Wall clock time and date at job start Tue Mar 31 2020 11:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 5 5 O 1.21283 * 120.00521 * 119.72525 * 4 2 1 6 6 N 1.34784 * 119.99774 * 299.99631 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 C 1.53003 * 109.46708 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46870 * 299.99298 * 8 7 6 10 10 C 1.53000 * 109.47499 * 59.99732 * 8 7 6 11 11 C 1.50708 * 109.46949 * 179.97438 * 8 7 6 12 12 H 1.07997 * 119.99690 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00050 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99915 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00185 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46940 * 60.00393 * 15 13 11 17 17 H 1.48496 * 109.47341 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47121 * 300.00922 * 15 13 11 19 19 C 1.50700 * 109.47038 * 239.99584 * 2 1 3 20 20 C 1.33348 * 125.18631 * 120.00058 * 19 2 1 21 21 C 1.38473 * 114.93131 * 179.97438 * 20 19 2 22 22 C 1.33495 * 114.88557 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 125.21277 * 180.02562 * 22 21 20 24 24 S 1.75878 * 125.19586 * 299.69661 * 19 2 1 25 25 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 26 26 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 28 28 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 29 29 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 30 30 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 31 31 H 1.09007 * 109.46830 * 60.00773 * 9 8 7 32 32 H 1.09005 * 109.46980 * 180.02562 * 9 8 7 33 33 H 1.08994 * 109.47292 * 300.00516 * 9 8 7 34 34 H 1.08992 * 109.46855 * 59.99654 * 10 8 7 35 35 H 1.08995 * 109.47095 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.46768 * 299.99888 * 10 8 7 37 37 H 0.97000 * 120.00246 * 179.97438 * 14 13 11 38 38 H 1.08005 * 122.53893 * 0.02562 * 20 19 2 39 39 H 1.08000 * 122.55793 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7254 -1.6995 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1901 -0.9441 3.6507 8 6 1.6806 -0.2223 4.8999 9 6 2.1965 1.2181 4.9027 10 6 0.1506 -0.2161 4.8971 11 6 2.1773 -0.9367 6.1305 12 1 2.7942 -1.8176 6.0313 13 6 1.8441 -0.4657 7.3827 14 7 1.0924 0.6067 7.5033 15 14 2.4592 -1.3515 8.9079 16 1 3.9441 -1.3590 8.9109 17 1 1.9648 -0.6510 10.1204 18 1 1.9572 -2.7491 8.9049 19 6 2.0323 -0.7105 -1.2304 20 6 2.8022 -0.1646 -2.1725 21 6 3.1406 -1.0126 -3.2135 22 6 2.6440 -2.2479 -3.1159 23 17 2.8991 -3.5231 -4.2660 24 16 1.6989 -2.3883 -1.6393 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.1523 0.5411 2.5436 29 1 1.8222 -1.9701 3.6490 30 1 3.2800 -0.9489 3.6525 31 1 1.8368 1.7345 4.0127 32 1 1.8339 1.7321 5.7929 33 1 3.2864 1.2136 4.9047 34 1 -0.2168 -1.2423 4.8951 35 1 -0.2123 0.2976 5.7873 36 1 -0.2089 0.3003 4.0071 37 1 0.8577 0.9379 8.3843 38 1 3.1372 0.8611 -2.1266 39 1 3.7591 -0.6986 -4.0413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:48 Heat of formation + Delta-G solvation = -38.028562 kcal Electronic energy + Delta-G solvation = -21612.795988 eV Core-core repulsion = 18286.025632 eV Total energy + Delta-G solvation = -3326.770357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02024 -38.99594 -38.12453 -37.54891 -35.17936 -34.61449 -32.57676 -29.41381 -27.54290 -27.50312 -26.92811 -25.56544 -24.02665 -21.42681 -20.63358 -20.48996 -18.84744 -18.01448 -17.56494 -16.92212 -16.57503 -16.48143 -16.11791 -15.09985 -14.93499 -14.80591 -14.54401 -14.39355 -14.25152 -13.95992 -13.69994 -13.33246 -13.16882 -13.05969 -12.83303 -12.69732 -12.62579 -12.61774 -12.30576 -12.22663 -12.12941 -11.96905 -11.58202 -11.46599 -11.25097 -10.79894 -10.66089 -10.38886 -9.92298 -9.52855 -9.42584 -8.02125 -6.17628 -0.17411 0.16517 0.93415 1.25876 1.43558 1.45174 1.51352 1.63768 1.68708 2.35694 2.51753 3.21527 3.47163 3.82036 4.06367 4.29459 4.36598 4.46036 4.53136 4.54858 4.73163 4.81723 4.84580 4.98061 5.02186 5.07938 5.11916 5.13286 5.21121 5.24601 5.38459 5.40364 5.60911 5.67908 5.69390 6.17940 6.23502 6.44721 6.67865 6.86631 7.32532 7.50114 8.96352 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029848 B = 0.002718 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.869618 B =10299.127321 C =10730.806770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 H 0.148 0.852 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.706 5.706 7 C 0.149 3.851 8 C 0.053 3.947 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.531 4.531 12 H 0.042 0.958 13 C 0.030 3.970 14 N -0.898 5.898 15 Si 0.942 3.058 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.278 1.278 19 C -0.156 4.156 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.172 4.172 23 Cl -0.019 7.019 24 S 0.144 5.856 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.410 0.590 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.260 0.740 38 H 0.176 0.824 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 2.525 -21.435 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 H 0.166 0.834 4 C 0.288 3.712 5 O -0.459 6.459 6 N -0.357 5.357 7 C 0.026 3.974 8 C 0.052 3.948 9 C -0.180 4.180 10 C -0.179 4.179 11 C -0.570 4.570 12 H 0.060 0.940 13 C -0.170 4.170 14 N -0.536 5.536 15 Si 0.769 3.231 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.204 1.204 19 C -0.275 4.275 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.316 4.316 23 Cl 0.010 6.990 24 S 0.409 5.591 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.248 0.752 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.194 0.806 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.037 0.629 -20.772 20.881 hybrid contribution 1.133 0.413 0.528 1.316 sum -0.904 1.042 -20.244 20.291 Atomic orbital electron populations 1.21901 0.89998 1.02951 1.05187 1.19952 0.98931 1.00701 0.86217 0.83410 1.21115 0.79981 0.84593 0.85505 1.90706 1.39909 1.28019 1.87252 1.46068 1.52931 1.31718 1.05026 1.21233 0.96929 0.94941 0.84346 1.18335 0.93282 0.93025 0.90133 1.21683 0.97890 0.97799 1.00589 1.21675 0.97030 0.98632 1.00566 1.21270 1.32041 1.11924 0.91764 0.93964 1.25410 0.95138 0.95591 1.00831 1.69888 1.37012 1.23074 1.23660 0.85873 0.78618 0.78858 0.79795 1.20341 1.20752 1.20378 1.24205 1.05961 0.96406 1.00919 1.20253 0.99288 1.02896 0.93411 1.20421 1.01937 0.90902 1.01558 1.25459 1.11634 0.95360 0.99145 1.98348 1.95528 1.48670 1.56482 1.84698 1.49774 1.11271 1.13394 0.88476 0.93304 0.89802 0.75212 0.94631 0.94538 0.94024 0.91928 0.96413 0.96486 0.91936 0.94034 0.93003 0.80645 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 2 C -0.04 -0.72 3.10 -12.29 -0.04 -0.76 16 3 H 0.15 2.10 8.08 -2.39 -0.02 2.08 16 4 C 0.50 15.50 7.12 87.65 0.62 16.12 16 5 O -0.58 -22.95 15.23 -3.04 -0.05 -22.99 16 6 N -0.71 -22.39 4.85 -463.06 -2.25 -24.64 16 7 C 0.15 6.15 4.50 86.38 0.39 6.54 16 8 C 0.05 2.37 0.50 -52.92 -0.03 2.34 16 9 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 10 C -0.12 -5.18 8.08 71.98 0.58 -4.59 16 11 C -0.53 -27.81 8.01 25.60 0.21 -27.60 16 12 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 13 C 0.03 1.58 5.15 84.65 0.44 2.01 16 14 N -0.90 -47.11 9.35 21.45 0.20 -46.91 16 15 Si 0.94 42.30 29.54 68.60 2.03 44.32 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 C -0.16 -3.51 4.61 24.58 0.11 -3.39 16 20 C -0.13 -2.37 10.01 21.22 0.21 -2.15 16 21 C -0.12 -2.18 10.13 21.25 0.22 -1.97 16 22 C -0.17 -3.88 7.10 66.74 0.47 -3.41 16 23 Cl -0.02 -0.39 29.29 -2.72 -0.08 -0.47 16 24 S 0.14 3.69 22.16 -56.49 -1.25 2.44 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 0.96 8.01 -2.39 -0.02 0.94 16 27 H 0.08 1.22 7.57 -2.39 -0.02 1.20 16 28 H 0.41 10.87 5.59 -92.70 -0.52 10.35 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 32 H 0.06 3.00 6.07 -2.38 -0.01 2.98 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 36 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 37 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -61.95 345.14 3.57 -58.39 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.55 Total: 13.04 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 4.42 Total: -23.18 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.04 Total: -71.55 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.25 Total: 2.44 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -61.95 3.57 -58.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.357 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds