Wall clock time and date at job start Tue Mar 31 2020 10:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 H 1.09004 * 109.47005 * 305.00326 * 3 2 1 5 5 N 1.46498 * 109.47297 * 64.99780 * 3 2 1 6 6 C 1.34774 * 120.00348 * 205.00539 * 5 3 2 7 7 O 1.21549 * 119.99904 * 359.97438 * 6 5 3 8 8 C 1.47867 * 120.00079 * 180.02562 * 6 5 3 9 9 C 1.39669 * 120.09925 * 0.02562 * 8 6 5 10 10 C 1.38043 * 120.03800 * 179.97438 * 9 8 6 11 11 C 1.38176 * 120.24168 * 359.75416 * 10 9 8 12 12 C 1.39179 * 120.20357 * 0.50266 * 11 10 9 13 13 S 1.76194 * 120.02163 * 179.76778 * 12 11 10 14 14 C 1.76196 * 100.00182 * 265.25136 * 13 12 11 15 15 H 1.08000 * 120.00393 * 5.12593 * 14 13 12 16 16 C 1.38736 * 120.00006 * 185.12109 * 14 13 12 17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99686 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47166 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46857 * 120.00071 * 18 16 14 21 21 H 1.48498 * 109.46876 * 239.99864 * 18 16 14 22 22 C 1.38875 * 119.95687 * 359.49916 * 12 11 10 23 23 C 1.52997 * 109.47330 * 184.99976 * 3 2 1 24 24 F 1.39904 * 109.47279 * 179.97438 * 23 3 2 25 25 F 1.39898 * 109.47348 * 299.99861 * 23 3 2 26 26 H 1.09008 * 109.46816 * 300.00325 * 1 2 3 27 27 H 1.08999 * 109.46862 * 59.99688 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47338 * 239.99612 * 2 1 3 30 30 H 1.09004 * 109.47279 * 120.00181 * 2 1 3 31 31 H 0.97008 * 119.99747 * 25.00340 * 5 3 2 32 32 H 1.08002 * 119.98588 * 359.96545 * 9 8 6 33 33 H 1.08000 * 119.87868 * 180.02562 * 10 9 8 34 34 H 1.08005 * 119.89464 * 180.25271 * 11 10 9 35 35 H 0.97004 * 119.99833 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.12436 * 180.27334 * 22 12 11 37 37 H 1.09000 * 109.47173 * 60.00269 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6526 2.0975 1.2518 6 6 1.5258 3.4384 1.2995 7 8 1.7334 4.1043 0.3041 8 6 1.1352 4.0996 2.5631 9 6 0.8977 3.3365 3.7086 10 6 0.5336 3.9551 4.8877 11 6 0.4074 5.3300 4.9422 12 6 0.6365 6.0997 3.8055 13 16 0.4683 7.8521 3.8788 14 6 -1.1939 8.0236 3.3202 15 1 -1.7952 7.1455 3.1364 16 6 -1.7305 9.2867 3.1166 17 7 -0.9979 10.3569 3.3412 18 14 -3.4931 9.4685 2.5251 19 1 -4.0973 8.1235 2.3491 20 1 -4.2750 10.2357 3.5277 21 1 -3.5077 10.1909 1.2277 22 6 1.0032 5.4862 2.6148 23 6 3.5649 1.4442 -0.1257 24 9 4.0313 2.7632 -0.1263 25 9 4.1227 0.7523 0.9547 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4872 1.5661 2.0463 32 1 0.9987 2.2619 3.6719 33 1 0.3510 3.3626 5.7721 34 1 0.1263 5.8085 5.8688 35 1 -1.3730 11.2400 3.1985 36 1 1.1859 6.0812 1.7323 37 1 3.8532 0.9569 -1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452243888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:25 Heat of formation + Delta-G solvation = -127.630569 kcal Electronic energy + Delta-G solvation = -23497.808630 eV Core-core repulsion = 19615.356159 eV Total energy + Delta-G solvation = -3882.452472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.03631 -47.02901 -40.06686 -38.00872 -36.36118 -32.83283 -32.50477 -30.81831 -30.50027 -28.91352 -25.56898 -24.38157 -23.51373 -22.36157 -21.35162 -20.54831 -18.37711 -17.85678 -17.44014 -17.12525 -16.98799 -16.10567 -15.63893 -15.11309 -14.85014 -14.72491 -14.45192 -14.03820 -13.89946 -13.77639 -13.44105 -13.39420 -13.33840 -12.96140 -12.88082 -12.34844 -12.23128 -11.77777 -11.65153 -11.42166 -11.36319 -11.14611 -11.12243 -11.10003 -10.70292 -9.98064 -9.80167 -9.30546 -9.16705 -9.01840 -8.59797 -8.02355 -6.70673 -6.28344 -4.02160 1.15149 1.66715 2.86005 2.99312 3.19274 3.21961 3.28796 3.46768 3.56765 3.93310 4.04746 4.12039 4.27045 4.47660 4.63763 4.73255 4.86775 4.96492 5.06780 5.08621 5.16326 5.23698 5.31637 5.47660 5.48146 5.59781 5.73642 5.83552 5.87153 5.97364 6.17082 6.25286 6.57541 6.63257 6.92815 7.18260 7.37547 7.58005 8.22166 8.33170 9.17540 10.78456 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.003278 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.655660 B = 8540.080351 C = 8761.741680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.099 3.901 4 H 0.118 0.882 5 N -0.726 5.726 6 C 0.566 3.434 7 O -0.520 6.520 8 C -0.153 4.153 9 C -0.089 4.089 10 C -0.141 4.141 11 C -0.055 4.055 12 C -0.107 4.107 13 S -0.035 6.035 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.017 4.017 23 C 0.246 3.754 24 F -0.190 7.190 25 F -0.206 7.206 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.269 0.731 36 H 0.139 0.861 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -23.038 -4.083 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.008 4.008 4 H 0.136 0.864 5 N -0.380 5.380 6 C 0.355 3.645 7 O -0.396 6.396 8 C -0.158 4.158 9 C -0.109 4.109 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.217 4.217 13 S 0.200 5.800 14 C -0.667 4.667 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.505 5.505 18 Si 0.747 3.253 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.039 4.039 23 C 0.191 3.809 24 F -0.171 7.171 25 F -0.187 7.187 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.862 -21.445 -4.467 22.676 hybrid contribution -1.846 -1.096 -0.282 2.165 sum 4.016 -22.541 -4.749 23.383 Atomic orbital electron populations 1.21746 0.94038 1.02203 1.02937 1.21767 0.97765 0.93301 1.03987 1.22134 0.91725 0.96073 0.90862 0.86435 1.45816 1.72261 1.07312 1.12609 1.18458 0.76103 0.81354 0.88624 1.90792 1.48905 1.63771 1.36087 1.19795 1.08231 0.94750 0.93054 1.21123 0.98610 0.98489 0.92634 1.21053 1.02412 0.94988 0.97599 1.21965 0.94013 0.93048 0.98538 1.22853 1.00840 1.03695 0.94331 1.83624 1.19796 0.90180 1.86407 1.22882 0.96085 0.95339 1.52385 0.90576 1.25003 0.99037 0.94756 0.94771 1.69995 1.36488 0.98106 1.45915 0.86069 0.82307 0.78443 0.78496 1.19519 1.20468 1.20429 1.21951 0.91532 0.92275 0.98142 1.22498 0.92733 0.76773 0.88927 1.93079 1.89899 1.37136 1.97022 1.92961 1.87177 1.79243 1.59333 0.92081 0.92160 0.91970 0.89737 0.90331 0.76026 0.86597 0.85831 0.85041 0.92101 0.84279 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.13 -0.74 5.29 -26.73 -0.14 -0.88 16 3 C 0.10 0.90 2.26 -67.93 -0.15 0.74 16 4 H 0.12 1.19 7.58 -51.93 -0.39 0.79 16 5 N -0.73 -8.18 4.40 -54.75 -0.24 -8.42 16 6 C 0.57 9.10 7.31 -12.32 -0.09 9.01 16 7 O -0.52 -10.17 14.91 5.32 0.08 -10.09 16 8 C -0.15 -2.61 5.87 -105.00 -0.62 -3.23 16 9 C -0.09 -1.24 9.54 -39.12 -0.37 -1.61 16 10 C -0.14 -2.03 10.02 -39.68 -0.40 -2.42 16 11 C -0.05 -0.98 9.79 -39.25 -0.38 -1.37 16 12 C -0.11 -2.30 5.45 -39.00 -0.21 -2.51 16 13 S -0.03 -0.90 21.40 -107.50 -2.30 -3.20 16 14 C -0.52 -14.73 9.46 30.92 0.29 -14.44 16 15 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 16 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 17 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 18 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 23 C 0.25 2.37 5.01 37.16 0.19 2.55 16 24 F -0.19 -2.76 15.70 2.25 0.04 -2.72 16 25 F -0.21 -2.16 16.83 2.25 0.04 -2.12 16 26 H 0.06 0.43 7.75 -51.92 -0.40 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 30 H 0.08 0.41 7.94 -51.93 -0.41 0.00 16 31 H 0.40 3.58 6.63 -40.82 -0.27 3.31 16 32 H 0.12 1.13 6.40 -52.49 -0.34 0.79 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.14 3.11 7.65 -52.49 -0.40 2.71 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -34.09 340.71 -7.83 -41.92 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.30 Total: 1.31 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.99 Total: -13.47 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.49 Total: -33.23 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.09 -7.83 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452243888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.715 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds