Wall clock time and date at job start Tue Mar 31 2020 11:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36092 * 117.00043 * 2 1 4 4 C 1.38533 * 119.99664 * 359.72961 * 3 2 1 5 5 C 1.38212 * 120.06720 * 179.76149 * 4 3 2 6 6 C 1.38857 * 120.07437 * 0.51156 * 5 4 3 7 7 N 1.39919 * 120.00698 * 179.71768 * 6 5 4 8 8 C 1.46498 * 119.99928 * 121.72183 * 7 6 5 9 9 S 1.65600 * 120.00050 * 301.73083 * 7 6 5 10 10 O 1.42104 * 104.27344 * 211.90640 * 9 7 6 11 11 O 1.42101 * 104.27446 * 339.76223 * 9 7 6 12 12 C 1.81403 * 104.45156 * 95.83676 * 9 7 6 13 13 C 1.50694 * 109.47121 * 180.02562 * 12 9 7 14 14 H 1.07999 * 120.00104 * 359.97438 * 13 12 9 15 15 C 1.37871 * 120.00164 * 179.97438 * 13 12 9 16 16 N 1.31519 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00250 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47208 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47130 * 120.00386 * 17 15 13 20 20 H 1.48507 * 109.47100 * 240.00008 * 17 15 13 21 21 C 1.38831 * 119.99309 * 359.74437 * 6 5 4 22 22 C 1.38515 * 119.92954 * 359.97438 * 21 6 5 23 23 O 1.35991 * 120.03265 * 180.02562 * 22 21 6 24 24 C 1.42898 * 117.00121 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47325 * 299.99203 * 1 2 3 26 26 H 1.08999 * 109.47535 * 59.99480 * 1 2 3 27 27 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.96534 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.96194 * 180.23353 * 5 4 3 30 30 H 1.09002 * 109.47188 * 90.00613 * 8 7 6 31 31 H 1.09000 * 109.47507 * 210.00606 * 8 7 6 32 32 H 1.09000 * 109.47362 * 330.00478 * 8 7 6 33 33 H 1.08999 * 109.46701 * 299.99901 * 12 9 7 34 34 H 1.09005 * 109.46853 * 59.99800 * 12 9 7 35 35 H 0.96991 * 120.00555 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.03262 * 180.02562 * 21 6 5 37 37 H 1.08996 * 109.47352 * 300.00351 * 24 23 22 38 38 H 1.08997 * 109.46861 * 60.00468 * 24 23 22 39 39 H 1.09002 * 109.46921 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2923 2.3744 -0.0057 5 6 1.9182 3.6066 -0.0007 6 6 3.3047 3.6828 -0.0007 7 7 3.9369 4.9311 -0.0017 8 6 4.8630 5.2839 1.0773 9 16 3.6382 6.0096 -1.2223 10 8 4.8590 6.7225 -1.3665 11 8 3.1277 5.2094 -2.2798 12 6 2.3423 7.0936 -0.5615 13 6 1.9799 8.1301 -1.5935 14 1 2.4795 8.1365 -2.5510 15 6 1.0107 9.0703 -1.3155 16 7 0.4026 9.0629 -0.1493 17 14 0.5619 10.3557 -2.5945 18 1 1.3858 10.1504 -3.8128 19 1 -0.8763 10.2277 -2.9415 20 1 0.8199 11.7113 -2.0457 21 6 4.0637 2.5203 -0.0004 22 6 3.4363 1.2854 0.0005 23 8 4.1777 0.1454 0.0013 24 6 5.5987 0.2956 0.0006 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2138 2.3171 -0.0105 29 1 1.3283 4.5113 -0.0013 30 1 5.8725 4.9761 0.8048 31 1 4.8422 6.3621 1.2359 32 1 4.5633 4.7760 1.9940 33 1 1.4612 6.4999 -0.3184 34 1 2.7068 7.5885 0.3388 35 1 -0.2795 9.7241 0.0462 36 1 5.1421 2.5789 0.0000 37 1 5.9057 0.8439 -0.8899 38 1 5.9063 0.8455 0.8900 39 1 6.0681 -0.6882 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573295510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:16 Heat of formation + Delta-G solvation = -110.796931 kcal Electronic energy + Delta-G solvation = -24772.358878 eV Core-core repulsion = 21001.723883 eV Total energy + Delta-G solvation = -3770.634995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54179 -38.42230 -37.78304 -36.27956 -35.10519 -34.63979 -33.42310 -30.34660 -29.60057 -29.09060 -27.48740 -27.27579 -25.38831 -23.67756 -22.26011 -21.80969 -19.13571 -18.18612 -17.50875 -16.95859 -16.70237 -16.35671 -16.04420 -15.88355 -15.42464 -15.25131 -14.77344 -14.50975 -14.39378 -14.30580 -13.69788 -13.02423 -12.90112 -12.70878 -12.56163 -12.37167 -12.19564 -12.09525 -11.61044 -11.48122 -11.32463 -11.23881 -11.20719 -11.18358 -11.02605 -10.95787 -10.82177 -10.65078 -9.87362 -9.63208 -8.97256 -8.77638 -8.53429 -7.56619 -6.39579 -4.50860 1.07302 1.35555 1.50762 3.16288 3.20464 3.23969 3.26749 3.30624 3.34647 3.73538 4.19018 4.68069 4.81314 4.82850 4.94286 5.00094 5.03169 5.10751 5.14636 5.16011 5.22921 5.34396 5.37511 5.42378 5.46914 5.58229 5.62786 5.78291 5.88910 6.06982 6.32479 6.42107 6.60906 6.61937 6.72570 7.02731 7.11077 7.37857 7.60077 7.67577 8.51110 9.17516 10.72023 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.004141 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.173413 B = 6759.828021 C = 7749.874716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.086 3.914 4 C -0.148 4.148 5 C -0.125 4.125 6 C 0.176 3.824 7 N -0.963 5.963 8 C 0.095 3.905 9 S 2.569 3.431 10 O -0.971 6.971 11 O -0.963 6.963 12 C -0.415 4.415 13 C -0.536 4.536 14 H 0.070 0.930 15 C 0.078 3.922 16 N -0.877 5.877 17 Si 0.905 3.095 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.180 4.180 22 C 0.111 3.889 23 O -0.307 6.307 24 C 0.026 3.974 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.269 0.731 36 H 0.138 0.862 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -15.204 5.281 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.040 3.960 4 C -0.167 4.167 5 C -0.146 4.146 6 C 0.081 3.919 7 N -0.791 5.791 8 C -0.049 4.049 9 S 2.672 3.328 10 O -0.962 6.962 11 O -0.954 6.954 12 C -0.551 4.551 13 C -0.575 4.575 14 H 0.088 0.912 15 C -0.129 4.129 16 N -0.513 5.513 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.202 4.202 22 C 0.065 3.935 23 O -0.220 6.220 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.072 -15.493 4.575 16.660 hybrid contribution -0.672 1.247 0.007 1.417 sum 3.400 -14.246 4.582 15.346 Atomic orbital electron populations 1.23054 0.78797 1.03670 1.01456 1.86153 1.20827 1.25881 1.89439 1.18150 0.88960 0.85153 1.03729 1.20873 1.00060 0.90695 1.05112 1.21146 0.93205 0.98514 1.01758 1.16911 0.90499 0.84487 0.99962 1.55856 1.56076 1.25290 1.41870 1.21497 0.92434 1.01523 0.89460 1.06614 0.77534 0.74659 0.74035 1.93486 1.44304 1.73515 1.84884 1.93508 1.82026 1.67746 1.52093 1.27783 1.10490 1.08987 1.07823 1.20358 1.23844 1.13719 0.99601 0.91150 1.24919 0.94822 0.97258 0.95873 1.69953 1.24597 1.35261 1.21518 0.86310 0.78733 0.80602 0.81307 1.18928 1.20243 1.20254 1.21012 1.00435 0.90283 1.08486 1.17942 0.88120 0.85516 1.01958 1.86150 1.18543 1.28114 1.89211 1.23056 0.78878 1.03617 1.01422 0.92705 0.92552 0.88479 0.84150 0.84580 0.92603 0.90325 0.91067 0.89586 0.89618 0.92173 0.84468 0.92615 0.92751 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.27 10.28 -34.64 -0.36 -4.63 16 3 C 0.09 1.29 6.70 -39.14 -0.26 1.03 16 4 C -0.15 -2.15 9.03 -39.48 -0.36 -2.51 16 5 C -0.13 -2.08 9.26 -39.36 -0.36 -2.45 16 6 C 0.18 3.00 4.83 -83.72 -0.40 2.59 16 7 N -0.96 -16.92 3.18 -65.36 -0.21 -17.13 16 8 C 0.10 1.32 9.96 59.85 0.60 1.92 16 9 S 2.57 56.27 5.00 -107.50 -0.54 55.73 16 10 O -0.97 -23.08 17.31 -57.54 -1.00 -24.08 16 11 O -0.96 -23.35 16.83 -57.54 -0.97 -24.32 16 12 C -0.41 -9.88 5.93 36.00 0.21 -9.67 16 13 C -0.54 -14.62 9.13 -34.45 -0.31 -14.93 16 14 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 15 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 16 N -0.88 -24.21 13.29 55.43 0.74 -23.47 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 C -0.18 -2.74 8.66 -39.26 -0.34 -3.08 16 22 C 0.11 1.68 6.70 -39.15 -0.26 1.42 16 23 O -0.31 -4.27 10.28 -34.32 -0.35 -4.62 16 24 C 0.03 0.24 9.81 101.05 0.99 1.24 16 25 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 26 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.14 1.64 6.29 -52.49 -0.33 1.31 16 29 H 0.14 2.27 6.62 -52.48 -0.35 1.93 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 32 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.09 2.01 6.70 -51.92 -0.35 1.66 16 34 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.14 1.78 6.30 -52.48 -0.33 1.45 16 37 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -34.73 343.43 -7.14 -41.88 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.01 Total: 1.05 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 0.39 Total: -21.20 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.53 Total: -40.61 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -2.67 Total: -57.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.54 Total: 55.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.73 -7.14 -41.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573295510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.922 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds