Wall clock time and date at job start Tue Mar 31 2020 10:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47346 * 2 1 4 4 C 1.50705 * 109.47349 * 239.99585 * 2 1 3 5 5 H 1.07994 * 119.99745 * 240.00445 * 4 2 1 6 6 C 1.37871 * 119.99517 * 60.00295 * 4 2 1 7 7 N 1.31517 * 120.00491 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99744 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47152 * 119.99688 * 8 6 4 11 11 H 1.48494 * 109.47204 * 239.99635 * 8 6 4 12 12 C 1.53005 * 109.47245 * 119.99999 * 2 1 3 13 13 N 1.46505 * 109.46784 * 299.99716 * 12 2 1 14 14 C 1.34777 * 120.00115 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.33405 * 125.19357 * 90.00182 * 18 17 16 20 20 C 1.38479 * 114.91077 * 180.02562 * 19 18 17 21 21 Cl 1.73602 * 122.54923 * 179.97438 * 20 19 18 22 22 C 1.33439 * 114.90127 * 0.02562 * 20 19 18 23 23 S 1.75877 * 125.19809 * 269.69862 * 18 17 16 24 24 H 1.09004 * 109.47108 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00183 * 1 2 3 26 26 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99746 * 3 2 1 29 29 H 1.08993 * 109.47662 * 59.99968 * 3 2 1 30 30 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47193 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47333 * 59.99272 * 12 2 1 33 33 H 0.97003 * 120.00244 * 359.97438 * 13 12 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 35 35 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 36 36 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 37 37 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 38 38 H 1.08001 * 122.54461 * 0.02562 * 19 18 17 39 39 H 1.07998 * 125.20406 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2872 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6696 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2189 4.9000 17 6 1.8842 -0.5022 6.1493 18 6 1.3819 0.2083 7.3797 19 6 0.2355 -0.0586 8.0076 20 6 -0.0170 0.7269 9.1197 21 17 -1.4502 0.5488 10.0831 22 6 0.9245 1.6319 9.3940 23 16 2.2211 1.5111 8.2116 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 0.7089 1.1611 -3.4845 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7488 1.2494 33 1 0.9943 0.7584 2.3564 34 1 0.2841 0.2189 4.8996 35 1 1.7374 1.2466 4.9003 36 1 2.9742 -0.5018 6.1494 37 1 1.5212 -1.5300 6.1492 38 1 -0.4440 -0.8289 7.6739 39 1 0.8975 2.3279 10.2193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:19 Heat of formation + Delta-G solvation = -32.223862 kcal Electronic energy + Delta-G solvation = -20925.514716 eV Core-core repulsion = 17598.996070 eV Total energy + Delta-G solvation = -3326.518646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48081 -38.53409 -36.62894 -36.33276 -33.66576 -33.30063 -30.93365 -29.13637 -26.14169 -25.75438 -25.35754 -24.34561 -22.61104 -20.03015 -19.66143 -18.80054 -17.81883 -16.81756 -16.15547 -15.77286 -15.51352 -15.16623 -14.65983 -14.09472 -14.04483 -13.61542 -13.39738 -13.09017 -12.96907 -12.67517 -12.37448 -12.34614 -12.19288 -11.50255 -11.46522 -11.39605 -11.27507 -11.22111 -10.92052 -10.89128 -10.68168 -10.41557 -10.22652 -9.66392 -9.63132 -9.30726 -9.01929 -8.80208 -8.70839 -8.48461 -8.34097 -6.04401 -4.14474 0.51289 0.98069 1.39705 2.15059 2.27906 3.00343 3.25635 3.34389 3.38717 3.68812 4.37427 4.45238 4.73433 4.84717 4.93145 5.02987 5.22522 5.27752 5.42085 5.53123 5.66105 5.77262 5.90316 5.99947 6.20891 6.30199 6.48126 6.75072 6.79590 6.90449 6.99036 7.00240 7.32727 7.53059 7.67432 7.98470 8.01798 8.12768 8.36098 8.65800 8.86651 9.51624 10.97040 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.002190 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.918472 B =12782.039578 C =13008.152532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.504 3.496 15 O -0.554 6.554 16 C -0.138 4.138 17 C -0.034 4.034 18 C -0.155 4.155 19 C -0.139 4.139 20 C -0.040 4.040 21 Cl -0.055 7.055 22 C -0.220 4.220 23 S 0.146 5.854 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 3.762 22.516 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.289 3.711 15 O -0.434 6.434 16 C -0.179 4.179 17 C -0.074 4.074 18 C -0.273 4.273 19 C -0.169 4.169 20 C -0.080 4.080 21 Cl -0.027 7.027 22 C -0.357 4.357 23 S 0.409 5.591 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.169 0.831 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.524 3.916 22.297 22.644 hybrid contribution -1.508 -0.680 -0.524 1.735 sum -2.032 3.236 21.773 22.106 Atomic orbital electron populations 1.21835 0.97761 0.99184 1.00111 1.18365 0.92799 0.92760 0.90620 1.21834 0.98582 0.98363 1.00109 1.21023 1.31392 1.12074 0.89882 0.92390 1.24885 0.94862 0.94933 0.98885 1.69812 1.36716 1.22808 1.23135 0.86518 0.78646 0.79761 0.82982 1.19758 1.21050 1.21059 1.21722 0.98125 0.95795 0.83476 1.46340 1.52501 1.31734 1.06091 1.20465 0.80838 0.84866 0.84923 1.90678 1.38794 1.26825 1.87054 1.21688 1.02963 1.00778 0.92429 1.19923 1.01745 0.98723 0.86985 1.24557 0.98539 1.01803 1.02411 1.19889 0.98518 1.02801 0.95672 1.19785 0.91493 1.00061 0.96615 1.98370 1.36900 1.97190 1.70212 1.25554 0.98475 1.05463 1.06173 1.84510 1.21039 1.33072 1.20439 0.97488 0.89575 0.95439 0.95444 0.89581 0.97487 0.93049 0.92734 0.92720 0.76651 0.88664 0.88925 0.89512 0.88687 0.83148 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.38 9.35 55.43 0.52 -22.87 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.70 16 13 N -0.72 -12.08 4.96 -60.29 -0.30 -12.37 16 14 C 0.50 7.98 7.83 -10.99 -0.09 7.89 16 15 O -0.55 -10.80 15.98 5.55 0.09 -10.71 16 16 C -0.14 -1.51 5.68 -27.89 -0.16 -1.67 16 17 C -0.03 -0.36 5.00 -27.88 -0.14 -0.50 16 18 C -0.16 -1.46 5.76 -36.00 -0.21 -1.66 16 19 C -0.14 -1.29 9.94 -41.18 -0.41 -1.70 16 20 C -0.04 -0.36 6.27 -41.17 -0.26 -0.62 16 21 Cl -0.06 -0.49 29.11 -51.86 -1.51 -1.99 16 22 C -0.22 -1.79 11.08 29.05 0.32 -1.47 16 23 S 0.15 1.21 23.33 -107.50 -2.51 -1.30 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.40 6.03 6.16 -40.82 -0.25 5.78 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -28.03 348.72 -9.63 -37.66 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.36 Total: 3.57 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.80 Total: -12.79 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.22 Total: -35.24 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.03 -9.63 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.437 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds