Wall clock time and date at job start Tue Mar 31 2020 11:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 O 1.42902 * 109.46895 * 55.00611 * 11 9 8 13 13 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 14 14 S 1.65600 * 120.00242 * 144.99782 * 13 9 8 15 15 O 1.42100 * 104.28004 * 181.06981 * 14 13 9 16 16 O 1.42100 * 104.28024 * 308.92761 * 14 13 9 17 17 C 1.81406 * 104.44958 * 64.99908 * 14 13 9 18 18 C 1.50692 * 109.47174 * 180.02562 * 17 14 13 19 19 H 1.07999 * 120.00434 * 359.97438 * 18 17 14 20 20 C 1.37884 * 120.00083 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99655 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47466 * 60.00268 * 22 20 18 24 24 H 1.48509 * 109.46791 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47423 * 299.99502 * 22 20 18 26 26 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 27 27 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 28 28 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47257 * 174.99796 * 11 9 8 34 34 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 35 35 H 0.96702 * 114.00237 * 180.02562 * 12 11 9 36 36 H 0.97000 * 120.00687 * 325.00081 * 13 9 8 37 37 H 1.08997 * 109.46856 * 300.00308 * 17 14 13 38 38 H 1.09001 * 109.46554 * 60.00078 * 17 14 13 39 39 H 0.96998 * 119.99637 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 8 4.9869 0.5682 -2.2346 13 7 5.5687 0.2966 0.5869 14 16 6.3275 -0.8592 1.4983 15 8 7.5396 -0.2418 1.9090 16 8 5.3481 -1.2548 2.4488 17 6 6.6633 -2.2072 0.3317 18 6 7.3602 -3.3327 1.0516 19 1 7.5796 -3.2458 2.1055 20 6 7.7187 -4.4733 0.3647 21 7 7.4528 -4.5786 -0.9190 22 14 8.5818 -5.8687 1.2574 23 1 7.7128 -6.3682 2.3529 24 1 8.8579 -6.9716 0.3020 25 1 9.8618 -5.3756 1.8265 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2129 2.3204 -0.0009 30 1 1.3342 4.5114 0.0020 31 1 3.7924 4.6380 -0.0014 32 1 5.1345 2.5751 0.0006 33 1 5.0954 -1.3366 -1.4420 34 1 3.4577 -0.7633 -1.8387 35 1 5.1248 0.3231 -3.1598 36 1 5.9951 1.1554 0.4401 37 1 5.7235 -2.5696 -0.0850 38 1 7.3003 -1.8407 -0.4733 39 1 7.7047 -5.3811 -1.4021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570464969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:11 Heat of formation + Delta-G solvation = -132.833302 kcal Electronic energy + Delta-G solvation = -24984.789938 eV Core-core repulsion = 21213.199374 eV Total energy + Delta-G solvation = -3771.590564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38180 -37.86388 -36.81826 -36.06782 -34.98319 -34.55819 -33.35342 -30.85104 -30.19123 -29.08991 -27.79298 -27.28717 -23.72903 -23.18983 -22.15217 -20.80809 -18.94175 -18.08597 -17.46532 -16.92679 -16.44909 -16.27893 -15.86298 -15.81281 -15.32401 -15.13645 -14.54937 -14.48691 -14.28024 -13.95565 -13.66939 -13.43797 -12.93892 -12.48288 -12.34939 -12.13728 -12.09332 -11.76123 -11.44298 -11.29961 -11.23428 -11.14843 -11.12659 -11.03776 -10.88217 -10.76775 -10.62543 -9.96591 -9.62724 -9.48983 -8.85029 -8.78383 -8.70301 -8.13630 -6.33632 -4.43638 1.29874 1.38574 1.46003 3.23096 3.24185 3.26148 3.31292 3.58725 3.78348 4.24354 4.44695 4.64705 4.74103 4.82858 4.93539 5.00944 5.02696 5.04131 5.23949 5.26331 5.36825 5.37968 5.46438 5.55751 5.62384 5.70797 5.86872 6.03410 6.08189 6.29918 6.46786 6.62149 6.66544 6.76439 6.80797 7.34237 7.44779 7.49683 7.75263 7.84171 8.57855 9.23896 10.78135 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.004082 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.520801 B = 6858.203239 C = 7212.821215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.131 3.869 4 C -0.210 4.210 5 C -0.087 4.087 6 C -0.157 4.157 7 C -0.056 4.056 8 C -0.097 4.097 9 C 0.203 3.797 10 H 0.116 0.884 11 C 0.055 3.945 12 O -0.564 6.564 13 N -1.120 6.120 14 S 2.579 3.421 15 O -0.980 6.980 16 O -0.980 6.980 17 C -0.420 4.420 18 C -0.534 4.534 19 H 0.069 0.931 20 C 0.077 3.923 21 N -0.879 5.879 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.375 0.625 36 H 0.410 0.590 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.401 12.315 -4.193 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.105 4.105 6 C -0.176 4.176 7 C -0.075 4.075 8 C -0.099 4.099 9 C 0.095 3.905 10 H 0.134 0.866 11 C -0.024 4.024 12 O -0.368 6.368 13 N -0.876 5.876 14 S 2.680 3.320 15 O -0.971 6.971 16 O -0.970 6.970 17 C -0.555 4.555 18 C -0.574 4.574 19 H 0.087 0.913 20 C -0.129 4.129 21 N -0.515 5.515 22 Si 0.730 3.270 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.222 0.778 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.244 12.263 -2.785 18.263 hybrid contribution 0.246 -0.763 -0.970 1.258 sum -12.999 11.500 -3.755 17.757 Atomic orbital electron populations 1.23050 0.78512 1.04032 1.01086 1.86103 1.21253 1.26682 1.88576 1.18775 0.91462 0.84427 0.96861 1.21124 0.99725 0.92296 1.09697 1.20872 0.94669 0.96754 0.98225 1.21019 0.93864 0.98294 1.04381 1.20743 1.00090 0.90772 0.95851 1.19129 0.90053 0.95657 1.05103 1.19522 0.82846 0.95337 0.92800 0.86631 1.22895 0.98110 0.90530 0.90884 1.86447 1.85963 1.40111 1.24324 1.55951 1.28487 1.31409 1.71739 1.05961 0.73306 0.76026 0.76755 1.93486 1.46539 1.75480 1.81569 1.93481 1.60655 1.83467 1.59400 1.27821 1.06662 1.10579 1.10487 1.20297 1.40933 1.00368 0.95773 0.91322 1.24907 0.94774 0.98307 0.94897 1.69933 1.45245 1.28554 1.07800 0.86442 0.80352 0.80661 0.79581 1.19417 1.20740 1.19434 0.92719 0.92831 0.88128 0.85615 0.86112 0.85982 0.85269 0.91197 0.92691 0.77848 0.75581 0.89803 0.89484 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.13 9.63 -19.41 -0.19 -4.32 16 3 C 0.13 1.80 6.66 -39.22 -0.26 1.54 16 4 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 5 C -0.09 -0.93 10.04 -39.60 -0.40 -1.33 16 6 C -0.16 -1.82 10.04 -39.56 -0.40 -2.22 16 7 C -0.06 -0.77 9.02 -39.61 -0.36 -1.12 16 8 C -0.10 -1.46 4.67 -104.47 -0.49 -1.95 16 9 C 0.20 3.33 2.54 -69.09 -0.18 3.15 16 10 H 0.12 2.01 7.03 -51.93 -0.37 1.65 16 11 C 0.06 0.82 6.86 37.16 0.25 1.08 16 12 O -0.56 -7.67 12.87 -35.23 -0.45 -8.13 16 13 N -1.12 -19.63 5.17 -5.89 -0.03 -19.67 16 14 S 2.58 56.60 5.36 -107.50 -0.58 56.02 16 15 O -0.98 -23.86 18.08 -57.54 -1.04 -24.90 16 16 O -0.98 -23.84 17.39 -57.54 -1.00 -24.84 16 17 C -0.42 -10.07 4.86 36.00 0.18 -9.90 16 18 C -0.53 -14.74 9.13 -34.44 -0.31 -15.05 16 19 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 20 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 21 N -0.88 -24.40 13.29 55.43 0.74 -23.67 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.13 1.11 6.30 -52.49 -0.33 0.77 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.67 6.08 -52.49 -0.32 1.35 16 33 H 0.07 1.13 5.73 -51.93 -0.30 0.83 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.38 3.63 9.12 45.56 0.42 4.04 16 36 H 0.41 6.43 6.52 -34.46 -0.22 6.21 16 37 H 0.08 1.95 6.88 -51.93 -0.36 1.59 16 38 H 0.09 2.08 8.14 -51.92 -0.42 1.66 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -35.31 340.32 -7.79 -43.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -3.93 Total: 10.68 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.42 Total: -25.29 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.71 Total: -43.33 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -2.68 Total: -62.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 56.60 SS G_CDS: -0.58 Total: 56.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.31 -7.79 -43.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570464969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.733 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds