Wall clock time and date at job start Tue Mar 31 2020 10:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35993 * 117.00244 * 2 1 4 4 C 1.38568 * 120.07039 * 359.96985 * 3 2 1 5 5 C 1.38249 * 119.99438 * 179.75193 * 4 3 2 6 6 C 1.50700 * 119.92294 * 180.27526 * 5 4 3 7 7 C 1.38246 * 120.14629 * 0.54748 * 5 4 3 8 8 S 1.76208 * 119.92522 * 179.72602 * 7 5 4 9 9 O 1.42096 * 106.40320 * 177.90713 * 8 7 5 10 10 O 1.42105 * 106.39813 * 310.82406 * 8 7 5 11 11 N 1.65595 * 107.21901 * 64.36527 * 8 7 5 12 12 C 1.46500 * 119.99967 * 64.11200 * 11 8 7 13 13 C 1.50702 * 109.47093 * 165.03324 * 12 11 8 14 14 H 1.07999 * 120.00219 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99826 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99823 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99610 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47346 * 90.00154 * 17 15 13 19 19 H 1.48504 * 109.47155 * 209.99712 * 17 15 13 20 20 H 1.48492 * 109.47559 * 330.00078 * 17 15 13 21 21 C 1.38243 * 120.14923 * 359.45024 * 7 5 4 22 22 C 1.38561 * 119.99879 * 0.27727 * 21 7 5 23 23 O 1.35989 * 120.07399 * 179.97438 * 22 21 7 24 24 C 1.42896 * 117.00202 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47371 * 300.00897 * 1 2 3 26 26 H 1.09006 * 109.46864 * 60.00299 * 1 2 3 27 27 H 1.08995 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00541 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47145 * 264.71187 * 6 5 4 30 30 H 1.08993 * 109.47591 * 24.70819 * 6 5 4 31 31 H 1.08999 * 109.47021 * 144.71457 * 6 5 4 32 32 H 0.96996 * 120.00095 * 244.11532 * 11 8 7 33 33 H 1.09000 * 109.46969 * 285.03139 * 12 11 8 34 34 H 1.09000 * 109.47078 * 45.02987 * 12 11 8 35 35 H 0.97006 * 119.99970 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.99960 * 180.24601 * 21 7 5 37 37 H 1.08996 * 109.47169 * 59.99894 * 24 23 22 38 38 H 1.09000 * 109.47561 * 180.02562 * 24 23 22 39 39 H 1.09008 * 109.47184 * 300.00204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0006 5 6 1.9225 3.6057 0.0046 6 6 1.1018 4.8696 0.0101 7 6 3.3030 3.6797 -0.0010 8 16 4.0990 5.2518 -0.0017 9 8 5.4958 4.9943 0.0419 10 8 3.4809 6.0140 -1.0294 11 7 3.7159 5.9958 1.4272 12 6 4.1648 5.4190 2.6968 13 6 4.0181 6.4424 3.7933 14 1 3.6298 7.4244 3.5670 15 6 4.3807 6.1253 5.0853 16 7 4.8541 4.9297 5.3607 17 14 4.1996 7.3941 6.4441 18 1 2.8523 7.2742 7.0570 19 1 5.2373 7.1610 7.4806 20 1 4.3651 8.7558 5.8754 21 6 4.0603 2.5232 -0.0004 22 6 3.4360 1.2863 0.0001 23 8 4.1795 0.1476 0.0002 24 6 5.6003 0.3005 -0.0007 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.2146 2.3197 -0.0007 29 1 0.9831 5.2303 -1.0116 30 1 0.1210 4.6641 0.4389 31 1 1.6075 5.6286 0.6069 32 1 3.1942 6.8135 1.4236 33 1 3.5588 4.5442 2.9329 34 1 5.2108 5.1243 2.6123 35 1 5.1096 4.7067 6.2696 36 1 5.1387 2.5839 -0.0008 37 1 5.9071 0.8507 0.8887 38 1 6.0715 -0.6823 -0.0010 39 1 5.9060 0.8499 -0.8912 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487356597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:14 Heat of formation + Delta-G solvation = -148.070579 kcal Electronic energy + Delta-G solvation = -24979.369993 eV Core-core repulsion = 21207.118692 eV Total energy + Delta-G solvation = -3772.251301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76891 -39.58993 -38.57890 -38.20923 -36.94080 -36.52600 -34.18490 -33.09658 -31.77274 -29.21802 -28.71403 -28.18314 -27.06408 -24.50192 -23.77884 -22.82974 -20.70514 -19.72117 -19.15158 -18.57966 -18.27137 -17.70802 -17.19013 -17.13461 -16.97457 -16.31974 -16.26244 -15.75237 -15.48589 -15.28135 -14.85958 -14.60526 -14.45475 -14.15475 -14.07444 -13.60841 -13.37550 -13.32740 -13.22834 -13.14494 -12.88486 -12.74891 -12.67926 -12.52275 -12.27605 -12.20299 -12.10385 -12.00014 -11.83682 -11.40758 -10.83729 -10.13423 -9.99557 -9.10166 -8.24024 -6.36525 -0.58635 -0.27176 0.10812 1.45740 1.47125 1.58092 2.01597 2.09602 2.19816 2.30518 2.43705 2.74239 3.11311 3.37535 3.55344 3.68194 3.98617 4.01764 4.26157 4.29231 4.30909 4.37924 4.38557 4.48013 4.57469 4.61950 4.67691 4.70522 4.74226 4.77769 5.07943 5.14114 5.28197 5.29907 5.44171 5.74749 5.90467 5.96976 6.31857 6.37620 6.78215 7.33437 8.87269 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.004580 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.299846 B = 6111.560214 C = 6439.176748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.152 3.848 4 C -0.193 4.193 5 C 0.024 3.976 6 C -0.149 4.149 7 C -0.689 4.689 8 S 2.710 3.290 9 O -1.000 7.000 10 O -0.977 6.977 11 N -1.099 6.099 12 C 0.262 3.738 13 C -0.546 4.546 14 H 0.078 0.922 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.087 4.087 22 C 0.055 3.945 23 O -0.320 6.320 24 C 0.012 3.988 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.182 0.818 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.420 0.580 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.151 0.849 37 H 0.052 0.948 38 H 0.132 0.868 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -8.094 -10.872 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.105 3.895 4 C -0.212 4.212 5 C 0.022 3.978 6 C -0.205 4.205 7 C -0.777 4.777 8 S 2.801 3.199 9 O -0.990 6.990 10 O -0.967 6.967 11 N -0.861 5.861 12 C 0.138 3.862 13 C -0.586 4.586 14 H 0.096 0.904 15 C -0.192 4.192 16 N -0.567 5.567 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.107 4.107 22 C 0.009 3.991 23 O -0.234 6.234 24 C -0.083 4.083 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.199 0.801 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.257 0.743 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.168 0.832 37 H 0.071 0.929 38 H 0.150 0.850 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.104 -8.436 -11.393 16.848 hybrid contribution -0.109 0.308 1.167 1.212 sum -9.213 -8.129 -10.226 15.986 Atomic orbital electron populations 1.23551 0.75554 1.06298 1.03004 1.86185 1.24187 1.25174 1.87544 1.18651 0.89098 0.86261 0.95501 1.21377 1.01887 0.89519 1.08460 1.19589 0.90836 0.97126 0.90207 1.21388 1.01303 0.92765 1.05041 1.30368 1.05263 1.20196 1.21922 1.01052 0.72999 0.73545 0.72292 1.93484 1.32302 1.86232 1.86970 1.93528 1.77834 1.69810 1.55533 1.55252 1.71043 1.38213 1.21616 1.18617 0.93412 0.94020 0.80180 1.21619 1.44093 0.99940 0.92909 0.90377 1.25908 0.94293 0.97639 1.01373 1.70074 1.43544 1.21789 1.21311 0.85317 0.78013 0.78995 0.77891 1.19492 1.21090 1.18650 1.20870 1.00862 0.90303 0.98700 1.18402 0.89378 0.86183 1.05123 1.86101 1.20358 1.27532 1.89399 1.23423 0.76937 1.05914 1.01991 0.91237 0.90567 0.85718 0.80071 0.87667 0.87018 0.91519 0.74347 0.97324 0.97474 0.92335 0.83164 0.92896 0.84992 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -8.20 10.28 -79.61 -0.82 -9.02 16 3 C 0.15 4.50 6.70 22.57 0.15 4.65 16 4 C -0.19 -4.98 8.67 22.35 0.19 -4.78 16 5 C 0.02 0.73 5.87 -19.86 -0.12 0.61 16 6 C -0.15 -3.68 8.61 71.24 0.61 -3.06 16 7 C -0.69 -24.57 5.86 22.27 0.13 -24.44 16 8 S 2.71 105.29 4.94 -56.49 -0.28 105.01 16 9 O -1.00 -45.14 16.46 -128.00 -2.11 -47.25 16 10 O -0.98 -37.25 16.51 -128.00 -2.11 -39.36 16 11 N -1.10 -44.64 4.75 -190.79 -0.91 -45.55 16 12 C 0.26 13.27 5.97 85.63 0.51 13.78 16 13 C -0.55 -28.98 9.27 25.60 0.24 -28.75 16 14 H 0.08 3.85 7.65 -2.91 -0.02 3.83 16 15 C 0.01 0.42 5.46 84.66 0.46 0.88 16 16 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 17 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 21 C -0.09 -3.10 8.54 22.35 0.19 -2.91 16 22 C 0.06 1.85 6.70 22.57 0.15 2.01 16 23 O -0.32 -10.00 10.28 -79.56 -0.82 -10.82 16 24 C 0.01 0.28 9.81 113.37 1.11 1.39 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.08 0.82 7.66 -2.38 -0.02 0.80 16 27 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.18 3.03 6.30 -2.91 -0.02 3.01 16 29 H 0.10 2.38 8.01 -2.39 -0.02 2.36 16 30 H 0.11 1.99 8.05 -2.39 -0.02 1.97 16 31 H 0.07 1.83 5.39 -2.39 -0.01 1.81 16 32 H 0.42 14.96 8.15 -96.75 -0.79 14.17 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.01 0.41 7.77 -2.39 -0.02 0.39 16 35 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.15 5.23 5.57 -2.91 -0.02 5.21 16 37 H 0.05 1.37 7.66 -2.39 -0.02 1.35 16 38 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 1.43 7.66 -2.38 -0.02 1.42 16 Total: -1.00 -73.30 338.92 0.32 -72.97 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.30 Total: 22.85 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.75 Total: -39.37 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -0.62 Total: -98.94 kcal Atomic # 8 Polarization: -100.59 SS G_CDS: -5.86 Total: -106.45 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 105.29 SS G_CDS: -0.28 Total: 105.01 kcal Total: -73.30 0.32 -72.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487356597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.097 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds