Wall clock time and date at job start Tue Mar 31 2020 11:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 O 1.42902 * 109.46895 * 55.00611 * 11 9 8 13 13 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 14 14 S 1.65600 * 120.00242 * 144.99782 * 13 9 8 15 15 O 1.42100 * 104.28004 * 181.06981 * 14 13 9 16 16 O 1.42100 * 104.28024 * 308.92761 * 14 13 9 17 17 C 1.81406 * 104.44958 * 64.99908 * 14 13 9 18 18 C 1.50692 * 109.47174 * 180.02562 * 17 14 13 19 19 H 1.07999 * 120.00434 * 359.97438 * 18 17 14 20 20 C 1.37884 * 120.00083 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99655 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47466 * 60.00268 * 22 20 18 24 24 H 1.48509 * 109.46791 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47423 * 299.99502 * 22 20 18 26 26 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 27 27 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 28 28 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47257 * 174.99796 * 11 9 8 34 34 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 35 35 H 0.96702 * 114.00237 * 180.02562 * 12 11 9 36 36 H 0.97000 * 120.00687 * 325.00081 * 13 9 8 37 37 H 1.08997 * 109.46856 * 300.00308 * 17 14 13 38 38 H 1.09001 * 109.46554 * 60.00078 * 17 14 13 39 39 H 0.96998 * 119.99637 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 8 4.9869 0.5682 -2.2346 13 7 5.5687 0.2966 0.5869 14 16 6.3275 -0.8592 1.4983 15 8 7.5396 -0.2418 1.9090 16 8 5.3481 -1.2548 2.4488 17 6 6.6633 -2.2072 0.3317 18 6 7.3602 -3.3327 1.0516 19 1 7.5796 -3.2458 2.1055 20 6 7.7187 -4.4733 0.3647 21 7 7.4528 -4.5786 -0.9190 22 14 8.5818 -5.8687 1.2574 23 1 7.7128 -6.3682 2.3529 24 1 8.8579 -6.9716 0.3020 25 1 9.8618 -5.3756 1.8265 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2129 2.3204 -0.0009 30 1 1.3342 4.5114 0.0020 31 1 3.7924 4.6380 -0.0014 32 1 5.1345 2.5751 0.0006 33 1 5.0954 -1.3366 -1.4420 34 1 3.4577 -0.7633 -1.8387 35 1 5.1248 0.3231 -3.1598 36 1 5.9951 1.1554 0.4401 37 1 5.7235 -2.5696 -0.0850 38 1 7.3003 -1.8407 -0.4733 39 1 7.7047 -5.3811 -1.4021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570464969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:11 Heat of formation + Delta-G solvation = -161.921908 kcal Electronic energy + Delta-G solvation = -24986.051314 eV Core-core repulsion = 21213.199374 eV Total energy + Delta-G solvation = -3772.851940 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32077 -38.91181 -38.01813 -37.77206 -36.88135 -35.81079 -35.40665 -31.96011 -31.16127 -31.00936 -28.97047 -28.04945 -25.61997 -24.40610 -23.08115 -21.93657 -20.46459 -19.41090 -18.93009 -18.44211 -17.86692 -17.68001 -17.28401 -16.83900 -16.63501 -16.52235 -16.12614 -15.82400 -15.51928 -15.10641 -14.69855 -14.56463 -14.37962 -14.05757 -13.96421 -13.45190 -13.33741 -13.12260 -13.01650 -12.97256 -12.80022 -12.73270 -12.69050 -12.50570 -12.23452 -11.95542 -11.83817 -11.76287 -11.25172 -10.85021 -10.75131 -10.42204 -9.76105 -9.06686 -8.40338 -6.58135 -0.45383 0.40511 0.52929 1.38973 1.41867 1.49878 1.96147 2.32595 2.42671 2.83735 2.92746 2.97168 3.32877 3.45375 3.64077 3.93798 4.05837 4.18853 4.21139 4.33570 4.43719 4.44550 4.48584 4.53559 4.61101 4.74652 4.77763 4.80228 4.81607 4.96467 5.07310 5.33937 5.39518 5.54970 5.65428 5.72811 5.90288 6.11791 6.49299 6.50512 6.92022 7.13066 8.71741 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.004082 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.520801 B = 6858.203239 C = 7212.821215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.115 3.885 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.073 4.073 8 C -0.124 4.124 9 C 0.198 3.802 10 H 0.098 0.902 11 C 0.063 3.937 12 O -0.569 6.569 13 N -1.104 6.104 14 S 2.613 3.387 15 O -1.004 7.004 16 O -1.004 7.004 17 C -0.425 4.425 18 C -0.571 4.571 19 H 0.062 0.938 20 C 0.030 3.970 21 N -0.903 5.903 22 Si 0.961 3.039 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.264 1.264 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.420 0.580 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 13.463 -4.512 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.100 4.100 6 C -0.179 4.179 7 C -0.092 4.092 8 C -0.127 4.127 9 C 0.090 3.910 10 H 0.116 0.884 11 C -0.016 4.016 12 O -0.376 6.376 13 N -0.864 5.864 14 S 2.711 3.289 15 O -0.995 6.995 16 O -0.994 6.994 17 C -0.559 4.559 18 C -0.609 4.609 19 H 0.080 0.920 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.192 1.192 25 H -0.189 1.189 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.257 0.743 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.541 13.410 -3.129 20.027 hybrid contribution 0.537 -1.023 -0.932 1.484 sum -14.005 12.388 -4.061 19.133 Atomic orbital electron populations 1.23344 0.76392 1.05415 1.02420 1.86069 1.23587 1.26953 1.88647 1.18969 0.91311 0.85463 0.97298 1.21476 1.01074 0.91674 1.08509 1.21317 0.94594 0.97806 0.96240 1.21339 0.94508 0.98495 1.03518 1.20874 1.00333 0.91239 0.96737 1.19097 0.90770 0.95092 1.07696 1.19598 0.81928 0.96305 0.93126 0.88380 1.22692 0.98370 0.89968 0.90597 1.86407 1.85853 1.39682 1.25634 1.55479 1.28954 1.30644 1.71372 1.04722 0.72494 0.75540 0.76098 1.93440 1.48060 1.75783 1.82180 1.93444 1.61269 1.84175 1.60478 1.27821 1.06276 1.11065 1.10752 1.20713 1.42076 1.02099 0.96042 0.91958 1.25760 0.95260 1.00599 0.95730 1.70001 1.45696 1.29422 1.08840 0.85562 0.79364 0.77940 0.78842 1.18793 1.19248 1.18912 0.91649 0.91091 0.86920 0.82923 0.82725 0.83637 0.85499 0.93072 0.91316 0.75847 0.74306 0.89691 0.89925 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.75 9.63 -92.39 -0.89 -9.64 16 3 C 0.12 3.06 6.66 22.51 0.15 3.21 16 4 C -0.21 -4.20 9.04 22.37 0.20 -4.00 16 5 C -0.08 -1.48 10.04 22.26 0.22 -1.25 16 6 C -0.16 -3.33 10.04 22.28 0.22 -3.11 16 7 C -0.07 -1.94 9.02 22.25 0.20 -1.73 16 8 C -0.12 -3.69 4.67 -19.77 -0.09 -3.78 16 9 C 0.20 6.62 2.54 44.25 0.11 6.73 16 10 H 0.10 3.57 7.03 -2.38 -0.02 3.56 16 11 C 0.06 1.91 6.86 71.98 0.49 2.41 16 12 O -0.57 -15.26 12.87 -148.98 -1.92 -17.18 16 13 N -1.10 -39.50 5.17 -172.54 -0.89 -40.40 16 14 S 2.61 117.64 5.36 -56.49 -0.30 117.34 16 15 O -1.00 -49.71 18.08 -127.65 -2.31 -52.02 16 16 O -1.00 -50.03 17.39 -127.65 -2.22 -52.25 16 17 C -0.42 -21.05 4.86 71.23 0.35 -20.70 16 18 C -0.57 -32.16 9.13 25.60 0.23 -31.93 16 19 H 0.06 3.48 7.71 -2.91 -0.02 3.46 16 20 C 0.03 1.67 5.46 84.66 0.46 2.13 16 21 N -0.90 -50.58 13.29 21.45 0.28 -50.29 16 22 Si 0.96 42.65 29.54 68.60 2.03 44.67 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 27 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.13 3.24 6.08 -2.91 -0.02 3.22 16 33 H 0.05 1.72 5.73 -2.39 -0.01 1.70 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.39 7.30 9.12 -74.06 -0.68 6.62 16 36 H 0.42 13.34 6.52 -96.75 -0.63 12.70 16 37 H 0.09 4.13 6.88 -2.39 -0.02 4.11 16 38 H 0.08 4.10 8.14 -2.39 -0.02 4.08 16 39 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -75.66 340.32 -2.75 -78.42 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.20 Total: 31.98 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 3.67 Total: -50.64 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -0.61 Total: -90.69 kcal Atomic # 8 Polarization: -123.75 SS G_CDS: -7.34 Total: -131.08 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 117.64 SS G_CDS: -0.30 Total: 117.34 kcal Total: -75.66 -2.75 -78.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570464969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.505 kcal (2) G-P(sol) polarization free energy of solvation -75.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds