Wall clock time and date at job start Tue Mar 31 2020 10:31:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53000 * 112.94496 * 2 1
4 4 C 1.53000 * 109.46679 * 54.13805 * 3 2 1
5 5 F 1.39899 * 109.47368 * 56.11552 * 4 3 2
6 6 F 1.39902 * 109.47205 * 176.11751 * 4 3 2
7 7 F 1.39902 * 109.47094 * 296.11507 * 4 3 2
8 8 C 1.53952 * 113.74076 * 228.27517 * 2 1 3
9 9 N 1.47582 * 86.11310 * 222.04519 * 8 2 1
10 10 S 1.65597 * 134.48955 * 204.63674 * 9 8 2
11 11 O 1.42104 * 104.27956 * 26.07171 * 10 9 8
12 12 O 1.42098 * 104.27997 * 153.92912 * 10 9 8
13 13 C 1.81404 * 104.45203 * 270.00124 * 10 9 8
14 14 C 1.52992 * 109.47268 * 180.02562 * 13 10 9
15 15 C 1.50697 * 109.47512 * 179.97438 * 14 13 10
16 16 H 1.08006 * 119.99552 * 359.97438 * 15 14 13
17 17 C 1.37873 * 120.00727 * 179.97438 * 15 14 13
18 18 N 1.31522 * 119.99451 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 120.00443 * 180.02562 * 17 15 14
20 20 H 1.48499 * 109.47009 * 359.97438 * 19 17 15
21 21 H 1.48496 * 109.47146 * 119.99980 * 19 17 15
22 22 H 1.48506 * 109.46869 * 240.00363 * 19 17 15
23 23 C 1.47575 * 91.01648 * 24.64026 * 9 8 2
24 24 H 1.09002 * 109.47375 * 280.05813 * 1 2 3
25 25 H 1.08998 * 109.47437 * 160.06162 * 1 2 3
26 26 H 1.09001 * 109.47449 * 40.05802 * 1 2 3
27 27 H 1.08994 * 109.47101 * 174.13265 * 3 2 1
28 28 H 1.09003 * 109.47312 * 294.13799 * 3 2 1
29 29 H 1.09000 * 113.76732 * 336.34163 * 8 2 1
30 30 H 1.08994 * 113.77302 * 107.73828 * 8 2 1
31 31 H 1.08997 * 109.46704 * 300.00251 * 13 10 9
32 32 H 1.08997 * 109.46673 * 59.99859 * 13 10 9
33 33 H 1.09002 * 109.47431 * 300.00263 * 14 13 10
34 34 H 1.09003 * 109.47393 * 59.99820 * 14 13 10
35 35 H 0.97001 * 119.99664 * 179.97438 * 18 17 15
36 36 H 1.09005 * 113.76850 * 221.05886 * 23 9 8
37 37 H 1.08997 * 113.77212 * 89.66231 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.1264 1.4089 0.0000
4 6 1.5469 2.2079 1.1691
5 9 1.7850 1.5231 2.3655
6 9 2.1573 3.4657 1.2223
7 9 0.1686 2.3658 0.9884
8 6 2.1497 -0.9379 -1.0518
9 7 3.1104 -1.3200 0.0014
10 16 4.6484 -1.9336 0.0021
11 8 5.1982 -1.5028 -1.2355
12 8 5.1983 -1.5000 1.2385
13 6 4.4180 -3.7330 0.0041
14 6 5.7839 -4.4221 0.0055
15 6 5.5925 -5.9169 0.0079
16 1 4.5960 -6.3337 0.0088
17 6 6.6891 -6.7525 0.0089
18 7 7.9025 -6.2449 0.0083
19 14 6.4518 -8.6053 0.0111
20 1 5.0002 -8.9184 0.0120
21 1 7.0833 -9.1867 -1.2007
22 1 7.0832 -9.1838 1.2244
23 6 2.1498 -0.9355 1.0537
24 1 -0.3634 0.1795 1.0119
25 1 -0.3634 -0.9660 -0.3504
26 1 -0.3634 0.7866 -0.6614
27 1 3.2094 1.3450 0.1050
28 1 1.8811 1.9074 -0.9378
29 1 1.4902 -1.7492 -1.3600
30 1 2.6048 -0.4151 -1.8929
31 1 3.8621 -4.0270 0.8945
32 1 3.8621 -4.0290 -0.8855
33 1 6.3401 -4.1281 -0.8846
34 1 6.3394 -4.1260 0.8953
35 1 8.6741 -6.8327 0.0094
36 1 2.6050 -0.4107 1.8937
37 1 1.4903 -1.7460 1.3640
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000452105515.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:31:45
Heat of formation + Delta-G solvation = -229.210822 kcal
Electronic energy + Delta-G solvation = -25167.031752 eV
Core-core repulsion = 20849.405205 eV
Total energy + Delta-G solvation = -4317.626547 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.090 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-51.06697 -48.57501 -48.51525 -40.86653 -38.15493 -37.02516 -35.91414 -33.74529
-33.13860 -30.15424 -27.66334 -27.26969 -26.58923 -24.53981 -23.45034 -20.46509
-19.79036 -19.47483 -19.26784 -19.02543 -18.22786 -17.83949 -17.26769 -17.14809
-16.54604 -16.18989 -15.75070 -15.52386 -15.38823 -15.07351 -14.98271 -14.87157
-14.69036 -14.60911 -14.48942 -14.02367 -13.75648 -13.45091 -13.26039 -13.22679
-13.17337 -13.04865 -12.96640 -12.80642 -12.79176 -12.28359 -12.26194 -12.12139
-11.81518 -11.54689 -11.35446 -11.17575 -10.67964 -9.98452 -8.28289 -6.42917
-0.73892 1.39605 1.40496 1.53821 1.68059 1.83348 2.36368 2.77293
2.84763 3.01409 3.04053 3.05556 3.13272 3.36971 3.57805 3.78095
4.03014 4.04035 4.07385 4.44066 4.57474 4.60388 4.67432 4.70761
4.72875 4.92395 4.93759 5.06161 5.13161 5.24228 5.25672 5.40343
5.56161 5.65889 6.03720 6.70980 7.27616 8.84212
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.031720 B = 0.003093 C = 0.003005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 882.515928 B = 9051.721923 C = 9315.664267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.088 4.088
3 C -0.147 4.147
4 C 0.454 3.546
5 F -0.190 7.190
6 F -0.194 7.194
7 F -0.176 7.176
8 C 0.137 3.863
9 N -1.042 6.042
10 S 2.630 3.370
11 O -0.991 6.991
12 O -0.996 6.996
13 C -0.591 4.591
14 C 0.019 3.981
15 C -0.539 4.539
16 H 0.076 0.924
17 C -0.005 4.005
18 N -0.935 5.935
19 Si 0.976 3.024
20 H -0.255 1.255
21 H -0.277 1.277
22 H -0.278 1.278
23 C 0.116 3.884
24 H 0.064 0.936
25 H 0.085 0.915
26 H 0.079 0.921
27 H 0.098 0.902
28 H 0.146 0.854
29 H 0.123 0.877
30 H 0.093 0.907
31 H 0.137 0.863
32 H 0.141 0.859
33 H 0.006 0.994
34 H 0.003 0.997
35 H 0.268 0.732
36 H 0.079 0.921
37 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.849 15.112 -1.097 25.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.091 4.091
3 C -0.185 4.185
4 C 0.401 3.599
5 F -0.171 7.171
6 F -0.176 7.176
7 F -0.158 7.158
8 C 0.013 3.987
9 N -0.882 5.882
10 S 2.730 3.270
11 O -0.982 6.982
12 O -0.987 6.987
13 C -0.723 4.723
14 C -0.020 4.020
15 C -0.578 4.578
16 H 0.094 0.906
17 C -0.204 4.204
18 N -0.574 5.574
19 Si 0.800 3.200
20 H -0.178 1.178
21 H -0.203 1.203
22 H -0.204 1.204
23 C -0.009 4.009
24 H 0.083 0.917
25 H 0.104 0.896
26 H 0.098 0.902
27 H 0.117 0.883
28 H 0.164 0.836
29 H 0.141 0.859
30 H 0.111 0.889
31 H 0.155 0.845
32 H 0.159 0.841
33 H 0.024 0.976
34 H 0.022 0.978
35 H 0.076 0.924
36 H 0.097 0.903
37 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -19.656 15.544 -1.069 25.082
hybrid contribution 0.431 -1.278 0.429 1.415
sum -19.225 14.266 -0.640 23.948
Atomic orbital electron populations
1.21956 0.89753 1.04581 1.03456 1.22308 0.97625 0.91751 0.97396
1.22776 1.02957 0.95324 0.97485 1.20696 0.76371 0.78124 0.84749
1.93161 1.94206 1.79361 1.50396 1.93180 1.83265 1.44331 1.96806
1.93189 1.31665 1.95710 1.95222 1.23251 0.87878 0.96711 0.90881
1.60284 1.30309 1.79282 1.18344 1.04155 0.72847 0.77413 0.72563
1.93485 1.77013 1.81180 1.46481 1.93488 1.77145 1.81142 1.46896
1.30442 1.07189 1.22752 1.11912 1.18828 0.89702 0.97315 0.96159
1.21547 0.93727 0.91021 1.51510 0.90624 1.26157 0.94737 1.05159
0.94314 1.70117 0.98913 1.37530 1.50888 0.85229 0.79115 0.77845
0.77837 1.17844 1.20254 1.20376 1.23410 0.88431 0.97516 0.91526
0.91702 0.89620 0.90241 0.88308 0.83642 0.85921 0.88870 0.84497
0.84127 0.97608 0.97836 0.92360 0.90259 0.86531
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 7.70 71.98 0.55 -0.56 16
2 C -0.09 -1.13 0.95 -51.52 -0.05 -1.18 16
3 C -0.15 -2.04 4.82 30.59 0.15 -1.89 16
4 C 0.45 7.45 3.06 71.98 0.22 7.67 16
5 F -0.19 -3.77 14.88 44.97 0.67 -3.10 16
6 F -0.19 -3.73 17.32 44.97 0.78 -2.95 16
7 F -0.18 -2.56 14.31 44.97 0.64 -1.92 16
8 C 0.14 2.01 8.05 86.48 0.70 2.70 16
9 N -1.04 -24.57 3.84 -528.54 -2.03 -26.60 16
10 S 2.63 94.54 5.93 -56.49 -0.34 94.20 16
11 O -0.99 -41.08 18.02 -127.65 -2.30 -43.38 16
12 O -1.00 -42.78 18.02 -127.65 -2.30 -45.08 16
13 C -0.59 -22.47 6.12 71.98 0.44 -22.03 16
14 C 0.02 1.00 4.98 29.84 0.15 1.15 16
15 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16
16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16
17 C -0.01 -0.31 5.46 84.65 0.46 0.16 16
18 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16
19 Si 0.98 43.30 29.54 68.60 2.03 45.32 16
20 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16
21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16
22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16
23 C 0.12 2.09 7.57 86.48 0.65 2.75 16
24 H 0.06 0.60 7.30 -2.39 -0.02 0.58 16
25 H 0.08 0.44 7.78 -2.39 -0.02 0.42 16
26 H 0.08 0.50 7.58 -2.39 -0.02 0.48 16
27 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16
28 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16
29 H 0.12 1.10 7.85 -2.39 -0.02 1.08 16
30 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16
31 H 0.14 4.60 8.14 -2.39 -0.02 4.59 16
32 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16
33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16
35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16
36 H 0.08 1.69 6.38 -2.38 -0.02 1.67 16
37 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16
Total: -1.00 -78.18 332.13 2.03 -76.15
By element:
Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.46 kcal
Atomic # 6 Polarization: -44.62 SS G_CDS: 3.51 Total: -41.11 kcal
Atomic # 7 Polarization: -81.85 SS G_CDS: -1.75 Total: -83.60 kcal
Atomic # 8 Polarization: -83.86 SS G_CDS: -4.60 Total: -88.46 kcal
Atomic # 9 Polarization: -10.06 SS G_CDS: 2.09 Total: -7.97 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal
Atomic # 16 Polarization: 94.54 SS G_CDS: -0.34 Total: 94.20 kcal
Total: -78.18 2.03 -76.15 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000452105515.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -153.060 kcal
(2) G-P(sol) polarization free energy of solvation -78.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -229.211 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds