Wall clock time and date at job start Tue Mar 31 2020 10:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39898 * 109.47343 * 2 1 4 4 F 1.39904 * 109.47063 * 240.00406 * 2 1 3 5 5 C 1.53001 * 109.47419 * 120.00235 * 2 1 3 6 6 C 1.53004 * 109.47164 * 179.97438 * 5 2 1 7 7 N 1.46492 * 109.47018 * 180.02562 * 6 5 2 8 8 C 1.34784 * 120.00217 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 6 10 10 C 1.47860 * 119.99972 * 179.97438 * 8 7 6 11 11 C 1.39661 * 120.10534 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.04191 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67598 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46950 * 90.00202 * 20 18 16 22 22 H 1.48495 * 109.46650 * 209.99961 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99842 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.09004 * 109.47184 * 299.99864 * 1 2 3 26 26 H 1.09003 * 109.47548 * 59.99275 * 1 2 3 27 27 H 1.08998 * 109.47535 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46773 * 60.00358 * 5 2 1 29 29 H 1.08994 * 109.47379 * 299.99988 * 5 2 1 30 30 H 1.09005 * 109.46655 * 60.00207 * 6 5 2 31 31 H 1.09002 * 109.47164 * 300.00138 * 6 5 2 32 32 H 0.96996 * 120.00373 * 359.97438 * 7 6 5 33 33 H 1.08002 * 119.98248 * 0.02562 * 11 10 8 34 34 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.89818 * 180.31471 * 13 12 11 36 36 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7218 1.2488 7 7 4.0584 -1.4130 2.4446 8 6 5.3835 -1.5362 2.6578 9 8 6.1733 -1.0743 1.8577 10 6 5.8764 -2.2333 3.8650 11 6 4.9707 -2.7644 4.7861 12 6 5.4323 -3.4146 5.9130 13 6 6.7900 -3.5489 6.1318 14 6 7.7015 -3.0185 5.2236 15 16 9.4317 -3.1855 5.5115 16 6 9.7585 -1.6498 6.3111 17 1 8.9446 -0.9815 6.5502 18 6 11.0615 -1.2991 6.6335 19 7 12.0535 -2.1138 6.3426 20 14 11.4079 0.3288 7.4819 21 1 11.3578 0.1402 8.9540 22 1 12.7557 0.8139 7.0905 23 1 10.3855 1.3262 7.0755 24 6 7.2464 -2.3624 4.0873 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 -1.7490 1.2491 29 1 1.6767 -0.2076 2.1392 30 1 3.9337 0.3058 1.2486 31 1 3.9330 -1.2359 0.3588 32 1 3.4281 -1.7813 3.0833 33 1 3.9086 -2.6665 4.6166 34 1 4.7297 -3.8239 6.6237 35 1 7.1451 -4.0630 7.0128 36 1 12.9645 -1.8684 6.5678 37 1 7.9513 -1.9534 3.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452214608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:10 Heat of formation + Delta-G solvation = -149.892802 kcal Electronic energy + Delta-G solvation = -22561.659576 eV Core-core repulsion = 18678.241742 eV Total energy + Delta-G solvation = -3883.417835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97006 -47.97253 -41.26178 -39.22505 -36.80357 -34.66545 -34.07352 -32.33541 -31.91177 -30.14112 -27.75625 -25.74557 -24.17505 -23.42813 -22.58058 -21.67105 -20.04323 -19.06840 -18.63393 -17.86594 -17.30555 -16.95376 -16.94552 -16.75644 -16.67655 -16.46331 -15.60935 -15.35511 -15.18572 -14.72133 -14.63496 -14.57622 -14.31980 -14.14613 -13.83162 -13.33942 -13.27261 -13.12841 -13.09207 -12.97265 -12.88289 -12.66128 -12.59298 -12.40698 -11.93131 -11.75820 -11.27367 -11.15692 -10.76623 -10.36774 -9.91735 -9.70352 -8.81770 -8.40356 -6.20499 -0.19609 0.25300 1.28525 1.36654 1.45180 1.63241 1.75881 1.91488 2.23412 2.79385 2.88684 2.92662 3.20649 3.35719 3.40768 3.46933 3.66560 3.93745 3.99971 4.05742 4.06219 4.35346 4.41472 4.48459 4.64350 4.64738 4.68275 4.86645 4.92309 4.93768 5.07650 5.20139 5.22219 5.32321 5.37397 5.50909 5.86595 6.14535 6.41000 6.99914 7.08762 8.66742 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002556 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.697213 B =10951.049998 C =11573.582357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.276 3.724 3 F -0.218 7.218 4 F -0.218 7.218 5 C -0.162 4.162 6 C 0.113 3.887 7 N -0.702 5.702 8 C 0.560 3.440 9 O -0.585 6.585 10 C -0.158 4.158 11 C -0.060 4.060 12 C -0.119 4.119 13 C -0.062 4.062 14 C -0.129 4.129 15 S -0.098 6.098 16 C -0.535 4.535 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.906 5.906 20 Si 0.993 3.007 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.269 1.269 24 C -0.047 4.047 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.422 0.578 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.230 0.574 -5.666 30.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.240 3.760 3 F -0.200 7.200 4 F -0.199 7.199 5 C -0.200 4.200 6 C -0.011 4.011 7 N -0.356 5.356 8 C 0.348 3.652 9 O -0.466 6.466 10 C -0.163 4.163 11 C -0.078 4.078 12 C -0.139 4.139 13 C -0.083 4.083 14 C -0.241 4.241 15 S 0.137 5.863 16 C -0.683 4.683 17 H 0.085 0.915 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.814 3.186 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.194 1.194 24 C -0.069 4.069 25 H 0.128 0.872 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.261 0.739 33 H 0.197 0.803 34 H 0.196 0.804 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -28.705 0.016 -6.521 29.436 hybrid contribution 0.370 1.825 0.393 1.903 sum -28.334 1.841 -6.129 29.048 Atomic orbital electron populations 1.22797 0.88156 1.07157 1.06379 1.21606 0.96011 0.74829 0.83581 1.93006 1.91006 1.39073 1.96897 1.93006 1.91002 1.81158 1.54732 1.22876 0.93372 1.05609 0.98134 1.21283 0.94845 0.97209 0.87781 1.45498 1.05729 1.58557 1.25799 1.18478 0.82962 0.78593 0.85116 1.90775 1.57027 1.50463 1.48311 1.19917 0.93678 1.05275 0.97395 1.21751 1.00289 0.93829 0.91942 1.21587 0.94454 0.99373 0.98445 1.22098 0.93840 0.95331 0.97050 1.22490 1.00409 1.03284 0.97880 1.83489 0.98664 1.26944 1.77203 1.23056 0.95906 1.05152 1.44150 0.91462 1.26026 0.94582 1.01902 0.96163 1.70109 1.00308 1.38046 1.45792 0.85036 0.77839 0.76915 0.78766 1.18510 1.19767 1.19381 1.21629 0.95264 0.94522 0.95497 0.87205 0.90242 0.87103 0.84878 0.85065 0.92697 0.92423 0.73869 0.80282 0.80360 0.84665 0.91692 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.82 9.38 71.98 0.68 -0.15 16 2 C 0.28 3.35 2.11 30.59 0.06 3.41 16 3 F -0.22 -4.05 16.54 44.97 0.74 -3.31 16 4 F -0.22 -3.96 16.54 44.97 0.74 -3.22 16 5 C -0.16 -1.30 4.92 30.60 0.15 -1.15 16 6 C 0.11 2.12 5.43 86.38 0.47 2.59 16 7 N -0.70 -13.42 5.51 -465.95 -2.57 -15.99 16 8 C 0.56 17.75 7.77 86.79 0.67 18.43 16 9 O -0.58 -24.95 16.34 -3.88 -0.06 -25.01 16 10 C -0.16 -5.06 5.87 -20.11 -0.12 -5.18 16 11 C -0.06 -1.26 9.54 22.57 0.22 -1.04 16 12 C -0.12 -2.69 10.02 22.21 0.22 -2.47 16 13 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 14 C -0.13 -5.73 5.45 22.65 0.12 -5.60 16 15 S -0.10 -5.40 21.40 -56.49 -1.21 -6.61 16 16 C -0.54 -31.76 9.46 67.94 0.64 -31.12 16 17 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 18 C 0.02 1.07 5.49 84.84 0.47 1.54 16 19 N -0.91 -55.26 13.22 21.64 0.29 -54.97 16 20 Si 0.99 45.11 29.55 68.60 2.03 47.13 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C -0.05 -2.03 9.34 22.70 0.21 -1.81 16 25 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 1.30 7.80 -2.38 -0.02 1.28 16 31 H 0.06 1.33 7.80 -2.39 -0.02 1.32 16 32 H 0.42 3.96 6.50 -92.71 -0.60 3.36 16 33 H 0.18 1.55 6.40 -2.91 -0.02 1.53 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.10 4.92 7.65 -2.91 -0.02 4.89 16 Total: -1.00 -85.05 344.10 4.48 -80.56 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.50 Total: 5.85 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.02 Total: -24.44 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.28 Total: -70.96 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 1.49 Total: -6.53 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -1.21 Total: -6.61 kcal Total: -85.05 4.48 -80.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452214608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.329 kcal (2) G-P(sol) polarization free energy of solvation -85.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds