Wall clock time and date at job start Tue Mar 31 2020 11:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38565 * 120.07439 * 359.72507 * 3 2 1 5 5 C 1.38248 * 119.99552 * 179.74455 * 4 3 2 6 6 C 1.50700 * 119.92374 * 180.25225 * 5 4 3 7 7 N 1.46496 * 109.47351 * 270.25628 * 6 5 4 8 8 C 1.46497 * 120.00071 * 275.00219 * 7 6 5 9 9 S 1.65599 * 120.00287 * 95.00261 * 7 6 5 10 10 O 1.42098 * 104.28169 * 206.07151 * 9 7 6 11 11 O 1.42109 * 104.27294 * 333.92781 * 9 7 6 12 12 C 1.81397 * 104.45190 * 89.99779 * 9 7 6 13 13 C 1.50697 * 109.47455 * 180.02562 * 12 9 7 14 14 H 1.08005 * 119.99959 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00461 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00164 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47146 * 89.99650 * 17 15 13 19 19 H 1.48499 * 109.47100 * 209.99903 * 17 15 13 20 20 H 1.48502 * 109.47249 * 330.00174 * 17 15 13 21 21 C 1.38246 * 120.14817 * 0.50974 * 5 4 3 22 22 C 1.38242 * 120.14884 * 359.76851 * 21 5 4 23 23 C 1.38565 * 119.99815 * 359.97438 * 22 21 5 24 24 O 1.35996 * 120.07637 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 26 26 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99980 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47412 * 30.25759 * 6 5 4 30 30 H 1.09000 * 109.47112 * 150.25577 * 6 5 4 31 31 H 1.08994 * 109.47540 * 90.00223 * 8 7 6 32 32 H 1.09004 * 109.47324 * 210.00557 * 8 7 6 33 33 H 1.09000 * 109.47177 * 329.99535 * 8 7 6 34 34 H 1.09003 * 109.47413 * 300.00522 * 12 9 7 35 35 H 1.08992 * 109.47210 * 60.00095 * 12 9 7 36 36 H 0.96995 * 119.99842 * 180.02562 * 16 15 13 37 37 H 1.08004 * 119.92680 * 179.74146 * 21 5 4 38 38 H 1.07997 * 120.00411 * 179.97438 * 22 21 5 39 39 H 0.96704 * 113.99800 * 270.02241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0058 5 6 1.9223 3.6058 -0.0004 6 6 1.1015 4.8696 -0.0009 7 7 0.8360 5.2789 -1.3823 8 6 1.8199 6.0845 -2.1095 9 16 -0.5765 4.8311 -2.1217 10 8 -0.2597 4.8230 -3.5069 11 8 -0.9602 3.6384 -1.4509 12 6 -1.7330 6.1757 -1.7409 13 6 -3.0714 5.8796 -2.3669 14 1 -3.2124 4.9728 -2.9365 15 6 -4.1161 6.7661 -2.2126 16 7 -5.2842 6.5074 -2.7584 17 14 -3.8724 8.3340 -1.2268 18 1 -3.4112 9.4194 -2.1293 19 1 -5.1582 8.7272 -0.5965 20 1 -2.8541 8.1019 -0.1712 21 6 3.3028 3.6799 0.0000 22 6 4.0602 2.5235 0.0000 23 6 3.4359 1.2864 0.0000 24 8 4.1795 0.1478 -0.0006 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2146 2.3196 -0.0107 29 1 0.1570 4.6897 0.5126 30 1 1.6498 5.6592 0.5130 31 1 2.5146 5.4261 -2.6309 32 1 1.3072 6.7182 -2.8333 33 1 2.3700 6.7090 -1.4055 34 1 -1.8484 6.2607 -0.6604 35 1 -1.3445 7.1128 -2.1395 36 1 -6.0189 7.1313 -2.6501 37 1 3.7906 4.6435 0.0000 38 1 5.1385 2.5841 -0.0001 39 1 4.3944 -0.1812 -0.8842 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565236260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:18 Heat of formation + Delta-G solvation = -121.920207 kcal Electronic energy + Delta-G solvation = -24822.686018 eV Core-core repulsion = 21051.568682 eV Total energy + Delta-G solvation = -3771.117336 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40594 -37.89215 -37.35576 -36.36289 -35.38979 -35.08511 -33.30787 -30.82728 -30.08003 -29.83819 -27.64682 -26.70102 -24.45066 -23.01547 -22.29679 -21.58769 -18.68472 -18.38227 -17.70170 -17.31279 -16.68133 -16.26533 -15.99018 -15.81773 -15.70336 -15.14762 -14.60007 -14.36778 -14.21050 -14.05337 -13.90829 -13.27544 -12.79504 -12.74792 -12.56349 -12.44134 -12.21940 -12.06543 -11.74540 -11.68504 -11.33113 -11.29196 -11.20039 -11.06981 -10.92068 -10.91488 -10.57102 -10.38501 -9.98066 -9.61744 -8.90231 -8.88263 -8.68028 -8.10373 -6.37628 -4.47176 0.93493 1.23245 1.38493 3.09371 3.16518 3.18276 3.24375 3.28935 3.66748 4.16038 4.18538 4.58836 4.71098 4.75939 4.78004 4.95575 5.00835 5.20954 5.22249 5.29701 5.34756 5.48347 5.52908 5.62656 5.68015 5.69868 5.85945 5.90171 5.97765 6.15972 6.18885 6.24921 6.28008 6.57870 6.67168 6.82540 7.13237 7.20666 7.69209 7.94072 8.53576 9.17474 10.73412 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.004041 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.041897 B = 6926.899024 C = 7560.186672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.312 6.312 3 C 0.099 3.901 4 C -0.171 4.171 5 C -0.074 4.074 6 C 0.165 3.835 7 N -1.010 6.010 8 C 0.097 3.903 9 S 2.602 3.398 10 O -0.968 6.968 11 O -0.969 6.969 12 C -0.472 4.472 13 C -0.535 4.535 14 H 0.085 0.915 15 C 0.089 3.911 16 N -0.879 5.879 17 Si 0.884 3.116 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.127 4.127 22 C -0.115 4.115 23 C 0.069 3.931 24 O -0.489 6.489 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.272 0.728 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.799 -4.142 7.053 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.225 6.225 3 C 0.053 3.947 4 C -0.190 4.190 5 C -0.076 4.076 6 C 0.039 3.961 7 N -0.845 5.845 8 C -0.048 4.048 9 S 2.701 3.299 10 O -0.959 6.959 11 O -0.959 6.959 12 C -0.607 4.607 13 C -0.574 4.574 14 H 0.103 0.897 15 C -0.118 4.118 16 N -0.515 5.515 17 Si 0.709 3.291 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.146 4.146 22 C -0.133 4.133 23 C 0.023 3.977 24 O -0.298 6.298 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.174 0.826 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 16.558 -5.004 7.127 18.708 hybrid contribution -0.314 1.509 0.179 1.552 sum 16.244 -3.495 7.306 18.151 Atomic orbital electron populations 1.23173 0.77783 1.03815 1.02611 1.86086 1.21775 1.26109 1.88577 1.19497 0.91627 0.85228 0.98332 1.21603 1.02104 0.90957 1.04324 1.20142 0.94039 0.95109 0.98346 1.20137 1.00041 0.93024 0.82877 1.57893 1.35595 1.68224 1.22766 1.21383 0.92681 0.94578 0.96175 1.05396 0.73447 0.77288 0.73765 1.93496 1.82675 1.87621 1.32062 1.93428 1.82643 1.44172 1.75660 1.28265 1.12055 1.13618 1.06728 1.20071 0.91472 1.09910 1.35910 0.89711 1.24900 0.94455 0.98013 0.94439 1.69864 1.02044 1.36929 1.42643 0.86710 0.78309 0.83194 0.80841 1.19587 1.20587 1.18757 1.20804 0.92906 0.98019 1.02911 1.21140 1.00218 0.90880 1.01110 1.17769 0.86193 0.86533 1.07157 1.84868 1.71831 1.39988 1.33144 0.91462 0.92394 0.88329 0.82598 0.88979 0.89501 0.92893 0.90964 0.91505 0.89828 0.90312 0.91799 0.85559 0.84964 0.76165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.59 10.28 -34.23 -0.35 -4.95 16 3 C 0.10 1.48 6.70 -39.12 -0.26 1.22 16 4 C -0.17 -2.59 8.11 -39.46 -0.32 -2.91 16 5 C -0.07 -1.00 5.46 -104.62 -0.57 -1.57 16 6 C 0.16 2.09 5.43 -5.20 -0.03 2.06 16 7 N -1.01 -14.99 3.10 -123.06 -0.38 -15.37 16 8 C 0.10 1.18 10.24 59.85 0.61 1.79 16 9 S 2.60 51.70 5.24 -107.50 -0.56 51.13 16 10 O -0.97 -22.07 17.09 -57.54 -0.98 -23.06 16 11 O -0.97 -20.37 14.79 -57.54 -0.85 -21.22 16 12 C -0.47 -10.23 5.00 36.00 0.18 -10.05 16 13 C -0.53 -14.61 9.68 -34.44 -0.33 -14.94 16 14 H 0.08 2.51 7.96 -52.48 -0.42 2.09 16 15 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.88 -25.69 13.96 55.43 0.77 -24.92 16 17 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 21 C -0.13 -1.45 9.69 -39.58 -0.38 -1.84 16 22 C -0.11 -1.32 9.98 -39.46 -0.39 -1.71 16 23 C 0.07 0.92 6.72 -39.12 -0.26 0.66 16 24 O -0.49 -5.95 13.29 -34.23 -0.45 -6.41 16 25 H 0.07 0.91 7.65 -51.93 -0.40 0.52 16 26 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.16 2.52 4.69 -52.49 -0.25 2.27 16 29 H 0.09 1.16 7.55 -51.93 -0.39 0.77 16 30 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 33 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 34 H 0.08 1.66 7.20 -51.92 -0.37 1.29 16 35 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.38 2.97 9.06 45.56 0.41 3.38 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -35.10 341.97 -7.49 -42.59 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.29 Total: 5.43 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -0.87 Total: -23.69 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.39 Total: -40.29 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -2.64 Total: -55.63 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.56 Total: 51.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.10 -7.49 -42.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565236260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.333 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds