Wall clock time and date at job start Tue Mar 31 2020 10:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 112.94496 * 2 1 4 4 C 1.53000 * 109.46679 * 54.13805 * 3 2 1 5 5 F 1.39899 * 109.47368 * 56.11552 * 4 3 2 6 6 F 1.39902 * 109.47205 * 176.11751 * 4 3 2 7 7 F 1.39902 * 109.47094 * 296.11507 * 4 3 2 8 8 C 1.53952 * 113.74076 * 228.27517 * 2 1 3 9 9 N 1.47582 * 86.11310 * 222.04519 * 8 2 1 10 10 S 1.65597 * 134.48955 * 204.63674 * 9 8 2 11 11 O 1.42104 * 104.27956 * 26.07171 * 10 9 8 12 12 O 1.42098 * 104.27997 * 153.92912 * 10 9 8 13 13 C 1.81404 * 104.45203 * 270.00124 * 10 9 8 14 14 C 1.52992 * 109.47268 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.47512 * 179.97438 * 14 13 10 16 16 H 1.08006 * 119.99552 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00727 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99451 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47009 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47146 * 119.99980 * 19 17 15 22 22 H 1.48506 * 109.46869 * 240.00363 * 19 17 15 23 23 C 1.47575 * 91.01648 * 24.64026 * 9 8 2 24 24 H 1.09002 * 109.47375 * 280.05813 * 1 2 3 25 25 H 1.08998 * 109.47437 * 160.06162 * 1 2 3 26 26 H 1.09001 * 109.47449 * 40.05802 * 1 2 3 27 27 H 1.08994 * 109.47101 * 174.13265 * 3 2 1 28 28 H 1.09003 * 109.47312 * 294.13799 * 3 2 1 29 29 H 1.09000 * 113.76732 * 336.34163 * 8 2 1 30 30 H 1.08994 * 113.77302 * 107.73828 * 8 2 1 31 31 H 1.08997 * 109.46704 * 300.00251 * 13 10 9 32 32 H 1.08997 * 109.46673 * 59.99859 * 13 10 9 33 33 H 1.09002 * 109.47431 * 300.00263 * 14 13 10 34 34 H 1.09003 * 109.47393 * 59.99820 * 14 13 10 35 35 H 0.97001 * 119.99664 * 179.97438 * 18 17 15 36 36 H 1.09005 * 113.76850 * 221.05886 * 23 9 8 37 37 H 1.08997 * 113.77212 * 89.66231 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1264 1.4089 0.0000 4 6 1.5469 2.2079 1.1691 5 9 1.7850 1.5231 2.3655 6 9 2.1573 3.4657 1.2223 7 9 0.1686 2.3658 0.9884 8 6 2.1497 -0.9379 -1.0518 9 7 3.1104 -1.3200 0.0014 10 16 4.6484 -1.9336 0.0021 11 8 5.1982 -1.5028 -1.2355 12 8 5.1983 -1.5000 1.2385 13 6 4.4180 -3.7330 0.0041 14 6 5.7839 -4.4221 0.0055 15 6 5.5925 -5.9169 0.0079 16 1 4.5960 -6.3337 0.0088 17 6 6.6891 -6.7525 0.0089 18 7 7.9025 -6.2449 0.0083 19 14 6.4518 -8.6053 0.0111 20 1 5.0002 -8.9184 0.0120 21 1 7.0833 -9.1867 -1.2007 22 1 7.0832 -9.1838 1.2244 23 6 2.1498 -0.9355 1.0537 24 1 -0.3634 0.1795 1.0119 25 1 -0.3634 -0.9660 -0.3504 26 1 -0.3634 0.7866 -0.6614 27 1 3.2094 1.3450 0.1050 28 1 1.8811 1.9074 -0.9378 29 1 1.4902 -1.7492 -1.3600 30 1 2.6048 -0.4151 -1.8929 31 1 3.8621 -4.0270 0.8945 32 1 3.8621 -4.0290 -0.8855 33 1 6.3401 -4.1281 -0.8846 34 1 6.3394 -4.1260 0.8953 35 1 8.6741 -6.8327 0.0094 36 1 2.6050 -0.4107 1.8937 37 1 1.4903 -1.7460 1.3640 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452105515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:46 Heat of formation + Delta-G solvation = -204.242800 kcal Electronic energy + Delta-G solvation = -25165.949057 eV Core-core repulsion = 20849.405205 eV Total energy + Delta-G solvation = -4316.543852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.34346 -47.83539 -47.79209 -40.09083 -36.60471 -35.47365 -33.91121 -32.98423 -31.17707 -29.53298 -26.51280 -26.01064 -25.42448 -23.80663 -21.54675 -19.70712 -18.76976 -18.57153 -18.50632 -17.51506 -17.14837 -16.49681 -16.01545 -15.80793 -15.11025 -15.00578 -14.65771 -14.57862 -14.48390 -14.24788 -14.07364 -13.94078 -13.84362 -13.47865 -13.22869 -12.72889 -12.57553 -12.41246 -12.34306 -12.12445 -11.78923 -11.69594 -11.64054 -11.57644 -11.11394 -10.98628 -10.72848 -10.68016 -10.42892 -10.41675 -9.83323 -9.41114 -8.86413 -8.52961 -6.14766 -4.20487 0.68061 2.52069 2.87175 3.23575 3.30785 3.34156 3.46842 3.67877 3.78368 4.03095 4.24566 4.35324 4.36505 4.39684 4.47249 4.67625 5.02738 5.20346 5.22472 5.26761 5.32357 5.36805 5.42782 5.46932 5.59170 5.67687 5.72285 5.89625 6.02508 6.36400 6.46138 7.27083 7.33012 7.78274 8.15080 8.83079 9.44456 10.96303 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003093 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.515928 B = 9051.721923 C = 9315.664267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.145 4.145 4 C 0.454 3.546 5 F -0.179 7.179 6 F -0.186 7.186 7 F -0.182 7.182 8 C 0.141 3.859 9 N -1.043 6.043 10 S 2.605 3.395 11 O -0.960 6.960 12 O -0.959 6.959 13 C -0.591 4.591 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.127 3.873 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.093 0.907 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 15.635 -0.427 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.183 4.183 4 C 0.400 3.600 5 F -0.160 7.160 6 F -0.167 7.167 7 F -0.164 7.164 8 C 0.015 3.985 9 N -0.879 5.879 10 S 2.705 3.295 11 O -0.951 6.951 12 O -0.949 6.949 13 C -0.724 4.724 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.001 3.999 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.563 16.079 -0.396 23.087 hybrid contribution -0.436 -1.559 0.206 1.632 sum -16.999 14.521 -0.190 22.358 Atomic orbital electron populations 1.21962 0.92064 1.03089 1.03159 1.22407 0.96242 0.92662 0.99178 1.22679 1.03966 0.94941 0.96679 1.20549 0.76151 0.78414 0.84847 1.93178 1.94103 1.79179 1.49580 1.93196 1.83040 1.43707 1.96780 1.93179 1.32147 1.95745 1.95296 1.22786 0.88807 0.95581 0.91284 1.60640 1.30965 1.80816 1.15522 1.05317 0.71698 0.78368 0.74069 1.93536 1.75142 1.81031 1.45404 1.93544 1.75089 1.80887 1.45422 1.30516 1.10735 1.21290 1.09873 1.18973 0.86450 0.96942 0.98842 1.21036 0.93003 0.89826 1.52079 0.92024 1.25080 0.95137 0.99434 0.94884 1.69970 0.97810 1.35426 1.49621 0.86403 0.78311 0.84716 0.77792 1.19656 1.20768 1.20763 1.23007 0.88966 0.96107 0.91775 0.91458 0.91298 0.91420 0.86679 0.86470 0.89012 0.89348 0.86366 0.86390 0.94877 0.94862 0.92559 0.88857 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 7.70 37.15 0.29 -0.58 16 2 C -0.10 -0.81 0.95 -153.59 -0.15 -0.96 16 3 C -0.14 -1.14 4.82 -26.73 -0.13 -1.27 16 4 C 0.45 4.07 3.06 37.16 0.11 4.18 16 5 F -0.18 -1.85 14.88 2.25 0.03 -1.82 16 6 F -0.19 -1.87 17.32 2.25 0.04 -1.83 16 7 F -0.18 -1.54 14.31 2.25 0.03 -1.51 16 8 C 0.14 1.26 8.05 -2.97 -0.02 1.24 16 9 N -1.04 -13.17 3.84 -118.41 -0.45 -13.63 16 10 S 2.60 46.46 5.93 -107.50 -0.64 45.82 16 11 O -0.96 -19.60 18.02 -57.54 -1.04 -20.64 16 12 O -0.96 -19.96 18.02 -57.54 -1.04 -21.00 16 13 C -0.59 -11.30 6.12 37.15 0.23 -11.07 16 14 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 1.29 7.57 -2.98 -0.02 1.26 16 24 H 0.07 0.43 7.30 -51.93 -0.38 0.05 16 25 H 0.07 0.35 7.78 -51.93 -0.40 -0.05 16 26 H 0.07 0.36 7.58 -51.93 -0.39 -0.03 16 27 H 0.11 1.06 8.01 -51.93 -0.42 0.64 16 28 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 30 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.09 1.03 6.38 -51.93 -0.33 0.70 16 37 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -34.93 332.13 -7.41 -42.34 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.83 Total: -3.28 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -0.24 Total: -19.85 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.28 Total: -39.40 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.07 Total: -41.64 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.10 Total: -5.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.46 SS G_CDS: -0.64 Total: 45.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.93 -7.41 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.901 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds