Wall clock time and date at job start Tue Mar 31 2020 11:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47363 * 2 1 4 4 N 1.46498 * 109.47090 * 240.00454 * 2 1 3 5 5 C 1.34774 * 120.00348 * 85.00196 * 4 2 1 6 6 O 1.21549 * 119.99904 * 359.97438 * 5 4 2 7 7 C 1.47867 * 120.00079 * 180.02562 * 5 4 2 8 8 C 1.39669 * 120.09925 * 0.02562 * 7 5 4 9 9 C 1.38043 * 120.03800 * 179.97438 * 8 7 5 10 10 C 1.38176 * 120.24168 * 359.75416 * 9 8 7 11 11 C 1.39179 * 120.20357 * 0.50266 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.76778 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31631 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00147 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46962 * 89.99772 * 17 15 13 19 19 H 1.48502 * 109.47274 * 210.00042 * 17 15 13 20 20 H 1.48499 * 109.47299 * 330.00031 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.49916 * 11 10 9 22 22 C 1.52998 * 109.47330 * 120.00131 * 2 1 3 23 23 C 1.52997 * 109.47330 * 179.97438 * 22 2 1 24 24 F 1.39903 * 109.46879 * 300.00130 * 22 2 1 25 25 F 1.39903 * 109.47115 * 59.99635 * 22 2 1 26 26 H 1.09000 * 109.47122 * 59.99756 * 1 2 3 27 27 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47173 * 300.00138 * 1 2 3 29 29 H 0.97008 * 119.99747 * 264.99997 * 4 2 1 30 30 H 1.08002 * 119.98588 * 359.96545 * 8 7 5 31 31 H 1.08000 * 119.87868 * 180.02562 * 9 8 7 32 32 H 1.08005 * 119.89464 * 180.25271 * 10 9 8 33 33 H 0.96995 * 120.00040 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.12339 * 180.23002 * 21 11 10 35 35 H 1.08993 * 109.47008 * 60.00198 * 23 22 2 36 36 H 1.09000 * 109.47122 * 180.02562 * 23 22 2 37 37 H 1.09000 * 109.47173 * 299.99731 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6394 -0.7153 -3.5646 8 6 2.9711 -2.0707 -3.5046 9 6 3.4301 -2.7204 -4.6327 10 6 3.5588 -2.0359 -5.8261 11 6 3.2362 -0.6838 -5.8961 12 16 3.4078 0.1858 -7.4188 13 6 5.0184 0.8669 -7.2024 14 1 5.6035 0.6042 -6.3335 15 6 5.5349 1.7405 -8.1483 16 7 6.7383 2.2489 -7.9868 17 14 4.5228 2.1953 -9.6509 18 1 3.7040 3.3973 -9.3508 19 1 5.4305 2.4863 -10.7896 20 1 3.6292 1.0639 -10.0068 21 6 2.7736 -0.0219 -4.7662 22 6 2.0400 -0.7213 1.2492 23 6 3.5700 -0.7218 1.2489 24 9 1.5736 -0.0618 2.3915 25 9 1.5736 -2.0403 1.2492 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2490 -1.6317 -1.1527 30 1 2.8686 -2.6108 -2.5749 31 1 3.6855 -3.7686 -4.5835 32 1 3.9146 -2.5508 -6.7063 33 1 7.0994 2.8599 -8.6479 34 1 2.5190 1.0263 -4.8184 35 1 3.9337 0.3057 1.2487 36 1 3.9333 -1.2361 2.1386 37 1 3.9330 -1.2359 0.3589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452463348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:52 Heat of formation + Delta-G solvation = -140.897863 kcal Electronic energy + Delta-G solvation = -23350.369529 eV Core-core repulsion = 19467.341744 eV Total energy + Delta-G solvation = -3883.027785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.12349 -48.10236 -41.39814 -39.35463 -37.05694 -34.71677 -33.41763 -32.03548 -31.77187 -30.93372 -27.91937 -25.80334 -24.74490 -23.76685 -22.35224 -21.77045 -20.22758 -19.32077 -18.74453 -17.85434 -17.33827 -17.31670 -17.14340 -16.72383 -16.25383 -16.17875 -15.75197 -15.27161 -14.98563 -14.79721 -14.71591 -14.53545 -14.43341 -14.04750 -13.94838 -13.63629 -13.53073 -13.44923 -13.16272 -13.08041 -13.07442 -12.72264 -12.67256 -12.29641 -11.88467 -11.85266 -11.29391 -11.21769 -10.94788 -10.48677 -9.97583 -9.76493 -9.14666 -8.53997 -6.28121 -0.24593 0.19748 1.06254 1.31400 1.43853 1.61189 1.66358 1.78710 2.21477 2.52766 2.59942 2.84370 2.95334 2.99506 3.23501 3.44787 3.56249 3.90320 3.98658 4.04482 4.09076 4.30435 4.41699 4.49416 4.55509 4.60224 4.61358 4.76089 4.88818 4.96620 5.07901 5.13664 5.16591 5.29086 5.43024 5.68712 5.80744 6.10137 6.26327 6.88684 6.97924 8.59507 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.002974 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.840781 B = 9412.670753 C = 9714.725008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 H 0.108 0.892 4 N -0.702 5.702 5 C 0.573 3.427 6 O -0.570 6.570 7 C -0.157 4.157 8 C -0.059 4.059 9 C -0.121 4.121 10 C -0.057 4.057 11 C -0.119 4.119 12 S -0.116 6.116 13 C -0.524 4.524 14 H 0.047 0.953 15 C 0.042 3.958 16 N -0.919 5.919 17 Si 0.921 3.079 18 H -0.263 1.263 19 H -0.258 1.258 20 H -0.226 1.226 21 C -0.040 4.040 22 C 0.289 3.711 23 C -0.197 4.197 24 F -0.197 7.197 25 F -0.197 7.197 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.418 0.582 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.140 0.860 33 H 0.278 0.722 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -12.948 18.162 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 H 0.126 0.874 4 N -0.357 5.357 5 C 0.362 3.638 6 O -0.449 6.449 7 C -0.162 4.162 8 C -0.077 4.077 9 C -0.140 4.140 10 C -0.078 4.078 11 C -0.230 4.230 12 S 0.118 5.882 13 C -0.671 4.671 14 H 0.065 0.935 15 C -0.163 4.163 16 N -0.557 5.557 17 Si 0.741 3.259 18 H -0.187 1.187 19 H -0.182 1.182 20 H -0.150 1.150 21 C -0.062 4.062 22 C 0.253 3.747 23 C -0.255 4.255 24 F -0.178 7.178 25 F -0.178 7.178 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.258 0.742 30 H 0.191 0.809 31 H 0.195 0.805 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.691 -11.888 17.173 23.463 hybrid contribution 0.954 0.449 0.433 1.140 sum -9.737 -11.439 17.606 23.144 Atomic orbital electron populations 1.22172 0.92903 1.03890 1.03606 1.21857 0.96815 0.98376 0.83050 0.87403 1.45508 1.67587 1.14692 1.07898 1.18269 0.76397 0.85777 0.83377 1.90782 1.51371 1.17419 1.85354 1.19842 1.07610 0.96058 0.92729 1.21754 0.94132 0.91449 1.00365 1.21567 0.99465 1.02047 0.90941 1.22104 0.93545 0.92201 0.99906 1.22070 1.05126 0.97858 0.97958 1.82657 1.22631 1.64179 1.18763 1.22379 1.00120 1.32703 1.11876 0.93464 1.25710 0.95871 0.93850 1.00912 1.70029 1.17458 1.30922 1.37257 0.85787 0.79798 0.81307 0.78971 1.18736 1.18222 1.14973 1.21650 0.93699 0.99296 0.91559 1.21229 0.95187 0.75302 0.83021 1.22856 0.89234 1.06637 1.06743 1.93025 1.90783 1.81140 1.52845 1.93017 1.90700 1.37373 1.96716 0.92250 0.90531 0.89771 0.74245 0.80917 0.80518 0.84220 0.91273 0.87332 0.88768 0.88229 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.24 71.98 0.67 -2.28 16 2 C 0.10 1.87 2.24 44.99 0.10 1.97 16 3 H 0.11 2.23 7.58 -2.38 -0.02 2.21 16 4 N -0.70 -12.90 4.32 -445.40 -1.92 -14.82 16 5 C 0.57 16.27 7.74 86.79 0.67 16.94 16 6 O -0.57 -21.26 16.01 -3.87 -0.06 -21.33 16 7 C -0.16 -4.68 5.87 -20.11 -0.12 -4.80 16 8 C -0.06 -1.20 9.54 22.57 0.22 -0.98 16 9 C -0.12 -2.63 10.02 22.21 0.22 -2.40 16 10 C -0.06 -1.81 9.79 22.48 0.22 -1.59 16 11 C -0.12 -4.89 5.45 22.65 0.12 -4.77 16 12 S -0.12 -5.69 19.38 -56.49 -1.09 -6.79 16 13 C -0.52 -31.07 10.01 67.94 0.68 -30.39 16 14 H 0.05 3.10 8.02 -2.91 -0.02 3.07 16 15 C 0.04 2.45 5.50 84.84 0.47 2.92 16 16 N -0.92 -56.60 13.97 21.64 0.30 -56.30 16 17 Si 0.92 43.68 27.74 68.60 1.90 45.58 16 18 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.23 -10.18 6.74 99.48 0.67 -9.51 16 21 C -0.04 -1.59 9.34 22.70 0.21 -1.38 16 22 C 0.29 4.20 1.78 30.59 0.05 4.25 16 23 C -0.20 -2.13 9.23 71.98 0.66 -1.47 16 24 F -0.20 -3.39 16.54 44.97 0.74 -2.65 16 25 F -0.20 -2.93 16.18 44.97 0.73 -2.20 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.19 7.80 -2.39 -0.02 1.17 16 28 H 0.08 1.31 7.80 -2.39 -0.02 1.29 16 29 H 0.42 4.98 6.12 -92.70 -0.57 4.41 16 30 H 0.17 1.69 6.40 -2.91 -0.02 1.67 16 31 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.11 4.88 7.65 -2.91 -0.02 4.86 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.91 7.44 -2.39 -0.02 0.90 16 Total: -1.00 -75.63 338.48 5.28 -70.35 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.50 Total: 12.13 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.18 Total: -23.98 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.62 Total: -71.12 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.47 Total: -4.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.90 Total: 45.58 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.09 Total: -6.79 kcal Total: -75.63 5.28 -70.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452463348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.548 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds