Wall clock time and date at job start Tue Mar 31 2020 10:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35993 * 117.00244 * 2 1 4 4 C 1.38568 * 120.07039 * 359.96985 * 3 2 1 5 5 C 1.38249 * 119.99438 * 179.75193 * 4 3 2 6 6 C 1.50700 * 119.92294 * 180.27526 * 5 4 3 7 7 C 1.38246 * 120.14629 * 0.54748 * 5 4 3 8 8 S 1.76208 * 119.92522 * 179.72602 * 7 5 4 9 9 O 1.42096 * 106.40320 * 177.90713 * 8 7 5 10 10 O 1.42105 * 106.39813 * 310.82406 * 8 7 5 11 11 N 1.65595 * 107.21901 * 64.36527 * 8 7 5 12 12 C 1.46500 * 119.99967 * 64.11200 * 11 8 7 13 13 C 1.50702 * 109.47093 * 165.03324 * 12 11 8 14 14 H 1.07999 * 120.00219 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99826 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99823 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99610 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47346 * 90.00154 * 17 15 13 19 19 H 1.48504 * 109.47155 * 209.99712 * 17 15 13 20 20 H 1.48492 * 109.47559 * 330.00078 * 17 15 13 21 21 C 1.38243 * 120.14923 * 359.45024 * 7 5 4 22 22 C 1.38561 * 119.99879 * 0.27727 * 21 7 5 23 23 O 1.35989 * 120.07399 * 179.97438 * 22 21 7 24 24 C 1.42896 * 117.00202 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47371 * 300.00897 * 1 2 3 26 26 H 1.09006 * 109.46864 * 60.00299 * 1 2 3 27 27 H 1.08995 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00541 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47145 * 264.71187 * 6 5 4 30 30 H 1.08993 * 109.47591 * 24.70819 * 6 5 4 31 31 H 1.08999 * 109.47021 * 144.71457 * 6 5 4 32 32 H 0.96996 * 120.00095 * 244.11532 * 11 8 7 33 33 H 1.09000 * 109.46969 * 285.03139 * 12 11 8 34 34 H 1.09000 * 109.47078 * 45.02987 * 12 11 8 35 35 H 0.97006 * 119.99970 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99960 * 180.24601 * 21 7 5 37 37 H 1.08996 * 109.47169 * 59.99894 * 24 23 22 38 38 H 1.09000 * 109.47561 * 180.02562 * 24 23 22 39 39 H 1.09008 * 109.47184 * 300.00204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0006 5 6 1.9225 3.6057 0.0046 6 6 1.1018 4.8696 0.0101 7 6 3.3030 3.6797 -0.0010 8 16 4.0990 5.2518 -0.0017 9 8 5.4958 4.9943 0.0419 10 8 3.4809 6.0140 -1.0294 11 7 3.7159 5.9958 1.4272 12 6 4.1648 5.4190 2.6968 13 6 4.0181 6.4424 3.7933 14 1 3.6298 7.4244 3.5670 15 6 4.3807 6.1253 5.0853 16 7 4.8541 4.9297 5.3607 17 14 4.1996 7.3941 6.4441 18 1 2.8523 7.2742 7.0570 19 1 5.2373 7.1610 7.4806 20 1 4.3651 8.7558 5.8754 21 6 4.0603 2.5232 -0.0004 22 6 3.4360 1.2863 0.0001 23 8 4.1795 0.1476 0.0002 24 6 5.6003 0.3005 -0.0007 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.2146 2.3197 -0.0007 29 1 0.9831 5.2303 -1.0116 30 1 0.1210 4.6641 0.4389 31 1 1.6075 5.6286 0.6069 32 1 3.1942 6.8135 1.4236 33 1 3.5588 4.5442 2.9329 34 1 5.2108 5.1243 2.6123 35 1 5.1096 4.7067 6.2696 36 1 5.1387 2.5839 -0.0008 37 1 5.9071 0.8507 0.8887 38 1 6.0715 -0.6823 -0.0010 39 1 5.9060 0.8499 -0.8912 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487356597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:15 Heat of formation + Delta-G solvation = -122.983687 kcal Electronic energy + Delta-G solvation = -24978.282144 eV Core-core repulsion = 21207.118692 eV Total energy + Delta-G solvation = -3771.163452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64608 -38.53006 -37.37466 -36.68508 -35.33466 -34.69128 -32.29146 -31.87367 -30.60964 -28.23568 -27.33803 -26.75556 -25.93155 -22.65122 -22.51132 -21.66768 -19.24804 -18.39483 -17.60071 -17.25815 -17.03969 -16.19108 -15.96205 -15.71351 -15.33418 -15.29376 -14.61766 -14.56845 -14.49286 -13.78647 -13.51286 -13.44646 -13.04472 -12.60475 -12.41994 -12.37231 -12.13184 -12.00515 -11.78844 -11.68093 -11.51134 -11.42237 -11.31131 -11.29305 -10.96604 -10.88823 -10.75054 -10.48360 -10.12806 -9.43859 -8.94194 -8.84092 -8.24066 -7.91493 -6.18553 -4.23455 0.83362 1.08305 1.29826 3.06017 3.24172 3.25323 3.30968 3.33726 3.38406 3.74088 4.23852 4.33704 4.56107 4.74086 4.90610 4.95038 4.98873 5.10499 5.12669 5.18460 5.26483 5.31050 5.39241 5.48301 5.56181 5.58088 5.71869 5.73064 5.96853 6.13583 6.27722 6.44192 6.58446 6.92365 7.28541 7.33506 7.47751 7.77340 7.78999 8.15986 8.80704 9.41515 10.91775 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.004580 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.299846 B = 6111.560214 C = 6439.176748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.153 3.847 4 C -0.200 4.200 5 C 0.030 3.970 6 C -0.143 4.143 7 C -0.669 4.669 8 S 2.695 3.305 9 O -0.966 6.966 10 O -0.976 6.976 11 N -1.103 6.103 12 C 0.247 3.753 13 C -0.529 4.529 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.069 4.069 22 C 0.073 3.927 23 O -0.308 6.308 24 C 0.020 3.980 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.142 0.858 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.410 0.590 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.155 0.845 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 -8.184 -10.869 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.106 3.894 4 C -0.219 4.219 5 C 0.029 3.971 6 C -0.200 4.200 7 C -0.754 4.754 8 S 2.783 3.217 9 O -0.956 6.956 10 O -0.966 6.966 11 N -0.866 5.866 12 C 0.124 3.876 13 C -0.569 4.569 14 H 0.084 0.916 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.089 4.089 22 C 0.027 3.973 23 O -0.222 6.222 24 C -0.075 4.075 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.172 0.828 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.795 -8.572 -11.370 15.778 hybrid contribution -0.752 0.483 1.249 1.536 sum -7.548 -8.089 -10.121 14.995 Atomic orbital electron populations 1.23134 0.78313 1.04123 1.01609 1.86191 1.21335 1.25915 1.88091 1.18416 0.89226 0.85088 0.96676 1.20989 1.00016 0.90859 1.10040 1.19206 0.91481 0.95363 0.91097 1.21246 1.00212 0.94190 1.04312 1.30700 1.04070 1.21631 1.19022 1.01748 0.73789 0.73279 0.72917 1.93533 1.29803 1.85613 1.86694 1.93541 1.78000 1.69135 1.55968 1.55486 1.70939 1.37390 1.22780 1.19077 0.95397 0.94454 0.78653 1.21188 1.44331 0.99170 0.92220 0.91562 1.24971 0.94779 0.95689 0.98735 1.69941 1.42453 1.19727 1.20646 0.86417 0.77849 0.81437 0.81239 1.20542 1.21045 1.19673 1.20827 1.00772 0.89741 0.97564 1.18164 0.88289 0.86239 1.04646 1.86125 1.18885 1.27720 1.89421 1.23164 0.78313 1.03994 1.02045 0.92276 0.92481 0.88054 0.84055 0.88737 0.90271 0.90256 0.75493 0.95988 0.94418 0.92464 0.82780 0.91889 0.88054 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.19 10.28 -34.22 -0.35 -4.55 16 3 C 0.15 2.35 6.70 -39.12 -0.26 2.09 16 4 C -0.20 -2.80 8.67 -39.46 -0.34 -3.14 16 5 C 0.03 0.47 5.87 -104.61 -0.61 -0.14 16 6 C -0.14 -1.93 8.61 36.01 0.31 -1.62 16 7 C -0.67 -11.78 5.86 -39.58 -0.23 -12.01 16 8 S 2.69 51.23 4.94 -107.50 -0.53 50.70 16 9 O -0.97 -20.89 16.46 -57.17 -0.94 -21.83 16 10 O -0.98 -18.70 16.51 -57.17 -0.94 -19.64 16 11 N -1.10 -22.05 4.75 -11.65 -0.06 -22.11 16 12 C 0.25 6.08 5.97 -5.19 -0.03 6.05 16 13 C -0.53 -13.99 9.27 -34.44 -0.32 -14.31 16 14 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 17 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.07 -1.19 8.54 -39.46 -0.34 -1.52 16 22 C 0.07 1.21 6.70 -39.12 -0.26 0.94 16 23 O -0.31 -4.77 10.28 -34.21 -0.35 -5.13 16 24 C 0.02 0.24 9.81 101.05 0.99 1.23 16 25 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 29 H 0.09 1.18 8.01 -51.93 -0.42 0.77 16 30 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.08 1.14 5.39 -51.93 -0.28 0.86 16 32 H 0.41 7.32 8.15 -34.47 -0.28 7.03 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.15 2.50 5.57 -52.48 -0.29 2.20 16 37 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.61 7.66 -51.92 -0.40 0.21 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -33.74 338.92 -7.37 -41.12 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.82 Total: 5.00 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -0.20 Total: -19.67 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.68 Total: -46.69 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -2.59 Total: -51.14 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 51.23 SS G_CDS: -0.53 Total: 50.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.74 -7.37 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.867 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds