Wall clock time and date at job start Tue Mar 31 2020 11:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99727 * 2 1 4 4 C 1.52997 * 109.47018 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47036 * 64.99863 * 4 3 2 6 6 C 1.36944 * 119.99987 * 274.34037 * 5 4 3 7 7 H 1.07994 * 119.99781 * 145.98913 * 6 5 4 8 8 C 1.38812 * 120.00009 * 325.99043 * 6 5 4 9 9 N 1.31622 * 119.99554 * 335.40531 * 8 6 5 10 10 Si 1.86790 * 119.99987 * 155.40981 * 8 6 5 11 11 H 1.48502 * 109.47360 * 59.99869 * 10 8 6 12 12 H 1.48504 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47388 * 299.99643 * 10 8 6 14 14 C 1.46496 * 120.00410 * 94.34261 * 5 4 3 15 15 C 1.53008 * 109.47089 * 270.00340 * 14 5 4 16 16 S 1.81398 * 109.47007 * 179.97438 * 15 14 5 17 17 C 1.76204 * 102.99745 * 179.97438 * 16 15 14 18 18 C 1.38956 * 120.06548 * 0.27616 * 17 16 15 19 19 C 1.38088 * 119.92952 * 180.27125 * 18 17 16 20 20 C 1.38405 * 120.06635 * 359.45309 * 19 18 17 21 21 Cl 1.73602 * 119.93066 * 180.29892 * 20 19 18 22 22 C 1.38393 * 120.13190 * 0.26949 * 20 19 18 23 23 C 1.38083 * 120.06897 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.46546 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47198 * 300.00302 * 1 2 3 26 26 H 1.09004 * 109.46660 * 60.00820 * 1 2 3 27 27 H 1.08995 * 109.47354 * 59.99752 * 3 2 1 28 28 H 1.09004 * 109.46792 * 299.99248 * 3 2 1 29 29 H 1.08994 * 109.47266 * 304.99822 * 4 3 2 30 30 H 1.09002 * 109.47150 * 184.99472 * 4 3 2 31 31 H 0.96998 * 119.99529 * 179.97438 * 9 8 6 32 32 H 1.08991 * 109.47690 * 149.99760 * 14 5 4 33 33 H 1.09002 * 109.47034 * 29.99716 * 14 5 4 34 34 H 1.08991 * 109.47328 * 59.99198 * 15 14 5 35 35 H 1.09002 * 109.46673 * 299.99597 * 15 14 5 36 36 H 1.07995 * 120.03692 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.97024 * 179.72477 * 19 18 17 38 38 H 1.08003 * 119.96265 * 180.02562 * 22 20 19 39 39 H 1.08004 * 120.03054 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0127 -0.8003 -1.3630 7 1 3.7916 -1.2703 -2.3098 8 6 4.3335 -1.5792 -0.2596 9 7 5.0513 -1.0699 0.7190 10 14 3.7466 -3.3499 -0.1639 11 1 4.2919 -4.1150 -1.3139 12 1 4.2191 -3.9601 1.1048 13 1 2.2626 -3.3825 -0.2067 14 6 4.3793 1.4028 -2.3824 15 6 3.1596 1.6985 -3.2576 16 16 3.6581 2.7377 -4.6583 17 6 2.1486 2.9683 -5.5376 18 6 0.9742 2.3935 -5.0674 19 6 -0.2061 2.5713 -5.7617 20 6 -0.2222 3.3307 -6.9188 21 17 -1.7095 3.5585 -7.7847 22 6 0.9448 3.9092 -7.3864 23 6 2.1293 3.7299 -6.6997 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8508 0.5687 0.8427 30 1 3.9784 2.1766 0.0901 31 1 5.2751 -1.6140 1.4902 32 1 5.1318 0.8800 -2.9726 33 1 4.7953 2.3392 -2.0107 34 1 2.4071 2.2213 -2.6674 35 1 2.7436 0.7621 -3.6294 36 1 0.9854 1.8042 -4.1624 37 1 -1.1183 2.1212 -5.3992 38 1 0.9290 4.5016 -8.2893 39 1 3.0396 4.1820 -7.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459532330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:57 Heat of formation + Delta-G solvation = -19.459799 kcal Electronic energy + Delta-G solvation = -21533.739154 eV Core-core repulsion = 18207.773999 eV Total energy + Delta-G solvation = -3325.965155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11182 -38.94693 -37.43488 -37.28529 -33.91592 -32.37076 -31.84102 -31.60048 -29.73504 -27.16633 -26.06834 -24.23919 -23.81214 -23.18667 -22.02043 -18.90520 -18.68766 -17.67332 -17.36318 -16.74704 -16.53467 -16.48318 -15.90240 -15.79954 -15.50161 -15.45906 -14.86851 -14.63226 -14.54038 -14.34865 -13.88351 -13.43155 -13.18041 -12.95978 -12.80727 -12.69375 -12.58928 -12.47359 -12.39196 -12.29992 -11.89852 -11.84990 -11.70070 -11.55898 -11.18910 -10.49980 -10.46131 -10.29838 -10.15349 -8.61047 -8.40097 -7.77482 -5.33855 -0.05406 0.21055 0.48310 1.11878 1.44668 1.47630 1.51970 1.58743 2.48023 2.58200 3.20222 3.35069 3.70996 3.71847 3.82896 3.98059 4.14802 4.19992 4.32029 4.38506 4.47839 4.51005 4.55895 4.68081 4.70895 4.80566 4.86702 4.87483 4.90564 4.96047 4.97292 5.15181 5.17511 5.21811 5.62948 5.71143 5.81257 6.43555 6.66012 7.21002 7.89372 8.36696 9.19605 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003318 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.805386 B = 8437.126843 C = 9072.395118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.056 3.944 4 C 0.133 3.867 5 N -0.582 5.582 6 C -0.246 4.246 7 H 0.049 0.951 8 C -0.018 4.018 9 N -0.915 5.915 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.283 1.283 14 C 0.164 3.836 15 C -0.101 4.101 16 S -0.117 6.117 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.093 4.093 20 C -0.052 4.052 21 Cl -0.067 7.067 22 C -0.088 4.088 23 C -0.094 4.094 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.249 0.751 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 11.614 -12.662 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.023 4.023 4 C 0.006 3.994 5 N -0.302 5.302 6 C -0.377 4.377 7 H 0.066 0.934 8 C -0.215 4.215 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.210 1.210 14 C 0.036 3.964 15 C -0.252 4.252 16 S 0.127 5.873 17 C -0.200 4.200 18 C -0.158 4.158 19 C -0.113 4.113 20 C -0.081 4.081 21 Cl -0.038 7.038 22 C -0.108 4.108 23 C -0.118 4.118 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.643 11.750 -12.712 19.815 hybrid contribution -1.928 -1.412 0.643 2.475 sum -11.571 10.338 -12.069 19.657 Atomic orbital electron populations 1.22808 0.81917 1.02386 1.00035 1.88185 1.19243 1.28561 1.95138 1.23264 0.96670 0.84047 0.98312 1.21125 0.90026 0.96544 0.91669 1.43840 1.74459 1.01923 1.09987 1.18868 1.39885 0.82369 0.96534 0.93371 1.25388 0.97377 1.00307 0.98421 1.70075 1.37424 1.37696 1.10794 0.85718 0.78581 0.81924 0.76421 1.20576 1.22256 1.20997 1.20547 0.92136 0.94796 0.88951 1.24478 1.04559 1.00014 0.96124 1.85343 1.10940 1.63606 1.27375 1.22086 0.96913 1.01494 0.99493 1.21268 0.91936 1.01479 1.01095 1.21101 0.98748 0.97779 0.93722 1.21018 0.88370 1.02857 0.95880 1.98366 1.33322 1.96062 1.76022 1.21231 0.89903 0.98989 1.00672 1.20971 0.99215 0.98415 0.93245 0.90372 0.93499 0.93879 0.93606 0.94273 0.90955 0.92354 0.94178 0.93496 0.92544 0.89982 0.91119 0.85540 0.83600 0.82051 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -16.68 9.97 -148.98 -1.49 -18.17 16 3 C 0.06 2.11 6.28 71.98 0.45 2.57 16 4 C 0.13 5.90 5.83 86.38 0.50 6.40 16 5 N -0.58 -27.36 2.45 -702.02 -1.72 -29.09 16 6 C -0.25 -13.18 8.75 84.03 0.74 -12.44 16 7 H 0.05 2.62 7.94 -2.91 -0.02 2.60 16 8 C -0.02 -0.97 4.95 84.86 0.42 -0.55 16 9 N -0.92 -52.82 11.37 21.65 0.25 -52.58 16 10 Si 0.94 45.64 29.62 68.60 2.03 47.67 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 13 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 14 C 0.16 6.39 5.72 86.38 0.49 6.89 16 15 C -0.10 -3.31 4.65 71.98 0.34 -2.98 16 16 S -0.12 -3.30 21.92 -56.49 -1.24 -4.53 16 17 C -0.09 -2.17 6.11 22.61 0.14 -2.03 16 18 C -0.13 -3.33 9.36 22.41 0.21 -3.12 16 19 C -0.09 -2.01 9.82 22.27 0.22 -1.79 16 20 C -0.05 -1.03 6.32 22.35 0.14 -0.88 16 21 Cl -0.07 -1.18 28.95 -2.72 -0.08 -1.26 16 22 C -0.09 -1.57 9.82 22.27 0.22 -1.35 16 23 C -0.09 -1.93 9.79 22.41 0.22 -1.71 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.36 6.46 -2.38 -0.02 1.35 16 29 H 0.07 3.83 5.38 -2.39 -0.01 3.82 16 30 H 0.06 2.33 7.84 -2.39 -0.02 2.31 16 31 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 33 H 0.06 2.06 7.86 -2.39 -0.02 2.04 16 34 H 0.08 2.62 6.05 -2.40 -0.01 2.61 16 35 H 0.07 2.54 7.76 -2.39 -0.02 2.52 16 36 H 0.13 3.34 5.88 -2.91 -0.02 3.32 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -60.92 352.28 4.13 -56.79 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.04 Total: 10.13 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.33 Total: -8.96 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.48 Total: -81.66 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.49 Total: -18.17 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.24 Total: -4.53 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -60.92 4.13 -56.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459532330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.328 kcal (2) G-P(sol) polarization free energy of solvation -60.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds