Wall clock time and date at job start Tue Mar 31 2020 10:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 112.94496 * 2 1 4 4 C 1.53000 * 109.46679 * 54.13805 * 3 2 1 5 5 F 1.39899 * 109.47368 * 56.11552 * 4 3 2 6 6 F 1.39902 * 109.47205 * 176.11751 * 4 3 2 7 7 F 1.39902 * 109.47094 * 296.11507 * 4 3 2 8 8 C 1.53952 * 113.74076 * 228.27517 * 2 1 3 9 9 N 1.47582 * 86.11310 * 222.04519 * 8 2 1 10 10 S 1.65597 * 134.48955 * 204.63674 * 9 8 2 11 11 O 1.42104 * 104.27956 * 26.07171 * 10 9 8 12 12 O 1.42098 * 104.27997 * 153.92912 * 10 9 8 13 13 C 1.81404 * 104.45203 * 270.00124 * 10 9 8 14 14 C 1.52992 * 109.47268 * 180.02562 * 13 10 9 15 15 C 1.50697 * 109.47512 * 179.97438 * 14 13 10 16 16 H 1.08006 * 119.99552 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00727 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99451 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47009 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47146 * 119.99980 * 19 17 15 22 22 H 1.48506 * 109.46869 * 240.00363 * 19 17 15 23 23 C 1.47575 * 91.01648 * 24.64026 * 9 8 2 24 24 H 1.09002 * 109.47375 * 280.05813 * 1 2 3 25 25 H 1.08998 * 109.47437 * 160.06162 * 1 2 3 26 26 H 1.09001 * 109.47449 * 40.05802 * 1 2 3 27 27 H 1.08994 * 109.47101 * 174.13265 * 3 2 1 28 28 H 1.09003 * 109.47312 * 294.13799 * 3 2 1 29 29 H 1.09000 * 113.76732 * 336.34163 * 8 2 1 30 30 H 1.08994 * 113.77302 * 107.73828 * 8 2 1 31 31 H 1.08997 * 109.46704 * 300.00251 * 13 10 9 32 32 H 1.08997 * 109.46673 * 59.99859 * 13 10 9 33 33 H 1.09002 * 109.47431 * 300.00263 * 14 13 10 34 34 H 1.09003 * 109.47393 * 59.99820 * 14 13 10 35 35 H 0.97001 * 119.99664 * 179.97438 * 18 17 15 36 36 H 1.09005 * 113.76850 * 221.05886 * 23 9 8 37 37 H 1.08997 * 113.77212 * 89.66231 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1264 1.4089 0.0000 4 6 1.5469 2.2079 1.1691 5 9 1.7850 1.5231 2.3655 6 9 2.1573 3.4657 1.2223 7 9 0.1686 2.3658 0.9884 8 6 2.1497 -0.9379 -1.0518 9 7 3.1104 -1.3200 0.0014 10 16 4.6484 -1.9336 0.0021 11 8 5.1982 -1.5028 -1.2355 12 8 5.1983 -1.5000 1.2385 13 6 4.4180 -3.7330 0.0041 14 6 5.7839 -4.4221 0.0055 15 6 5.5925 -5.9169 0.0079 16 1 4.5960 -6.3337 0.0088 17 6 6.6891 -6.7525 0.0089 18 7 7.9025 -6.2449 0.0083 19 14 6.4518 -8.6053 0.0111 20 1 5.0002 -8.9184 0.0120 21 1 7.0833 -9.1867 -1.2007 22 1 7.0832 -9.1838 1.2244 23 6 2.1498 -0.9355 1.0537 24 1 -0.3634 0.1795 1.0119 25 1 -0.3634 -0.9660 -0.3504 26 1 -0.3634 0.7866 -0.6614 27 1 3.2094 1.3450 0.1050 28 1 1.8811 1.9074 -0.9378 29 1 1.4902 -1.7492 -1.3600 30 1 2.6048 -0.4151 -1.8929 31 1 3.8621 -4.0270 0.8945 32 1 3.8621 -4.0290 -0.8855 33 1 6.3401 -4.1281 -0.8846 34 1 6.3394 -4.1260 0.8953 35 1 8.6741 -6.8327 0.0094 36 1 2.6050 -0.4107 1.8937 37 1 1.4903 -1.7460 1.3640 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452105515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:45 Heat of formation + Delta-G solvation = -229.210822 kcal Electronic energy + Delta-G solvation = -25167.031752 eV Core-core repulsion = 20849.405205 eV Total energy + Delta-G solvation = -4317.626547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.06697 -48.57501 -48.51525 -40.86653 -38.15493 -37.02516 -35.91414 -33.74529 -33.13860 -30.15424 -27.66334 -27.26969 -26.58923 -24.53981 -23.45034 -20.46509 -19.79036 -19.47483 -19.26784 -19.02543 -18.22786 -17.83949 -17.26769 -17.14809 -16.54604 -16.18989 -15.75070 -15.52386 -15.38823 -15.07351 -14.98271 -14.87157 -14.69036 -14.60911 -14.48942 -14.02367 -13.75648 -13.45091 -13.26039 -13.22679 -13.17337 -13.04865 -12.96640 -12.80642 -12.79176 -12.28359 -12.26194 -12.12139 -11.81518 -11.54689 -11.35446 -11.17575 -10.67964 -9.98452 -8.28289 -6.42917 -0.73892 1.39605 1.40496 1.53821 1.68059 1.83348 2.36368 2.77293 2.84763 3.01409 3.04053 3.05556 3.13272 3.36971 3.57805 3.78095 4.03014 4.04035 4.07385 4.44066 4.57474 4.60388 4.67432 4.70761 4.72875 4.92395 4.93759 5.06161 5.13161 5.24228 5.25672 5.40343 5.56161 5.65889 6.03720 6.70980 7.27616 8.84212 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.003093 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.515928 B = 9051.721923 C = 9315.664267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.454 3.546 5 F -0.190 7.190 6 F -0.194 7.194 7 F -0.176 7.176 8 C 0.137 3.863 9 N -1.042 6.042 10 S 2.630 3.370 11 O -0.991 6.991 12 O -0.996 6.996 13 C -0.591 4.591 14 C 0.019 3.981 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.976 3.024 20 H -0.255 1.255 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.116 3.884 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.006 0.994 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 15.112 -1.097 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.185 4.185 4 C 0.401 3.599 5 F -0.171 7.171 6 F -0.176 7.176 7 F -0.158 7.158 8 C 0.013 3.987 9 N -0.882 5.882 10 S 2.730 3.270 11 O -0.982 6.982 12 O -0.987 6.987 13 C -0.723 4.723 14 C -0.020 4.020 15 C -0.578 4.578 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.009 4.009 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.164 0.836 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.024 0.976 34 H 0.022 0.978 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.656 15.544 -1.069 25.082 hybrid contribution 0.431 -1.278 0.429 1.415 sum -19.225 14.266 -0.640 23.948 Atomic orbital electron populations 1.21956 0.89753 1.04581 1.03456 1.22308 0.97625 0.91751 0.97396 1.22776 1.02957 0.95324 0.97485 1.20696 0.76371 0.78124 0.84749 1.93161 1.94206 1.79361 1.50396 1.93180 1.83265 1.44331 1.96806 1.93189 1.31665 1.95710 1.95222 1.23251 0.87878 0.96711 0.90881 1.60284 1.30309 1.79282 1.18344 1.04155 0.72847 0.77413 0.72563 1.93485 1.77013 1.81180 1.46481 1.93488 1.77145 1.81142 1.46896 1.30442 1.07189 1.22752 1.11912 1.18828 0.89702 0.97315 0.96159 1.21547 0.93727 0.91021 1.51510 0.90624 1.26157 0.94737 1.05159 0.94314 1.70117 0.98913 1.37530 1.50888 0.85229 0.79115 0.77845 0.77837 1.17844 1.20254 1.20376 1.23410 0.88431 0.97516 0.91526 0.91702 0.89620 0.90241 0.88308 0.83642 0.85921 0.88870 0.84497 0.84127 0.97608 0.97836 0.92360 0.90259 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.70 71.98 0.55 -0.56 16 2 C -0.09 -1.13 0.95 -51.52 -0.05 -1.18 16 3 C -0.15 -2.04 4.82 30.59 0.15 -1.89 16 4 C 0.45 7.45 3.06 71.98 0.22 7.67 16 5 F -0.19 -3.77 14.88 44.97 0.67 -3.10 16 6 F -0.19 -3.73 17.32 44.97 0.78 -2.95 16 7 F -0.18 -2.56 14.31 44.97 0.64 -1.92 16 8 C 0.14 2.01 8.05 86.48 0.70 2.70 16 9 N -1.04 -24.57 3.84 -528.54 -2.03 -26.60 16 10 S 2.63 94.54 5.93 -56.49 -0.34 94.20 16 11 O -0.99 -41.08 18.02 -127.65 -2.30 -43.38 16 12 O -1.00 -42.78 18.02 -127.65 -2.30 -45.08 16 13 C -0.59 -22.47 6.12 71.98 0.44 -22.03 16 14 C 0.02 1.00 4.98 29.84 0.15 1.15 16 15 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 17 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 18 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 19 Si 0.98 43.30 29.54 68.60 2.03 45.32 16 20 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.12 2.09 7.57 86.48 0.65 2.75 16 24 H 0.06 0.60 7.30 -2.39 -0.02 0.58 16 25 H 0.08 0.44 7.78 -2.39 -0.02 0.42 16 26 H 0.08 0.50 7.58 -2.39 -0.02 0.48 16 27 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 28 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.12 1.10 7.85 -2.39 -0.02 1.08 16 30 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 31 H 0.14 4.60 8.14 -2.39 -0.02 4.59 16 32 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 1.69 6.38 -2.38 -0.02 1.67 16 37 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -78.18 332.13 2.03 -76.15 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.46 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.51 Total: -41.11 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.75 Total: -83.60 kcal Atomic # 8 Polarization: -83.86 SS G_CDS: -4.60 Total: -88.46 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.09 Total: -7.97 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 94.54 SS G_CDS: -0.34 Total: 94.20 kcal Total: -78.18 2.03 -76.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.060 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds