Wall clock time and date at job start Tue Mar 31 2020 10:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46681 * 2 1 4 4 C 1.50697 * 109.47427 * 239.99402 * 2 1 3 5 5 H 1.08001 * 120.00196 * 241.34786 * 4 2 1 6 6 C 1.37881 * 119.99462 * 61.34683 * 4 2 1 7 7 N 1.31513 * 119.99360 * 193.97379 * 6 4 2 8 8 Si 1.86793 * 120.00317 * 13.97867 * 6 4 2 9 9 H 1.48496 * 109.47312 * 84.54487 * 8 6 4 10 10 H 1.48497 * 109.47252 * 204.54929 * 8 6 4 11 11 H 1.48502 * 109.46982 * 324.54351 * 8 6 4 12 12 C 1.53007 * 109.46928 * 119.99386 * 2 1 3 13 13 N 1.46498 * 109.47322 * 300.00445 * 12 2 1 14 14 C 1.34769 * 120.00148 * 180.02562 * 13 12 2 15 15 O 1.21278 * 120.00041 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00280 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47509 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47509 * 180.02562 * 17 16 14 19 19 C 1.33351 * 125.18844 * 90.00189 * 18 17 16 20 20 C 1.38471 * 114.93040 * 180.02562 * 19 18 17 21 21 C 1.33504 * 114.88648 * 359.97438 * 20 19 18 22 22 Cl 1.73592 * 125.21266 * 179.97438 * 21 20 19 23 23 S 1.75882 * 125.18871 * 270.00308 * 18 17 16 24 24 H 1.08998 * 109.47524 * 309.36648 * 1 2 3 25 25 H 1.08994 * 109.47058 * 69.37680 * 1 2 3 26 26 H 1.09004 * 109.46914 * 189.37250 * 1 2 3 27 27 H 1.08999 * 109.46477 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46824 * 299.98918 * 3 2 1 29 29 H 1.08990 * 109.47519 * 60.00103 * 3 2 1 30 30 H 0.97001 * 119.99676 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47081 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46900 * 59.99945 * 12 2 1 33 33 H 0.97005 * 119.99549 * 359.97438 * 13 12 2 34 34 H 1.08999 * 109.47368 * 59.99661 * 16 14 13 35 35 H 1.09000 * 109.47525 * 299.99865 * 16 14 13 36 36 H 1.08999 * 109.47060 * 60.00094 * 17 16 14 37 37 H 1.09004 * 109.47183 * 300.00544 * 17 16 14 38 38 H 1.07997 * 122.53388 * 0.02562 * 19 18 17 39 39 H 1.07998 * 122.55971 * 179.72784 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6353 -1.6011 -1.1313 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9728 -3.5458 8 14 1.0276 1.5004 -2.6685 9 1 2.1417 2.4815 -2.7084 10 1 0.2470 1.5862 -3.9288 11 1 0.1417 1.8041 -1.5160 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8775 -0.4905 3.6696 15 8 2.5748 -1.4766 3.7810 16 6 1.3756 0.2202 4.9000 17 6 1.8854 -0.5010 6.1493 18 6 1.3830 0.2094 7.3797 19 6 0.2370 -0.0576 8.0071 20 6 -0.0163 0.7275 9.1193 21 6 0.9261 1.6322 9.3947 22 17 0.8820 2.7515 10.7208 23 16 2.2187 1.5172 8.2073 24 1 -0.3634 0.6518 0.7945 25 1 -0.3633 0.3619 -0.9618 26 1 -0.3633 -1.0140 0.1674 27 1 3.1299 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6982 -0.6301 -4.4267 31 1 3.1300 -0.7208 1.2496 32 1 1.6766 -1.7488 1.2495 33 1 0.9942 0.7584 2.3563 34 1 0.2856 0.2203 4.9003 35 1 1.7389 1.2479 4.8996 36 1 2.9754 -0.5013 6.1492 37 1 1.5218 -1.5286 6.1495 38 1 -0.4423 -0.8278 7.6730 39 1 -0.9099 0.6191 9.7160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:22 Heat of formation + Delta-G solvation = -10.709166 kcal Electronic energy + Delta-G solvation = -20965.175200 eV Core-core repulsion = 17639.589501 eV Total energy + Delta-G solvation = -3325.585699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61069 -38.43958 -37.06771 -36.76796 -33.75485 -33.34844 -31.52706 -29.09060 -26.48055 -26.30268 -25.18402 -24.46998 -22.78332 -20.11272 -19.77348 -19.17415 -17.90725 -16.83755 -16.15633 -16.09464 -15.54022 -15.35033 -15.05855 -14.22104 -14.15085 -13.83047 -13.56573 -13.23475 -12.99569 -12.90671 -12.71974 -12.53360 -12.38265 -12.22665 -12.07831 -11.62468 -11.58236 -11.31562 -11.15115 -10.99015 -10.47281 -10.35227 -10.20588 -10.10302 -9.63549 -9.15696 -8.92060 -8.85121 -8.71716 -8.58850 -8.47606 -6.17532 -4.14938 0.43726 0.74565 1.46891 1.87595 2.24227 2.89420 3.21389 3.28347 3.36365 3.55307 4.32709 4.44612 4.73926 4.85237 4.92966 5.05855 5.13025 5.20066 5.41452 5.48359 5.65106 5.74142 5.78685 5.86320 6.01134 6.02080 6.04304 6.31699 6.43803 6.48553 6.58818 6.65583 6.74188 6.92393 7.18253 7.39103 7.68931 7.87328 8.41099 8.53757 8.87850 9.46220 10.95533 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.002265 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.680707 B =12360.388894 C =12753.329025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.722 5.722 14 C 0.505 3.495 15 O -0.549 6.549 16 C -0.138 4.138 17 C -0.035 4.035 18 C -0.159 4.159 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.158 4.158 22 Cl -0.019 7.019 23 S 0.151 5.849 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 7.167 25.638 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.373 5.373 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.179 4.179 17 C -0.075 4.075 18 C -0.277 4.277 19 C -0.166 4.166 20 C -0.146 4.146 21 C -0.301 4.301 22 Cl 0.009 6.991 23 S 0.413 5.587 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.167 0.833 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.606 7.302 25.403 26.559 hybrid contribution -1.986 0.829 0.043 2.153 sum -4.592 8.131 25.446 27.105 Atomic orbital electron populations 1.22298 0.97850 0.99825 0.99983 1.18726 0.92511 0.92258 0.93835 1.22362 1.01209 0.98324 0.98583 1.20712 1.34099 1.12337 0.87979 0.90551 1.24984 0.94688 0.97319 0.95808 1.69951 1.48111 1.35899 0.98732 0.87287 0.79332 0.85535 0.76000 1.21358 1.23400 1.17528 1.21517 0.98607 0.95826 0.82158 1.46333 1.52849 1.31854 1.06235 1.20462 0.80783 0.84860 0.84816 1.90696 1.38435 1.26636 1.86968 1.21695 1.02970 1.00772 0.92422 1.19932 1.01832 0.98710 0.87010 1.24727 0.99026 1.01444 1.02503 1.20016 0.97878 1.02553 0.96138 1.20200 1.00057 0.95515 0.98819 1.25244 1.02809 1.02548 0.99513 1.98367 1.98013 1.59342 1.43345 1.84549 1.20941 1.33371 1.19810 0.95941 0.92512 0.93405 0.92788 0.94027 0.95172 0.92539 0.91984 0.91865 0.76856 0.88620 0.88930 0.89567 0.88572 0.83278 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.53 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 4 C -0.51 -13.57 8.62 -34.44 -0.30 -13.87 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.89 20.79 22.79 -169.99 -3.87 16.92 16 9 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 10 H -0.31 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.25 -5.29 4.65 56.52 0.26 -5.02 16 12 C 0.14 2.73 4.49 -4.04 -0.02 2.71 16 13 N -0.72 -10.99 5.00 -60.30 -0.30 -11.30 16 14 C 0.51 7.38 7.83 -10.99 -0.09 7.29 16 15 O -0.55 -10.14 15.98 5.56 0.09 -10.06 16 16 C -0.14 -1.36 5.68 -27.89 -0.16 -1.52 16 17 C -0.04 -0.34 5.00 -27.89 -0.14 -0.48 16 18 C -0.16 -1.39 5.76 -36.02 -0.21 -1.60 16 19 C -0.14 -1.08 10.05 -41.20 -0.41 -1.50 16 20 C -0.11 -0.90 10.13 -41.15 -0.42 -1.31 16 21 C -0.16 -1.37 7.10 29.08 0.21 -1.17 16 22 Cl -0.02 -0.16 29.29 -51.86 -1.52 -1.68 16 23 S 0.15 1.31 23.33 -107.50 -2.51 -1.20 16 24 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 25 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 26 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 29 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.40 5.18 6.26 -40.82 -0.26 4.92 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -30.30 338.97 -8.61 -38.91 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.24 Total: 3.00 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.14 Total: -14.13 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.47 Total: -36.88 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -3.87 Total: 16.92 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.30 -8.61 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.202 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds