Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47144 * 2 1 4 4 C 1.50702 * 109.47524 * 239.99528 * 2 1 3 5 5 O 1.21280 * 119.99974 * 240.00148 * 4 2 1 6 6 N 1.34774 * 119.99652 * 60.00001 * 4 2 1 7 7 C 1.46507 * 119.99351 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46679 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.46829 * 299.99750 * 8 7 6 10 10 C 1.52998 * 109.47016 * 59.99629 * 8 7 6 11 11 C 1.50702 * 109.46980 * 179.97438 * 8 7 6 12 12 H 1.08002 * 119.99759 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99872 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00269 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99849 * 180.02562 * 13 11 8 16 16 H 1.48490 * 109.47351 * 90.00377 * 15 13 11 17 17 H 1.48506 * 109.47172 * 210.00584 * 15 13 11 18 18 H 1.48510 * 109.47100 * 330.00108 * 15 13 11 19 19 C 1.50706 * 109.47016 * 119.99159 * 2 1 3 20 20 C 1.33344 * 125.18918 * 239.72596 * 19 2 1 21 21 C 1.38478 * 114.92514 * 179.79788 * 20 19 2 22 22 C 1.33500 * 114.88413 * 0.49388 * 21 20 19 23 23 Cl 1.73599 * 125.20752 * 179.71981 * 22 21 20 24 24 S 1.75880 * 109.58475 * 359.73517 * 22 21 20 25 25 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47552 * 300.00336 * 1 2 3 27 27 H 1.09002 * 109.46958 * 60.00701 * 1 2 3 28 28 H 0.96996 * 120.00414 * 0.02562 * 6 4 2 29 29 H 1.08993 * 109.46898 * 299.99879 * 7 6 4 30 30 H 1.09001 * 109.47340 * 59.99895 * 7 6 4 31 31 H 1.08994 * 109.46945 * 60.00440 * 9 8 7 32 32 H 1.09002 * 109.46633 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47204 * 300.00204 * 9 8 7 34 34 H 1.09001 * 109.47002 * 60.00130 * 10 8 7 35 35 H 1.09002 * 109.46735 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47722 * 300.00150 * 10 8 7 37 37 H 0.96996 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.07995 * 122.53739 * 359.97264 * 20 19 2 39 39 H 1.08005 * 122.55592 * 180.23479 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1949 -0.9412 -3.6506 8 6 1.6855 -0.2196 -4.8999 9 6 0.1555 -0.2185 -4.9001 10 6 2.1965 1.2226 -4.8999 11 6 2.1880 -0.9300 -6.1303 12 1 2.8082 -1.8086 -6.0311 13 6 1.8551 -0.4590 -7.3826 14 7 1.0994 0.6105 -7.5034 15 14 2.4773 -1.3401 -8.9077 16 1 1.4988 -2.3813 -9.3117 17 1 2.6428 -0.3611 -10.0121 18 1 3.7853 -1.9782 -8.6117 19 6 2.0323 -0.7103 1.2306 20 6 2.8064 -0.1658 2.1700 21 6 3.1397 -1.0119 3.2142 22 6 2.6436 -2.2475 3.1163 23 17 2.8982 -3.5223 4.2669 24 16 1.6931 -2.3861 1.6431 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 1.1495 0.5387 -2.5436 29 1 3.2848 -0.9416 -3.6506 30 1 1.8312 -1.9687 -3.6504 31 1 -0.2075 0.2956 -4.0102 32 1 -0.2073 0.2960 -5.7899 33 1 -0.2086 -1.2460 -4.9001 34 1 3.2865 1.2218 -4.8997 35 1 1.8340 1.7365 -5.7901 36 1 1.8335 1.7367 -4.0100 37 1 0.8655 0.9421 -8.3844 38 1 3.1454 0.8585 2.1215 39 1 3.7575 -0.6975 4.0425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = -23.531970 kcal Electronic energy + Delta-G solvation = -21611.613186 eV Core-core repulsion = 18285.471449 eV Total energy + Delta-G solvation = -3326.141737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.74276 -38.04196 -36.80913 -36.33946 -33.97967 -33.16757 -30.82226 -28.54192 -25.86605 -25.76980 -25.23189 -24.54349 -22.96794 -20.14763 -19.67278 -18.88353 -17.68206 -16.77469 -15.96063 -15.80815 -15.19408 -14.89771 -14.67118 -13.90116 -13.80728 -13.65046 -13.32299 -13.08199 -12.91322 -12.75850 -12.35802 -12.23389 -11.98433 -11.80526 -11.49551 -11.37462 -11.23021 -11.11545 -10.89417 -10.72147 -10.69345 -10.42609 -10.23201 -9.67845 -9.61899 -9.30268 -8.83175 -8.63031 -8.53592 -8.46156 -8.34994 -6.05314 -4.15422 0.71266 1.04949 1.80894 2.13537 2.48295 2.94131 3.26426 3.33582 3.37359 3.67272 4.36749 4.37923 4.83287 4.93073 5.11879 5.21673 5.22314 5.32932 5.51578 5.61406 5.79323 5.90743 6.00300 6.17666 6.21823 6.28560 6.46343 6.73046 6.77387 6.88407 6.96678 6.97459 7.30994 7.51500 7.66258 7.97154 7.97414 8.10840 8.34775 8.60580 8.85330 9.50718 10.96119 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029852 B = 0.002717 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.727639 B =10302.177301 C =10732.112680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 H 0.115 0.885 4 C 0.504 3.496 5 O -0.539 6.539 6 N -0.712 5.712 7 C 0.132 3.868 8 C 0.057 3.943 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.507 4.507 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.143 4.143 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.165 4.165 23 Cl -0.024 7.024 24 S 0.199 5.801 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.398 0.602 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.006 0.994 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.146 0.854 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 0.796 19.891 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 H 0.133 0.867 4 C 0.288 3.712 5 O -0.416 6.416 6 N -0.363 5.363 7 C 0.010 3.990 8 C 0.056 3.944 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.262 4.262 20 C -0.167 4.167 21 C -0.151 4.151 22 C -0.309 4.309 23 Cl 0.005 6.995 24 S 0.463 5.537 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.234 0.766 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.163 0.837 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.926 -1.116 19.223 19.351 hybrid contribution 1.046 0.967 -0.122 1.429 sum -0.880 -0.149 19.101 19.122 Atomic orbital electron populations 1.21864 0.91617 1.03302 1.03464 1.19927 0.97739 1.00061 0.89221 0.86704 1.20282 0.81153 0.85097 0.84694 1.90717 1.37983 1.26293 1.86646 1.46272 1.52457 1.31744 1.05799 1.21744 0.98201 0.95793 0.83298 1.18352 0.92781 0.92739 0.90541 1.21836 0.97756 0.99194 1.00084 1.21838 0.98623 0.98360 1.00090 1.20987 1.31545 1.12091 0.89894 0.92440 1.24872 0.94840 0.94898 0.98857 1.69794 1.36712 1.22708 1.23263 0.86575 0.79356 0.79405 0.82573 1.20696 1.21252 1.19885 1.24077 1.04704 0.97332 1.00112 1.19868 1.00867 1.01669 0.94299 1.20061 1.02596 0.91517 1.00963 1.25364 1.11383 0.94627 0.99493 1.98349 1.95594 1.48716 1.56886 1.84521 1.47905 1.09275 1.11953 0.91838 0.90976 0.90780 0.76647 0.92668 0.92656 0.97525 0.89568 0.95421 0.95423 0.89557 0.97517 0.92981 0.83667 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.01 37.16 0.33 -1.07 16 2 C -0.05 -0.54 3.10 -92.92 -0.29 -0.83 16 3 H 0.12 1.09 8.08 -51.93 -0.42 0.67 16 4 C 0.50 8.14 7.12 -10.99 -0.08 8.06 16 5 O -0.54 -10.69 15.25 5.56 0.08 -10.61 16 6 N -0.71 -11.86 4.85 -60.29 -0.29 -12.15 16 7 C 0.13 2.71 4.50 -4.03 -0.02 2.69 16 8 C 0.06 1.27 0.50 -155.65 -0.08 1.19 16 9 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 10 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 11 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 14 N -0.89 -23.22 9.35 55.43 0.52 -22.70 16 15 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.14 -1.77 4.60 -36.01 -0.17 -1.93 16 20 C -0.14 -1.49 10.01 -41.20 -0.41 -1.90 16 21 C -0.12 -1.28 10.13 -41.15 -0.42 -1.69 16 22 C -0.16 -1.96 7.10 29.07 0.21 -1.75 16 23 Cl -0.02 -0.26 29.29 -51.86 -1.52 -1.78 16 24 S 0.20 2.57 22.17 -107.50 -2.38 0.19 16 25 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.67 7.57 -51.93 -0.39 0.28 16 28 H 0.40 5.87 5.58 -40.82 -0.23 5.65 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 32 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -28.19 345.14 -9.40 -37.59 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.30 Total: 2.82 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.68 Total: -14.04 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.23 Total: -34.86 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.38 Total: 0.19 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.52 Total: -1.78 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.19 -9.40 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.056 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds