Wall clock time and date at job start Tue Mar 31 2020 11:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36021 * 116.99836 * 2 1 4 4 C 1.35471 * 120.47840 * 359.97438 * 3 2 1 5 5 O 1.33848 * 121.01769 * 179.97438 * 4 3 2 6 6 C 1.34305 * 122.03739 * 0.02574 * 5 4 3 7 7 C 1.47935 * 119.58519 * 179.97438 * 6 5 4 8 8 O 1.21540 * 119.99877 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99751 * 359.97438 * 7 6 5 10 10 C 1.38901 * 120.00179 * 184.38358 * 9 7 6 11 11 C 1.38730 * 120.28909 * 325.31725 * 10 9 7 12 12 C 1.38182 * 120.02956 * 180.25438 * 11 10 9 13 13 C 1.38902 * 120.62202 * 359.73981 * 12 11 10 14 14 C 1.36438 * 120.59747 * 0.02562 * 13 12 11 15 15 C 1.40756 * 119.94693 * 359.97438 * 14 13 12 16 16 C 1.41008 * 120.31035 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00625 * 154.83134 * 16 15 14 18 18 C 1.40008 * 119.99733 * 334.83476 * 16 15 14 19 19 N 1.30826 * 119.99722 * 334.82010 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 154.81748 * 18 16 15 21 21 H 1.48493 * 109.47214 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.46845 * 300.00213 * 20 18 16 23 23 H 1.48504 * 109.46996 * 59.99949 * 20 18 16 24 24 C 1.35882 * 120.83775 * 0.27375 * 6 5 4 25 25 C 1.42037 * 120.47646 * 180.02562 * 3 2 1 26 26 O 1.22128 * 120.91581 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47474 * 300.00019 * 1 2 3 29 29 H 1.09003 * 109.47218 * 60.00554 * 1 2 3 30 30 H 1.07998 * 119.49330 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99980 * 4.37628 * 9 7 6 32 32 H 1.07995 * 119.98212 * 359.97019 * 11 10 9 33 33 H 1.07997 * 119.68486 * 179.76255 * 12 11 10 34 34 H 1.08007 * 119.69795 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.02823 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00466 * 354.64148 * 19 18 16 37 37 H 1.08007 * 120.55640 * 179.72557 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3181 2.3542 -0.0005 5 8 1.9145 3.5525 0.0000 6 6 3.2512 3.6831 0.0005 7 6 3.8530 5.0344 0.0005 8 8 5.0618 5.1613 0.0005 9 7 3.0609 6.1248 -0.0006 10 6 3.6232 7.3916 -0.0926 11 6 4.8468 7.6591 0.5040 12 6 5.3987 8.9227 0.4137 13 6 4.7421 9.9338 -0.2761 14 6 3.5399 9.6977 -0.8765 15 6 2.9553 8.4195 -0.7999 16 6 1.7128 8.1671 -1.4171 17 1 1.4534 7.1629 -1.7178 18 6 0.8156 9.2185 -1.6400 19 7 0.8614 10.2881 -0.8880 20 14 -0.4469 9.0940 -3.0111 21 1 -1.2708 10.3291 -3.0390 22 1 0.2500 8.9350 -4.3127 23 1 -1.3232 7.9192 -2.7720 24 6 4.0578 2.5896 -0.0050 25 6 3.4642 1.2981 -0.0005 26 8 4.1541 0.2904 -0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.2396 2.2971 -0.0005 31 1 2.0982 6.0250 0.0628 32 1 5.3659 6.8806 1.0432 33 1 6.3497 9.1258 0.8835 34 1 5.1873 10.9159 -0.3377 35 1 3.0376 10.4905 -1.4108 36 1 1.4633 10.3213 -0.1281 37 1 5.1322 2.6999 -0.0090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567964927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:37 Heat of formation + Delta-G solvation = -73.640890 kcal Electronic energy + Delta-G solvation = -25243.813317 eV Core-core repulsion = 21339.345577 eV Total energy + Delta-G solvation = -3904.467739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25471 -39.96329 -39.27308 -38.25914 -37.60352 -34.35032 -34.02623 -32.65682 -31.60999 -29.54107 -28.84708 -28.11804 -25.63174 -24.86839 -24.08218 -22.12733 -21.21913 -20.23580 -19.15776 -18.77108 -18.35160 -17.78716 -16.97912 -16.34106 -16.17415 -15.75462 -15.34074 -14.99452 -14.91870 -14.66284 -14.64997 -14.22643 -14.12118 -14.10372 -13.45143 -12.96583 -12.82291 -12.43070 -12.16281 -11.87256 -11.75389 -11.65702 -11.18162 -10.88938 -10.61458 -10.54227 -10.09174 -9.93395 -9.84786 -9.68316 -9.33426 -9.12068 -8.48336 -7.79171 -7.56535 -7.17149 -4.65181 0.30693 0.76702 1.94723 2.38480 2.65743 2.75125 2.95958 3.02586 3.13496 3.23284 3.29635 3.45243 3.84690 4.00413 4.19458 4.38970 4.63070 4.68049 4.74339 4.97319 5.09963 5.13840 5.27993 5.36621 5.84002 6.07351 6.14590 6.31442 6.52266 6.69213 6.75593 6.79051 6.92276 7.19790 7.30970 7.48536 7.49885 7.58189 7.73097 7.82550 8.00651 8.06954 8.36123 8.53910 8.66778 9.83908 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004032 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.515261 B = 6942.006600 C = 8748.035107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.284 6.284 3 C -0.056 4.056 4 C -0.001 4.001 5 O -0.193 6.193 6 C 0.106 3.894 7 C 0.549 3.451 8 O -0.503 6.503 9 N -0.603 5.603 10 C -0.013 4.013 11 C -0.065 4.065 12 C -0.241 4.241 13 C -0.085 4.085 14 C -0.207 4.207 15 C 0.097 3.903 16 C -0.521 4.521 17 H 0.077 0.923 18 C 0.041 3.959 19 N -0.787 5.787 20 Si 1.064 2.936 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.239 4.239 25 C 0.410 3.590 26 O -0.464 6.464 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.411 0.589 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.302 0.698 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -10.745 1.431 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.197 6.197 3 C -0.103 4.103 4 C -0.067 4.067 5 O -0.095 6.095 6 C 0.054 3.946 7 C 0.333 3.667 8 O -0.380 6.380 9 N -0.244 5.244 10 C -0.106 4.106 11 C -0.085 4.085 12 C -0.261 4.261 13 C -0.104 4.104 14 C -0.227 4.227 15 C 0.092 3.908 16 C -0.548 4.548 17 H 0.095 0.905 18 C -0.182 4.182 19 N -0.409 5.409 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.201 1.201 24 C -0.261 4.261 25 C 0.297 3.703 26 O -0.348 6.348 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.219 0.781 31 H 0.248 0.752 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.211 -10.265 0.693 12.018 hybrid contribution 0.444 -0.931 0.767 1.285 sum -5.767 -11.196 1.460 12.678 Atomic orbital electron populations 1.23226 0.78547 1.04959 1.01433 1.86278 1.20843 1.23747 1.88853 1.21040 0.95399 0.85946 1.07933 1.23946 0.98266 0.81207 1.03326 1.82977 1.20426 1.30708 1.75438 1.22756 0.79868 0.96613 0.95358 1.17404 0.86745 0.81868 0.80657 1.90846 1.12656 1.83972 1.50546 1.42697 1.10525 1.04271 1.66945 1.17526 0.99306 0.84796 1.08997 1.20713 0.94386 0.96172 0.97260 1.20275 1.01634 0.93804 1.10365 1.20454 0.95217 0.97227 0.97503 1.20785 0.97250 0.97808 1.06820 1.17453 0.93235 0.90962 0.89105 1.20403 1.00753 0.98001 1.35690 0.90528 1.27025 0.99784 0.91375 1.00018 1.70465 1.31100 1.28047 1.11332 0.83642 0.75238 0.77355 0.75078 1.19707 1.19894 1.20063 1.23099 1.03705 0.90737 1.08551 1.17073 0.86151 0.89837 0.77220 1.90829 1.65142 1.37970 1.40881 0.87500 0.92307 0.92265 0.78110 0.75239 0.86990 0.88686 0.88910 0.87140 0.88435 0.80442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 101.05 0.99 1.08 16 2 O -0.28 -3.37 10.35 -35.04 -0.36 -3.73 16 3 C -0.06 -0.70 6.72 -39.11 -0.26 -0.96 16 4 C 0.00 -0.01 10.43 29.74 0.31 0.30 16 5 O -0.19 -2.38 9.07 6.91 0.06 -2.32 16 6 C 0.11 1.55 6.90 -36.46 -0.25 1.30 16 7 C 0.55 9.87 7.63 -12.29 -0.09 9.78 16 8 O -0.50 -10.34 13.67 5.33 0.07 -10.26 16 9 N -0.60 -11.46 4.88 -10.31 -0.05 -11.51 16 10 C -0.01 -0.29 6.33 -83.22 -0.53 -0.82 16 11 C -0.07 -1.46 8.68 -39.42 -0.34 -1.80 16 12 C -0.24 -5.20 10.04 -39.36 -0.39 -5.60 16 13 C -0.09 -1.86 9.96 -39.98 -0.40 -2.26 16 14 C -0.21 -4.90 7.87 -39.28 -0.31 -5.21 16 15 C 0.10 2.31 5.32 -106.64 -0.57 1.74 16 16 C -0.52 -12.14 8.35 -37.87 -0.32 -12.45 16 17 H 0.08 1.70 7.39 -52.49 -0.39 1.31 16 18 C 0.04 0.94 4.95 -17.32 -0.09 0.85 16 19 N -0.79 -18.92 12.32 55.55 0.68 -18.23 16 20 Si 1.06 19.40 30.00 -169.99 -5.10 14.30 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -4.67 7.11 56.52 0.40 -4.27 16 24 C -0.24 -3.54 9.56 -38.93 -0.37 -3.91 16 25 C 0.41 6.32 6.82 -36.63 -0.25 6.07 16 26 O -0.46 -8.59 17.74 -10.43 -0.19 -8.77 16 27 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 29 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 30 H 0.20 1.16 6.21 -52.49 -0.33 0.83 16 31 H 0.41 7.03 7.36 -40.82 -0.30 6.73 16 32 H 0.11 2.43 6.20 -52.49 -0.33 2.11 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.11 2.67 6.45 -52.49 -0.34 2.34 16 36 H 0.30 7.44 6.62 -40.82 -0.27 7.17 16 37 H 0.18 2.64 7.57 -52.48 -0.40 2.25 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -29.55 326.11 -6.04 -35.59 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -3.21 Total: 11.92 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.87 Total: -11.89 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.63 Total: -29.74 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.41 Total: -25.08 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.10 Total: 14.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.55 -6.04 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567964927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.051 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds