Wall clock time and date at job start Tue Mar 31 2020 10:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 H 1.09004 * 109.47005 * 305.00326 * 3 2 1 5 5 N 1.46498 * 109.47297 * 64.99780 * 3 2 1 6 6 C 1.34774 * 120.00348 * 205.00539 * 5 3 2 7 7 O 1.21549 * 119.99904 * 359.97438 * 6 5 3 8 8 C 1.47867 * 120.00079 * 180.02562 * 6 5 3 9 9 C 1.39669 * 120.09925 * 0.02562 * 8 6 5 10 10 C 1.38043 * 120.03800 * 179.97438 * 9 8 6 11 11 C 1.38176 * 120.24168 * 359.75416 * 10 9 8 12 12 C 1.39179 * 120.20357 * 0.50266 * 11 10 9 13 13 S 1.76194 * 120.02163 * 179.76778 * 12 11 10 14 14 C 1.76196 * 100.00182 * 265.25136 * 13 12 11 15 15 H 1.08000 * 120.00393 * 5.12593 * 14 13 12 16 16 C 1.38736 * 120.00006 * 185.12109 * 14 13 12 17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99686 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47166 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46857 * 120.00071 * 18 16 14 21 21 H 1.48498 * 109.46876 * 239.99864 * 18 16 14 22 22 C 1.38875 * 119.95687 * 359.49916 * 12 11 10 23 23 C 1.52997 * 109.47330 * 184.99976 * 3 2 1 24 24 F 1.39904 * 109.47279 * 179.97438 * 23 3 2 25 25 F 1.39898 * 109.47348 * 299.99861 * 23 3 2 26 26 H 1.09008 * 109.46816 * 300.00325 * 1 2 3 27 27 H 1.08999 * 109.46862 * 59.99688 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47338 * 239.99612 * 2 1 3 30 30 H 1.09004 * 109.47279 * 120.00181 * 2 1 3 31 31 H 0.97008 * 119.99747 * 25.00340 * 5 3 2 32 32 H 1.08002 * 119.98588 * 359.96545 * 9 8 6 33 33 H 1.08000 * 119.87868 * 180.02562 * 10 9 8 34 34 H 1.08005 * 119.89464 * 180.25271 * 11 10 9 35 35 H 0.97004 * 119.99833 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.12436 * 180.27334 * 22 12 11 37 37 H 1.09000 * 109.47173 * 60.00269 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6526 2.0975 1.2518 6 6 1.5258 3.4384 1.2995 7 8 1.7334 4.1043 0.3041 8 6 1.1352 4.0996 2.5631 9 6 0.8977 3.3365 3.7086 10 6 0.5336 3.9551 4.8877 11 6 0.4074 5.3300 4.9422 12 6 0.6365 6.0997 3.8055 13 16 0.4683 7.8521 3.8788 14 6 -1.1939 8.0236 3.3202 15 1 -1.7952 7.1455 3.1364 16 6 -1.7305 9.2867 3.1166 17 7 -0.9979 10.3569 3.3412 18 14 -3.4931 9.4685 2.5251 19 1 -4.0973 8.1235 2.3491 20 1 -4.2750 10.2357 3.5277 21 1 -3.5077 10.1909 1.2277 22 6 1.0032 5.4862 2.6148 23 6 3.5649 1.4442 -0.1257 24 9 4.0313 2.7632 -0.1263 25 9 4.1227 0.7523 0.9547 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4872 1.5661 2.0463 32 1 0.9987 2.2619 3.6719 33 1 0.3510 3.3626 5.7721 34 1 0.1263 5.8085 5.8688 35 1 -1.3730 11.2400 3.1985 36 1 1.1859 6.0812 1.7323 37 1 3.8532 0.9569 -1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452243888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:24 Heat of formation + Delta-G solvation = -149.540517 kcal Electronic energy + Delta-G solvation = -23498.758717 eV Core-core repulsion = 19615.356159 eV Total energy + Delta-G solvation = -3883.402558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.87833 -47.90603 -41.29286 -39.29440 -37.29697 -34.66588 -33.80833 -32.05850 -31.80292 -29.69338 -27.75871 -25.43289 -24.35963 -23.68625 -22.17933 -21.74527 -20.04042 -19.03213 -18.66093 -18.01419 -17.88115 -17.24950 -16.94834 -16.80374 -16.53607 -15.78850 -15.74859 -15.30718 -14.84898 -14.78800 -14.68430 -14.60101 -14.26746 -14.08998 -13.86568 -13.53900 -13.27961 -13.07588 -12.98873 -12.94884 -12.67168 -12.40676 -12.33467 -12.07934 -11.89327 -11.74436 -11.27253 -11.14489 -10.76941 -10.33278 -9.94199 -9.71803 -8.82030 -8.40349 -6.20721 -0.20693 0.23686 1.28624 1.35823 1.45773 1.62396 1.76209 1.91661 2.23218 2.73914 2.89074 2.92794 3.29777 3.39400 3.41631 3.62285 3.84302 3.92248 3.99197 4.09778 4.20471 4.33563 4.41933 4.47837 4.56529 4.66300 4.82750 4.90331 5.03806 5.10376 5.19338 5.28710 5.30764 5.37388 5.39787 5.48632 5.84113 6.14833 6.35852 6.99942 7.07034 8.67117 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.003278 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.655660 B = 8540.080351 C = 8761.741680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.094 3.906 4 H 0.104 0.896 5 N -0.705 5.705 6 C 0.563 3.437 7 O -0.566 6.566 8 C -0.158 4.158 9 C -0.064 4.064 10 C -0.120 4.120 11 C -0.063 4.063 12 C -0.129 4.129 13 S -0.097 6.097 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.020 3.980 17 N -0.906 5.906 18 Si 0.994 3.006 19 H -0.266 1.266 20 H -0.265 1.265 21 H -0.272 1.272 22 C -0.045 4.045 23 C 0.236 3.764 24 F -0.223 7.223 25 F -0.209 7.209 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.418 0.582 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.136 0.864 35 H 0.274 0.726 36 H 0.101 0.899 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -27.482 -3.575 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.012 4.012 4 H 0.122 0.878 5 N -0.359 5.359 6 C 0.352 3.648 7 O -0.445 6.445 8 C -0.163 4.163 9 C -0.082 4.082 10 C -0.139 4.139 11 C -0.084 4.084 12 C -0.240 4.240 13 S 0.138 5.862 14 C -0.683 4.683 15 H 0.086 0.914 16 C -0.185 4.185 17 N -0.543 5.543 18 Si 0.815 3.185 19 H -0.190 1.190 20 H -0.189 1.189 21 H -0.197 1.197 22 C -0.067 4.067 23 C 0.181 3.819 24 F -0.205 7.205 25 F -0.190 7.190 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.257 0.743 32 H 0.190 0.810 33 H 0.194 0.806 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.999 -25.945 -3.935 26.713 hybrid contribution -1.485 0.073 -0.430 1.548 sum 3.514 -25.872 -4.365 26.472 Atomic orbital electron populations 1.21770 0.94415 1.02982 1.01959 1.21787 0.97220 0.90640 1.06004 1.22407 0.91653 0.97931 0.89161 0.87758 1.45657 1.70414 1.05593 1.14253 1.18399 0.75970 0.82818 0.87631 1.90774 1.51122 1.65167 1.37420 1.19959 1.07888 0.93367 0.95094 1.21704 0.94951 1.00893 0.90674 1.21558 0.99580 0.93280 0.99522 1.22084 0.94141 0.94882 0.97248 1.22502 1.04593 1.00496 0.96414 1.83504 1.19739 0.96316 1.86624 1.23098 0.97022 0.95494 1.52712 0.91445 1.26021 1.03750 0.94183 0.94595 1.70117 1.38616 0.98697 1.46837 0.84982 0.76575 0.78646 0.78274 1.18973 1.18945 1.19747 1.21621 0.94159 0.94179 0.96727 1.23052 0.92722 0.75490 0.90600 1.93021 1.90342 1.39902 1.97215 1.92949 1.87242 1.79021 1.59816 0.93100 0.93196 0.90293 0.87014 0.88976 0.74292 0.81048 0.80591 0.84618 0.91675 0.88045 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.80 71.98 0.71 -0.68 16 2 C -0.12 -0.86 5.29 30.59 0.16 -0.70 16 3 C 0.09 1.49 2.26 44.99 0.10 1.59 16 4 H 0.10 2.00 7.58 -2.38 -0.02 1.98 16 5 N -0.71 -14.21 4.40 -445.40 -1.96 -16.16 16 6 C 0.56 17.95 7.31 86.79 0.63 18.58 16 7 O -0.57 -23.11 14.91 -3.87 -0.06 -23.17 16 8 C -0.16 -5.30 5.87 -20.11 -0.12 -5.41 16 9 C -0.06 -1.50 9.54 22.57 0.22 -1.29 16 10 C -0.12 -2.96 10.02 22.21 0.22 -2.74 16 11 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 12 C -0.13 -5.82 5.45 22.65 0.12 -5.70 16 13 S -0.10 -5.38 21.40 -56.49 -1.21 -6.59 16 14 C -0.54 -31.91 9.46 67.94 0.64 -31.27 16 15 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 16 C 0.02 1.14 5.49 84.84 0.47 1.61 16 17 N -0.91 -55.27 13.22 21.64 0.29 -54.98 16 18 Si 0.99 45.01 29.55 68.60 2.03 47.04 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C -0.04 -1.97 9.34 22.70 0.21 -1.75 16 23 C 0.24 3.98 5.01 71.98 0.36 4.34 16 24 F -0.22 -6.42 15.70 44.97 0.71 -5.72 16 25 F -0.21 -3.75 16.83 44.97 0.76 -2.99 16 26 H 0.05 0.56 7.75 -2.38 -0.02 0.54 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.09 0.49 7.94 -2.38 -0.02 0.47 16 31 H 0.42 5.60 6.63 -92.70 -0.61 4.99 16 32 H 0.17 2.16 6.40 -2.91 -0.02 2.14 16 33 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 36 H 0.10 5.08 7.65 -2.91 -0.02 5.05 16 37 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -82.36 340.71 4.99 -77.37 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.49 Total: 10.61 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.95 Total: -25.41 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -1.67 Total: -71.15 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 1.46 Total: -8.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.21 Total: -6.59 kcal Total: -82.36 4.99 -77.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452243888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.166 kcal (2) G-P(sol) polarization free energy of solvation -82.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds