Wall clock time and date at job start Tue Mar 31 2020 11:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38565 * 120.07439 * 359.72507 * 3 2 1 5 5 C 1.38248 * 119.99552 * 179.74455 * 4 3 2 6 6 C 1.50700 * 119.92374 * 180.25225 * 5 4 3 7 7 N 1.46496 * 109.47351 * 270.25628 * 6 5 4 8 8 C 1.46497 * 120.00071 * 275.00219 * 7 6 5 9 9 S 1.65599 * 120.00287 * 95.00261 * 7 6 5 10 10 O 1.42098 * 104.28169 * 206.07151 * 9 7 6 11 11 O 1.42109 * 104.27294 * 333.92781 * 9 7 6 12 12 C 1.81397 * 104.45190 * 89.99779 * 9 7 6 13 13 C 1.50697 * 109.47455 * 180.02562 * 12 9 7 14 14 H 1.08005 * 119.99959 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00461 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00164 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47146 * 89.99650 * 17 15 13 19 19 H 1.48499 * 109.47100 * 209.99903 * 17 15 13 20 20 H 1.48502 * 109.47249 * 330.00174 * 17 15 13 21 21 C 1.38246 * 120.14817 * 0.50974 * 5 4 3 22 22 C 1.38242 * 120.14884 * 359.76851 * 21 5 4 23 23 C 1.38565 * 119.99815 * 359.97438 * 22 21 5 24 24 O 1.35996 * 120.07637 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 26 26 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99980 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47412 * 30.25759 * 6 5 4 30 30 H 1.09000 * 109.47112 * 150.25577 * 6 5 4 31 31 H 1.08994 * 109.47540 * 90.00223 * 8 7 6 32 32 H 1.09004 * 109.47324 * 210.00557 * 8 7 6 33 33 H 1.09000 * 109.47177 * 329.99535 * 8 7 6 34 34 H 1.09003 * 109.47413 * 300.00522 * 12 9 7 35 35 H 1.08992 * 109.47210 * 60.00095 * 12 9 7 36 36 H 0.96995 * 119.99842 * 180.02562 * 16 15 13 37 37 H 1.08004 * 119.92680 * 179.74146 * 21 5 4 38 38 H 1.07997 * 120.00411 * 179.97438 * 22 21 5 39 39 H 0.96704 * 113.99800 * 270.02241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0058 5 6 1.9223 3.6058 -0.0004 6 6 1.1015 4.8696 -0.0009 7 7 0.8360 5.2789 -1.3823 8 6 1.8199 6.0845 -2.1095 9 16 -0.5765 4.8311 -2.1217 10 8 -0.2597 4.8230 -3.5069 11 8 -0.9602 3.6384 -1.4509 12 6 -1.7330 6.1757 -1.7409 13 6 -3.0714 5.8796 -2.3669 14 1 -3.2124 4.9728 -2.9365 15 6 -4.1161 6.7661 -2.2126 16 7 -5.2842 6.5074 -2.7584 17 14 -3.8724 8.3340 -1.2268 18 1 -3.4112 9.4194 -2.1293 19 1 -5.1582 8.7272 -0.5965 20 1 -2.8541 8.1019 -0.1712 21 6 3.3028 3.6799 0.0000 22 6 4.0602 2.5235 0.0000 23 6 3.4359 1.2864 0.0000 24 8 4.1795 0.1478 -0.0006 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2146 2.3196 -0.0107 29 1 0.1570 4.6897 0.5126 30 1 1.6498 5.6592 0.5130 31 1 2.5146 5.4261 -2.6309 32 1 1.3072 6.7182 -2.8333 33 1 2.3700 6.7090 -1.4055 34 1 -1.8484 6.2607 -0.6604 35 1 -1.3445 7.1128 -2.1395 36 1 -6.0189 7.1313 -2.6501 37 1 3.7906 4.6435 0.0000 38 1 5.1385 2.5841 -0.0001 39 1 4.3944 -0.1812 -0.8842 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565236260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:18 Heat of formation + Delta-G solvation = -150.132409 kcal Electronic energy + Delta-G solvation = -24823.909391 eV Core-core repulsion = 21051.568682 eV Total energy + Delta-G solvation = -3772.340709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38700 -38.90670 -38.35770 -37.98859 -36.83583 -36.33912 -35.32772 -31.84300 -31.70503 -31.06230 -28.65120 -27.67458 -25.61335 -24.87373 -23.25849 -22.59475 -19.86792 -19.61756 -19.46571 -18.48331 -18.03488 -17.49042 -17.43551 -17.06540 -16.90960 -16.19164 -16.08694 -15.62847 -15.55590 -15.05252 -14.93677 -14.68458 -14.29204 -14.17250 -13.91777 -13.54906 -13.40601 -13.21527 -13.10593 -13.01651 -12.96618 -12.63232 -12.49317 -12.29028 -12.25939 -12.15261 -11.95039 -11.86033 -11.53142 -11.30110 -10.93859 -10.00811 -9.72758 -9.09637 -8.45089 -6.62190 -0.55780 0.18921 0.41491 1.34011 1.37045 1.48459 1.96130 2.27890 2.29907 2.65920 2.86898 3.03153 3.28282 3.38817 3.74604 3.83344 4.00612 4.21272 4.30090 4.31676 4.38219 4.43888 4.51891 4.57684 4.65062 4.71665 4.73020 4.79967 4.96192 5.04359 5.06381 5.22174 5.23549 5.32774 5.59033 5.70309 5.80732 5.81818 6.23352 6.42710 6.85815 7.06809 8.70297 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.004041 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.041897 B = 6926.899024 C = 7560.186672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C 0.070 3.930 4 C -0.193 4.193 5 C -0.088 4.088 6 C 0.157 3.843 7 N -0.998 5.998 8 C 0.085 3.915 9 S 2.618 3.382 10 O -1.005 7.005 11 O -0.990 6.990 12 C -0.483 4.483 13 C -0.557 4.557 14 H 0.035 0.965 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.953 3.047 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.227 1.227 21 C -0.115 4.115 22 C -0.110 4.110 23 C 0.061 3.939 24 O -0.499 6.499 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.276 0.724 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.187 -1.662 9.083 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.241 6.241 3 C 0.024 3.976 4 C -0.213 4.213 5 C -0.090 4.090 6 C 0.033 3.967 7 N -0.836 5.836 8 C -0.059 4.059 9 S 2.716 3.284 10 O -0.995 6.995 11 O -0.980 6.980 12 C -0.616 4.616 13 C -0.595 4.595 14 H 0.053 0.947 15 C -0.179 4.179 16 N -0.572 5.572 17 Si 0.773 3.227 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.150 1.150 21 C -0.133 4.133 22 C -0.128 4.128 23 C 0.015 3.985 24 O -0.311 6.311 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 19.954 -2.540 9.140 22.094 hybrid contribution -1.279 0.609 -0.490 1.499 sum 18.675 -1.931 8.650 20.671 Atomic orbital electron populations 1.23248 0.77197 1.05221 1.01664 1.86045 1.22482 1.26610 1.88930 1.19834 0.92651 0.85144 0.99945 1.21605 1.01334 0.92323 1.05995 1.20338 0.95289 0.94527 0.98837 1.20492 1.00555 0.94208 0.81493 1.57443 1.33844 1.68491 1.23826 1.21736 0.92123 0.94794 0.97285 1.04583 0.74213 0.76572 0.73035 1.93441 1.83485 1.87923 1.34696 1.93408 1.83671 1.45120 1.75785 1.28308 1.09751 1.15770 1.07755 1.20358 0.94779 1.08465 1.35911 0.94663 1.26079 0.93749 1.02394 0.95642 1.70026 1.03430 1.38901 1.44838 0.85620 0.79318 0.77729 0.80028 1.18135 1.20434 1.14986 1.21211 0.91857 0.99675 1.00569 1.21520 1.01787 0.89958 0.99579 1.18066 0.85744 0.87718 1.06953 1.84808 1.71425 1.39955 1.34885 0.93590 0.92188 0.85718 0.84743 0.89622 0.84612 0.92778 0.91543 0.86697 0.87313 0.87816 0.91482 0.81671 0.81915 0.74092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.33 -9.94 10.28 -79.63 -0.82 -10.76 16 3 C 0.07 2.10 6.70 22.57 0.15 2.25 16 4 C -0.19 -5.88 8.11 22.35 0.18 -5.70 16 5 C -0.09 -2.15 5.46 -19.86 -0.11 -2.26 16 6 C 0.16 3.42 5.43 85.63 0.47 3.89 16 7 N -1.00 -26.81 3.10 -543.25 -1.68 -28.49 16 8 C 0.08 1.71 10.24 127.77 1.31 3.02 16 9 S 2.62 104.08 5.24 -56.49 -0.30 103.78 16 10 O -1.01 -46.76 17.09 -127.65 -2.18 -48.94 16 11 O -0.99 -43.13 14.79 -127.65 -1.89 -45.02 16 12 C -0.48 -20.41 5.00 71.24 0.36 -20.05 16 13 C -0.56 -31.37 9.68 25.60 0.25 -31.12 16 14 H 0.04 2.25 7.96 -2.91 -0.02 2.22 16 15 C 0.02 1.27 5.47 84.66 0.46 1.73 16 16 N -0.93 -56.76 13.96 21.45 0.30 -56.46 16 17 Si 0.95 39.87 27.47 68.60 1.88 41.76 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.23 -8.14 6.54 99.48 0.65 -7.49 16 21 C -0.11 -2.12 9.69 22.27 0.22 -1.90 16 22 C -0.11 -2.14 9.98 22.35 0.22 -1.92 16 23 C 0.06 1.54 6.72 22.57 0.15 1.69 16 24 O -0.50 -11.44 13.29 -79.64 -1.06 -12.50 16 25 H 0.05 1.37 7.65 -2.39 -0.02 1.35 16 26 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 27 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 28 H 0.13 4.59 4.69 -2.91 -0.01 4.58 16 29 H 0.09 1.99 7.55 -2.39 -0.02 1.97 16 30 H 0.14 1.67 7.91 -2.39 -0.02 1.65 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.43 7.79 -2.38 -0.02 1.42 16 33 H 0.11 1.24 7.94 -2.39 -0.02 1.22 16 34 H 0.11 4.03 7.20 -2.39 -0.02 4.02 16 35 H 0.10 3.86 7.57 -2.39 -0.02 3.84 16 36 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.40 5.69 9.06 -74.05 -0.67 5.01 16 Total: -1.00 -81.73 341.97 -0.62 -82.36 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.35 Total: 22.96 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 4.77 Total: -48.70 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.38 Total: -84.95 kcal Atomic # 8 Polarization: -111.27 SS G_CDS: -5.95 Total: -117.21 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.88 Total: 41.76 kcal Atomic # 16 Polarization: 104.08 SS G_CDS: -0.30 Total: 103.78 kcal Total: -81.73 -0.62 -82.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565236260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.777 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds