Wall clock time and date at job start Tue Mar 31 2020 10:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39898 * 109.47343 * 2 1 4 4 F 1.39904 * 109.47063 * 240.00406 * 2 1 3 5 5 C 1.53001 * 109.47419 * 120.00235 * 2 1 3 6 6 C 1.53004 * 109.47164 * 179.97438 * 5 2 1 7 7 N 1.46492 * 109.47018 * 180.02562 * 6 5 2 8 8 C 1.34784 * 120.00217 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 6 10 10 C 1.47860 * 119.99972 * 179.97438 * 8 7 6 11 11 C 1.39661 * 120.10534 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.04191 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67598 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46950 * 90.00202 * 20 18 16 22 22 H 1.48495 * 109.46650 * 209.99961 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99842 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.09004 * 109.47184 * 299.99864 * 1 2 3 26 26 H 1.09003 * 109.47548 * 59.99275 * 1 2 3 27 27 H 1.08998 * 109.47535 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46773 * 60.00358 * 5 2 1 29 29 H 1.08994 * 109.47379 * 299.99988 * 5 2 1 30 30 H 1.09005 * 109.46655 * 60.00207 * 6 5 2 31 31 H 1.09002 * 109.47164 * 300.00138 * 6 5 2 32 32 H 0.96996 * 120.00373 * 359.97438 * 7 6 5 33 33 H 1.08002 * 119.98248 * 0.02562 * 11 10 8 34 34 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.89818 * 180.31471 * 13 12 11 36 36 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7218 1.2488 7 7 4.0584 -1.4130 2.4446 8 6 5.3835 -1.5362 2.6578 9 8 6.1733 -1.0743 1.8577 10 6 5.8764 -2.2333 3.8650 11 6 4.9707 -2.7644 4.7861 12 6 5.4323 -3.4146 5.9130 13 6 6.7900 -3.5489 6.1318 14 6 7.7015 -3.0185 5.2236 15 16 9.4317 -3.1855 5.5115 16 6 9.7585 -1.6498 6.3111 17 1 8.9446 -0.9815 6.5502 18 6 11.0615 -1.2991 6.6335 19 7 12.0535 -2.1138 6.3426 20 14 11.4079 0.3288 7.4819 21 1 11.3578 0.1402 8.9540 22 1 12.7557 0.8139 7.0905 23 1 10.3855 1.3262 7.0755 24 6 7.2464 -2.3624 4.0873 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 -1.7490 1.2491 29 1 1.6767 -0.2076 2.1392 30 1 3.9337 0.3058 1.2486 31 1 3.9330 -1.2359 0.3588 32 1 3.4281 -1.7813 3.0833 33 1 3.9086 -2.6665 4.6166 34 1 4.7297 -3.8239 6.6237 35 1 7.1451 -4.0630 7.0128 36 1 12.9645 -1.8684 6.5678 37 1 7.9513 -1.9534 3.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452214608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:11 Heat of formation + Delta-G solvation = -127.051381 kcal Electronic energy + Delta-G solvation = -22560.669098 eV Core-core repulsion = 18678.241742 eV Total energy + Delta-G solvation = -3882.427356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.35605 -47.32788 -39.99281 -37.91833 -35.82791 -33.31841 -32.50925 -31.18850 -30.57728 -29.41337 -25.57282 -24.81830 -23.05307 -22.22658 -21.90126 -20.45123 -18.41736 -18.04861 -17.43358 -17.09993 -16.54016 -15.87960 -15.71710 -15.59071 -15.05637 -14.84908 -14.43013 -14.28043 -13.88498 -13.76886 -13.64326 -13.57559 -13.39485 -13.08134 -12.95026 -12.69815 -12.38345 -12.27926 -11.89642 -11.66292 -11.37068 -11.16310 -11.14434 -11.08348 -10.71182 -9.99399 -9.81321 -9.26341 -9.16698 -9.02974 -8.61314 -8.04364 -6.71822 -6.28727 -4.02829 1.13467 1.64297 2.83651 3.01475 3.19794 3.22944 3.28375 3.40234 3.46921 3.67244 3.91079 3.91917 4.07482 4.25225 4.52016 4.56943 4.82040 4.86525 5.04144 5.04455 5.07977 5.10052 5.20947 5.28368 5.47013 5.50138 5.56616 5.72133 5.85184 5.96071 6.21273 6.24022 6.55707 6.60730 6.91160 7.16400 7.40466 7.57433 8.23466 8.32505 9.17127 10.78019 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002556 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.697213 B =10951.049998 C =11573.582357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.292 3.708 3 F -0.198 7.198 4 F -0.198 7.198 5 C -0.175 4.175 6 C 0.117 3.883 7 N -0.732 5.732 8 C 0.564 3.436 9 O -0.530 6.530 10 C -0.154 4.154 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.106 4.106 15 S -0.035 6.035 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.018 4.018 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.399 0.601 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.270 0.730 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.401 0.510 -7.346 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.255 3.745 3 F -0.179 7.179 4 F -0.179 7.179 5 C -0.213 4.213 6 C -0.007 4.007 7 N -0.386 5.386 8 C 0.352 3.648 9 O -0.407 6.407 10 C -0.159 4.159 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.217 4.217 15 S 0.200 5.800 16 C -0.667 4.667 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.040 4.040 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.809 -0.024 -8.216 25.186 hybrid contribution -0.941 1.896 0.992 2.338 sum -24.750 1.872 -7.224 25.850 Atomic orbital electron populations 1.22775 0.91214 1.05584 1.05606 1.20969 0.93856 0.75824 0.83827 1.93044 1.90534 1.37482 1.96840 1.93043 1.90543 1.80869 1.53469 1.22851 0.97374 1.03456 0.97648 1.21235 0.91484 0.98966 0.89053 1.45781 1.07356 1.60101 1.25406 1.18424 0.81627 0.78959 0.85754 1.90793 1.55192 1.48069 1.46600 1.19830 0.94886 1.04997 0.96208 1.21114 0.97990 0.97563 0.94289 1.21055 0.95846 1.01350 0.97819 1.21969 0.92294 0.95601 0.97736 1.22863 1.03474 0.99625 0.95714 1.83612 0.92531 1.27021 1.76845 1.22832 0.95633 1.04537 1.43710 0.90616 1.25007 0.94958 0.98041 0.95583 1.69984 0.99847 1.36045 1.44645 0.86115 0.77917 0.81899 0.79368 1.20167 1.20633 1.19552 1.21968 0.93567 0.92667 0.95790 0.89100 0.89801 0.89104 0.87917 0.87913 0.90494 0.90486 0.76525 0.86566 0.85832 0.85032 0.92039 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.76 9.38 37.15 0.35 -0.41 16 2 C 0.29 2.09 2.11 -26.73 -0.06 2.03 16 3 F -0.20 -1.92 16.54 2.25 0.04 -1.88 16 4 F -0.20 -1.89 16.54 2.25 0.04 -1.85 16 5 C -0.18 -1.04 4.92 -26.73 -0.13 -1.17 16 6 C 0.12 1.19 5.43 -4.04 -0.02 1.17 16 7 N -0.73 -8.13 5.51 -61.24 -0.34 -8.47 16 8 C 0.56 9.12 7.77 -12.32 -0.10 9.03 16 9 O -0.53 -10.76 16.34 5.32 0.09 -10.67 16 10 C -0.15 -2.58 5.87 -105.00 -0.62 -3.19 16 11 C -0.09 -1.19 9.54 -39.12 -0.37 -1.57 16 12 C -0.14 -1.95 10.02 -39.67 -0.40 -2.35 16 13 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 14 C -0.11 -2.26 5.45 -39.00 -0.21 -2.47 16 15 S -0.03 -0.90 21.40 -107.50 -2.30 -3.20 16 16 C -0.52 -14.70 9.46 30.92 0.29 -14.41 16 17 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 18 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 19 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 25 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.91 7.80 -51.93 -0.41 0.51 16 31 H 0.08 0.90 7.80 -51.93 -0.41 0.49 16 32 H 0.40 3.06 6.50 -40.82 -0.27 2.80 16 33 H 0.12 1.01 6.40 -52.49 -0.34 0.68 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -34.34 344.10 -8.01 -42.34 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.32 Total: 0.27 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.11 Total: -13.46 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.40 Total: -33.26 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.07 Total: -3.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.34 -8.01 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452214608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.706 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds