.78 kcal Total: -73.51 3.21 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451574377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.881 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds