Wall clock time and date at job start Tue Mar 31 2020 11:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99727 * 2 1 4 4 C 1.52997 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47036 * 64.99863 * 4 3 2 6 6 C 1.36944 * 119.99987 * 274.34037 * 5 4 3 7 7 H 1.07994 * 119.99781 * 145.98913 * 6 5 4 8 8 C 1.38812 * 120.00009 * 325.99043 * 6 5 4 9 9 N 1.31622 * 119.99554 * 335.40531 * 8 6 5 10 10 Si 1.86790 * 119.99987 * 155.40981 * 8 6 5 11 11 H 1.48502 * 109.47360 * 59.99869 * 10 8 6 12 12 H 1.48504 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47388 * 299.99643 * 10 8 6 14 14 C 1.46496 * 120.00410 * 94.34261 * 5 4 3 15 15 C 1.53008 * 109.47089 * 270.00340 * 14 5 4 16 16 S 1.81398 * 109.47007 * 179.97438 * 15 14 5 17 17 C 1.76204 * 102.99745 * 179.97438 * 16 15 14 18 18 C 1.38956 * 120.06548 * 0.27616 * 17 16 15 19 19 C 1.38088 * 119.92952 * 180.27125 * 18 17 16 20 20 C 1.38405 * 120.06635 * 359.45309 * 19 18 17 21 21 Cl 1.73602 * 119.93066 * 180.29892 * 20 19 18 22 22 C 1.38393 * 120.13190 * 0.26949 * 20 19 18 23 23 C 1.38083 * 120.06897 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.46546 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47198 * 300.00302 * 1 2 3 26 26 H 1.09004 * 109.46660 * 60.00820 * 1 2 3 27 27 H 1.08995 * 109.47354 * 59.99752 * 3 2 1 28 28 H 1.09004 * 109.46792 * 299.99248 * 3 2 1 29 29 H 1.08994 * 109.47266 * 304.99822 * 4 3 2 30 30 H 1.09002 * 109.47150 * 184.99472 * 4 3 2 31 31 H 0.96998 * 119.99529 * 179.97438 * 9 8 6 32 32 H 1.08991 * 109.47690 * 149.99760 * 14 5 4 33 33 H 1.09002 * 109.47034 * 29.99716 * 14 5 4 34 34 H 1.08991 * 109.47328 * 59.99198 * 15 14 5 35 35 H 1.09002 * 109.46673 * 299.99597 * 15 14 5 36 36 H 1.07995 * 120.03692 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.97024 * 179.72477 * 19 18 17 38 38 H 1.08003 * 119.96265 * 180.02562 * 22 20 19 39 39 H 1.08004 * 120.03054 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0127 -0.8003 -1.3630 7 1 3.7916 -1.2703 -2.3098 8 6 4.3335 -1.5792 -0.2596 9 7 5.0513 -1.0699 0.7190 10 14 3.7466 -3.3499 -0.1639 11 1 4.2919 -4.1150 -1.3139 12 1 4.2191 -3.9601 1.1048 13 1 2.2626 -3.3825 -0.2067 14 6 4.3793 1.4028 -2.3824 15 6 3.1596 1.6985 -3.2576 16 16 3.6581 2.7377 -4.6583 17 6 2.1486 2.9683 -5.5376 18 6 0.9742 2.3935 -5.0674 19 6 -0.2061 2.5713 -5.7617 20 6 -0.2222 3.3307 -6.9188 21 17 -1.7095 3.5585 -7.7847 22 6 0.9448 3.9092 -7.3864 23 6 2.1293 3.7299 -6.6997 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8508 0.5687 0.8427 30 1 3.9784 2.1766 0.0901 31 1 5.2751 -1.6140 1.4902 32 1 5.1318 0.8800 -2.9726 33 1 4.7953 2.3392 -2.0107 34 1 2.4071 2.2213 -2.6674 35 1 2.7436 0.7621 -3.6294 36 1 0.9854 1.8042 -4.1624 37 1 -1.1183 2.1212 -5.3992 38 1 0.9290 4.5016 -8.2893 39 1 3.0396 4.1820 -7.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459532330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:57 Heat of formation + Delta-G solvation = -6.047709 kcal Electronic energy + Delta-G solvation = -21533.157562 eV Core-core repulsion = 18207.773999 eV Total energy + Delta-G solvation = -3325.383563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.20682 -37.35418 -36.58849 -35.61224 -32.11101 -31.29350 -30.88880 -30.10155 -28.06528 -25.71015 -24.35679 -23.05783 -22.88505 -21.80876 -20.29266 -17.89478 -16.88267 -16.58447 -15.87147 -15.57781 -15.07642 -14.97734 -14.58897 -14.30886 -14.11130 -14.03635 -13.72864 -13.69327 -13.18931 -12.90081 -12.39757 -11.96996 -11.93435 -11.84840 -11.62074 -11.33196 -11.01361 -10.98047 -10.81351 -10.66196 -10.60893 -10.17861 -10.00966 -9.90804 -9.77447 -9.52096 -9.26024 -8.84063 -8.45327 -7.29784 -6.69365 -5.77385 -3.31379 0.88103 1.10693 1.62240 2.00244 2.64929 3.39440 3.43490 3.48571 3.55244 4.53565 4.58954 4.65250 4.68107 5.09450 5.20411 5.30009 5.36555 5.40425 5.47651 5.63417 5.70872 5.72934 5.75878 5.87879 5.97475 6.04771 6.07442 6.09331 6.17186 6.21468 6.43089 6.51254 6.52266 6.60229 6.78034 7.60503 7.82518 8.02760 8.49315 9.14873 9.80979 10.31206 11.24247 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003318 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.805386 B = 8437.126843 C = 9072.395118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.047 3.953 4 C 0.135 3.865 5 N -0.566 5.566 6 C -0.252 4.252 7 H 0.059 0.941 8 C 0.026 3.974 9 N -0.888 5.888 10 Si 0.898 3.102 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.162 3.838 15 C -0.116 4.116 16 S -0.123 6.123 17 C -0.068 4.068 18 C -0.123 4.123 19 C -0.088 4.088 20 C -0.050 4.050 21 Cl -0.078 7.078 22 C -0.093 4.093 23 C -0.096 4.096 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.255 0.745 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 10.250 -10.986 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C -0.032 4.032 4 C 0.008 3.992 5 N -0.285 5.285 6 C -0.381 4.381 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.531 5.531 10 Si 0.728 3.272 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.033 3.967 15 C -0.268 4.268 16 S 0.122 5.878 17 C -0.182 4.182 18 C -0.147 4.147 19 C -0.109 4.109 20 C -0.079 4.079 21 Cl -0.049 7.049 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.052 10.367 -11.004 17.129 hybrid contribution -2.324 -1.096 0.270 2.584 sum -10.376 9.271 -10.734 17.574 Atomic orbital electron populations 1.22640 0.84396 1.01496 0.98324 1.88264 1.16376 1.27379 1.94770 1.23446 0.98743 0.84266 0.96733 1.21194 0.87829 0.96765 0.93391 1.43722 1.73749 1.02430 1.08604 1.18781 1.41578 0.80665 0.97118 0.92352 1.24887 0.96601 0.97729 0.98201 1.69965 1.35787 1.36936 1.10385 0.86455 0.79417 0.84686 0.76657 1.21121 1.21913 1.20630 1.20554 0.91241 0.95199 0.89751 1.25017 1.06399 1.00033 0.95316 1.85487 1.09939 1.64204 1.28147 1.22042 0.97725 0.99911 0.98529 1.21286 0.91356 1.01091 1.00976 1.20953 0.98730 0.97671 0.93543 1.20852 0.87595 1.03402 0.96091 1.98357 1.33991 1.96176 1.76397 1.20931 0.90713 0.99527 1.00174 1.20736 0.98044 0.99174 0.94089 0.90730 0.95496 0.95460 0.95713 0.95663 0.87353 0.93907 0.93560 0.92036 0.93671 0.90341 0.89525 0.84608 0.84853 0.84727 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.55 9.97 -35.23 -0.35 -7.90 16 3 C 0.05 0.92 6.28 37.16 0.23 1.16 16 4 C 0.13 2.99 5.83 -4.04 -0.02 2.96 16 5 N -0.57 -13.18 2.45 -173.24 -0.42 -13.61 16 6 C -0.25 -6.64 8.75 -15.06 -0.13 -6.77 16 7 H 0.06 1.56 7.94 -52.49 -0.42 1.14 16 8 C 0.03 0.71 4.95 -17.43 -0.09 0.62 16 9 N -0.89 -25.00 11.37 55.49 0.63 -24.37 16 10 Si 0.90 21.86 29.62 -169.99 -5.03 16.83 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.16 3.16 5.72 -4.04 -0.02 3.13 16 15 C -0.12 -1.94 4.65 37.16 0.17 -1.76 16 16 S -0.12 -1.80 21.92 -107.50 -2.36 -4.16 16 17 C -0.07 -0.91 6.11 -39.05 -0.24 -1.15 16 18 C -0.12 -1.61 9.36 -39.37 -0.37 -1.97 16 19 C -0.09 -1.04 9.82 -39.57 -0.39 -1.43 16 20 C -0.05 -0.56 6.32 -39.46 -0.25 -0.81 16 21 Cl -0.08 -0.79 28.95 -51.86 -1.50 -2.29 16 22 C -0.09 -0.98 9.82 -39.58 -0.39 -1.37 16 23 C -0.10 -1.10 9.79 -39.37 -0.39 -1.49 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.46 6.46 -51.93 -0.34 0.12 16 29 H 0.11 2.80 5.38 -51.93 -0.28 2.52 16 30 H 0.04 0.86 7.84 -51.93 -0.41 0.45 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 33 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.08 1.29 6.05 -51.93 -0.31 0.97 16 35 H 0.09 1.55 7.76 -51.92 -0.40 1.14 16 36 H 0.14 1.83 5.88 -52.49 -0.31 1.52 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -28.27 352.28 -9.88 -38.15 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.38 Total: -0.68 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.77 Total: -7.28 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.21 Total: -37.97 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.35 Total: -7.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.36 Total: -4.16 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.27 -9.88 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459532330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.102 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds