Wall clock time and date at job start Tue Mar 31 2020 10:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47346 * 2 1 4 4 C 1.50705 * 109.47349 * 239.99585 * 2 1 3 5 5 H 1.07994 * 119.99745 * 240.00445 * 4 2 1 6 6 C 1.37871 * 119.99517 * 60.00295 * 4 2 1 7 7 N 1.31517 * 120.00491 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99744 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47152 * 119.99688 * 8 6 4 11 11 H 1.48494 * 109.47204 * 239.99635 * 8 6 4 12 12 C 1.53005 * 109.47245 * 119.99999 * 2 1 3 13 13 N 1.46505 * 109.46784 * 299.99716 * 12 2 1 14 14 C 1.34777 * 120.00115 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.33405 * 125.19357 * 90.00182 * 18 17 16 20 20 C 1.38479 * 114.91077 * 180.02562 * 19 18 17 21 21 Cl 1.73602 * 122.54923 * 179.97438 * 20 19 18 22 22 C 1.33439 * 114.90127 * 0.02562 * 20 19 18 23 23 S 1.75877 * 125.19809 * 269.69862 * 18 17 16 24 24 H 1.09004 * 109.47108 * 300.00289 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00183 * 1 2 3 26 26 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46986 * 299.99746 * 3 2 1 29 29 H 1.08993 * 109.47662 * 59.99968 * 3 2 1 30 30 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47193 * 180.02562 * 12 2 1 32 32 H 1.08992 * 109.47333 * 59.99272 * 12 2 1 33 33 H 0.97003 * 120.00244 * 359.97438 * 13 12 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 35 35 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 36 36 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 37 37 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 38 38 H 1.08001 * 122.54461 * 0.02562 * 19 18 17 39 39 H 1.07998 * 125.20406 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2872 -3.6037 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6696 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2189 4.9000 17 6 1.8842 -0.5022 6.1493 18 6 1.3819 0.2083 7.3797 19 6 0.2355 -0.0586 8.0076 20 6 -0.0170 0.7269 9.1197 21 17 -1.4502 0.5488 10.0831 22 6 0.9245 1.6319 9.3940 23 16 2.2211 1.5111 8.2116 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 0.7089 1.1611 -3.4845 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7488 1.2494 33 1 0.9943 0.7584 2.3564 34 1 0.2841 0.2189 4.8996 35 1 1.7374 1.2466 4.9003 36 1 2.9742 -0.5018 6.1494 37 1 1.5212 -1.5300 6.1492 38 1 -0.4440 -0.8289 7.6739 39 1 0.8975 2.3279 10.2193 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:17 Heat of formation + Delta-G solvation = -46.347793 kcal Electronic energy + Delta-G solvation = -20926.127176 eV Core-core repulsion = 17598.996070 eV Total energy + Delta-G solvation = -3327.131106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.79738 -39.26394 -38.15378 -37.17280 -34.96558 -34.54820 -32.70771 -29.99589 -27.54924 -27.54792 -27.06781 -25.54376 -23.47052 -21.33984 -20.58034 -20.32972 -18.68507 -18.06848 -17.56698 -16.89560 -16.65766 -16.58685 -16.40955 -15.21702 -15.05015 -14.85511 -14.58892 -14.35194 -14.08825 -13.98667 -13.60780 -13.35467 -13.25716 -13.13724 -13.05861 -12.67515 -12.57044 -12.24973 -12.19529 -12.15353 -12.13333 -12.01517 -11.62899 -11.47173 -11.26173 -10.84031 -10.65981 -10.39666 -9.89935 -9.72155 -9.35698 -8.02258 -6.17772 -0.15100 0.34200 0.73019 1.40977 1.45429 1.46817 1.54527 1.62904 1.74122 2.36284 2.52265 3.21413 3.61986 3.92744 4.07985 4.10524 4.25305 4.41002 4.50094 4.53018 4.63680 4.72469 4.74056 4.97702 5.02394 5.07411 5.07449 5.10756 5.13318 5.21138 5.24989 5.39723 5.62978 5.68067 5.68624 6.16818 6.23307 6.44483 6.71632 6.87135 7.37067 7.50142 8.96650 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.002190 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.918472 B =12782.039578 C =13008.152532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.712 5.712 14 C 0.503 3.497 15 O -0.593 6.593 16 C -0.125 4.125 17 C -0.029 4.029 18 C -0.167 4.167 19 C -0.140 4.140 20 C -0.057 4.057 21 Cl -0.056 7.056 22 C -0.213 4.213 23 S 0.164 5.836 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.410 0.590 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 4.844 23.964 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.166 4.166 17 C -0.068 4.068 18 C -0.285 4.285 19 C -0.170 4.170 20 C -0.096 4.096 21 Cl -0.028 7.028 22 C -0.350 4.350 23 S 0.427 5.573 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.247 0.753 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.173 0.827 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.984 5.020 23.756 24.301 hybrid contribution -1.352 -1.015 -0.912 1.921 sum -2.336 4.006 22.844 23.310 Atomic orbital electron populations 1.21680 0.97119 0.98664 1.00486 1.18362 0.93249 0.93049 0.90366 1.21678 0.97924 0.97847 1.00490 1.21314 1.31534 1.12071 0.91649 0.93837 1.25446 0.95193 0.95618 1.00959 1.69913 1.37056 1.23335 1.23507 0.85727 0.78122 0.78745 0.80332 1.20048 1.20758 1.20743 1.21236 0.96924 0.95035 0.84457 1.46181 1.52811 1.31958 1.05432 1.21297 0.79668 0.84276 0.85633 1.90666 1.40484 1.28735 1.87581 1.21682 1.04148 1.01063 0.89668 1.19784 1.01188 0.98482 0.87374 1.24387 0.98970 1.02682 1.02440 1.20002 0.98547 1.02791 0.95658 1.19864 0.91984 1.00768 0.97000 1.98368 1.36971 1.97238 1.70193 1.25854 0.97807 1.05055 1.06270 1.84477 1.20619 1.32134 1.20043 0.94208 0.91982 0.96356 0.96323 0.91993 0.94189 0.93059 0.94469 0.94492 0.75317 0.86439 0.86691 0.90374 0.89534 0.82739 0.79127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.28 0.50 -52.92 -0.03 2.25 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 4 C -0.53 -27.63 8.01 25.60 0.21 -27.43 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.44 5.15 84.65 0.44 1.87 16 7 N -0.90 -47.55 9.35 21.45 0.20 -47.35 16 8 Si 0.94 42.39 29.54 68.60 2.03 44.41 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.10 4.50 86.38 0.39 6.49 16 13 N -0.71 -22.87 4.96 -463.05 -2.30 -25.16 16 14 C 0.50 15.21 7.83 87.66 0.69 15.89 16 15 O -0.59 -22.96 15.98 -3.05 -0.05 -23.01 16 16 C -0.13 -2.42 5.68 29.85 0.17 -2.25 16 17 C -0.03 -0.55 5.00 29.85 0.15 -0.40 16 18 C -0.17 -2.79 5.76 24.59 0.14 -2.65 16 19 C -0.14 -2.33 9.94 21.23 0.21 -2.12 16 20 C -0.06 -0.92 6.27 21.24 0.13 -0.79 16 21 Cl -0.06 -0.90 29.11 -2.72 -0.08 -0.98 16 22 C -0.21 -2.93 11.08 66.73 0.74 -2.19 16 23 S 0.16 2.32 23.33 -56.49 -1.32 1.01 16 24 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 25 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 29 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 30 H 0.26 13.22 8.31 -92.71 -0.77 12.44 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 11.21 6.16 -92.71 -0.57 10.64 16 34 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -60.27 348.72 3.37 -56.90 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.49 Total: 14.88 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.40 Total: -20.70 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -2.10 Total: -72.52 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.32 Total: 1.01 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -60.27 3.37 -56.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.549 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds