Wall clock time and date at job start Tue Mar 31 2020 10:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29319 * 126.05406 * 90.02749 * 3 2 1 5 5 N 1.26107 * 117.97480 * 179.97438 * 4 3 2 6 6 C 1.30313 * 117.59880 * 0.02562 * 5 4 3 7 7 S 1.76202 * 126.16723 * 180.02562 * 6 5 4 8 8 C 1.81002 * 100.00015 * 359.96902 * 7 6 5 9 9 H 1.08996 * 109.47107 * 55.00229 * 8 7 6 10 10 C 1.52996 * 109.47317 * 295.00198 * 8 7 6 11 11 C 1.50702 * 109.47054 * 175.00355 * 8 7 6 12 12 O 1.21276 * 119.99817 * 24.99923 * 11 8 7 13 13 N 1.34778 * 119.99894 * 205.00570 * 11 8 7 14 14 C 1.46497 * 119.99877 * 359.97438 * 13 11 8 15 15 C 1.46499 * 119.99967 * 180.02562 * 13 11 8 16 16 C 1.50694 * 109.47120 * 89.99324 * 15 13 11 17 17 H 1.08002 * 120.00553 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00063 * 179.97438 * 16 15 13 19 19 N 1.31520 * 119.99639 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00503 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46549 * 59.99870 * 20 18 16 22 22 H 1.48495 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46890 * 300.00148 * 20 18 16 24 24 S 1.76478 * 126.06184 * 269.71747 * 3 2 1 25 25 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 27 27 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 28 28 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 29 29 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 30 30 H 1.09004 * 109.47387 * 300.00089 * 10 8 7 31 31 H 1.09004 * 109.47046 * 60.00206 * 10 8 7 32 32 H 1.08996 * 109.47127 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.47100 * 90.00597 * 14 13 11 34 34 H 1.09002 * 109.47503 * 210.00199 * 14 13 11 35 35 H 1.09005 * 109.47667 * 330.00407 * 14 13 11 36 36 H 1.08995 * 109.46826 * 209.99766 * 15 13 11 37 37 H 1.09003 * 109.46609 * 329.99405 * 15 13 11 38 38 H 0.97000 * 119.99724 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2865 2.1383 1.0455 5 7 2.7031 3.3153 0.8683 6 6 2.8476 3.7260 -0.3600 7 16 3.4113 5.3173 -0.8648 8 6 3.6829 6.0823 0.7530 9 1 4.3550 5.4582 1.3418 10 6 2.3453 6.2209 1.4827 11 6 4.2972 7.4458 0.5671 12 8 4.1248 8.0524 -0.4688 13 7 5.0383 7.9910 1.5520 14 6 5.2461 7.2584 2.8035 15 6 5.6350 9.3167 1.3715 16 6 4.6729 10.3708 1.8555 17 1 3.7131 10.0821 2.2577 18 6 5.0184 11.7037 1.7857 19 7 6.1875 12.0553 1.2964 20 14 3.8261 13.0104 2.3863 21 1 3.5344 12.7902 3.8255 22 1 4.4311 14.3542 2.2032 23 1 2.5650 12.9255 1.6068 24 16 2.3852 2.3980 -1.4266 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6731 6.8451 0.8938 31 1 1.9009 5.2347 1.6171 32 1 2.5089 6.6812 2.4570 33 1 6.1414 6.6424 2.7195 34 1 5.3679 7.9665 3.6232 35 1 4.3836 6.6211 2.9991 36 1 6.5606 9.3794 1.9437 37 1 5.8493 9.4779 0.3150 38 1 6.4304 12.9931 1.2470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594923347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:20 Heat of formation + Delta-G solvation = 25.414039 kcal Electronic energy + Delta-G solvation = -21215.407356 eV Core-core repulsion = 17925.724534 eV Total energy + Delta-G solvation = -3289.682822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10480 -39.24867 -35.00147 -34.87492 -33.35164 -32.32630 -30.62324 -27.85578 -26.89284 -26.06655 -24.44999 -23.75602 -22.54796 -20.92114 -19.50436 -18.66319 -17.34043 -16.75598 -16.56936 -15.93809 -15.62324 -15.06604 -14.78771 -14.60513 -14.20669 -14.03709 -13.73849 -13.32854 -13.04904 -12.97351 -12.37391 -12.17553 -12.16000 -11.98744 -11.89368 -11.78330 -11.67442 -11.24398 -10.95384 -10.79894 -10.67871 -10.59378 -10.57218 -10.21254 -10.15505 -9.82188 -9.70784 -9.13481 -8.47004 -7.86979 -7.76758 -6.08322 -4.13545 0.06854 0.35338 0.97074 1.32132 1.85203 2.32237 3.16855 3.30341 3.34790 3.38489 3.78176 3.83177 4.40943 4.47427 4.71470 4.73136 4.80020 4.87991 4.92719 5.13728 5.26438 5.29439 5.34380 5.49930 5.54918 5.72028 5.74221 5.82264 5.86662 6.12924 6.26372 6.92029 7.34243 7.41092 7.86707 8.16500 8.21858 8.33230 8.74635 8.92903 9.51484 10.99848 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.002781 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.973543 B =10065.674515 C =10194.509637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C 0.023 3.977 4 N -0.250 5.250 5 N -0.271 5.271 6 C -0.009 4.009 7 S 0.105 5.895 8 C -0.115 4.115 9 H 0.120 0.880 10 C -0.142 4.142 11 C 0.525 3.475 12 O -0.527 6.527 13 N -0.589 5.589 14 C 0.075 3.925 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 S 0.096 5.904 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 -24.333 -2.418 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.262 4.262 4 N -0.086 5.086 5 N -0.113 5.113 6 C -0.395 4.395 7 S 0.336 5.664 8 C -0.249 4.249 9 H 0.138 0.862 10 C -0.201 4.201 11 C 0.308 3.692 12 O -0.404 6.404 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.127 3.873 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 S 0.336 5.664 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.711 -23.242 -3.780 24.778 hybrid contribution -0.683 0.317 1.694 1.854 sum -8.394 -22.925 -2.086 24.502 Atomic orbital electron populations 1.21798 0.93116 1.02865 1.02969 1.20166 0.96912 0.86348 1.04726 1.29889 1.04163 1.02913 0.89223 1.70718 1.11802 0.99063 1.26991 1.71766 1.16965 1.06714 1.15845 1.31913 1.05761 1.06907 0.94964 1.86441 1.76725 0.95094 1.08131 1.23846 1.03536 0.99720 0.97822 0.86180 1.21990 0.93292 1.03943 1.00853 1.19316 0.79825 0.85284 0.84775 1.90721 1.59675 1.62606 1.27445 1.48071 1.49532 1.20345 1.14145 1.21809 1.00326 0.97006 0.87780 1.19381 0.93266 0.75743 0.98923 1.21362 1.02503 0.91004 1.41927 0.92411 1.24935 0.95433 0.98500 0.95160 1.69922 1.20563 1.17533 1.45246 0.86540 0.81194 0.80450 0.79156 1.20206 1.21128 1.20122 1.85707 1.62677 1.05825 1.12188 0.91020 0.91744 0.92222 0.89222 0.88194 0.90975 0.90152 0.90475 0.93331 0.90214 0.91956 0.94576 0.93613 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.43 16 2 C -0.04 -0.24 6.56 -27.88 -0.18 -0.43 16 3 C 0.02 0.24 7.04 -13.33 -0.09 0.14 16 4 N -0.25 -3.31 11.55 33.57 0.39 -2.92 16 5 N -0.27 -3.88 9.09 31.32 0.28 -3.60 16 6 C -0.01 -0.12 7.55 52.12 0.39 0.27 16 7 S 0.10 1.57 21.07 -107.50 -2.26 -0.69 16 8 C -0.12 -1.84 1.84 -27.88 -0.05 -1.89 16 9 H 0.12 1.74 6.92 -51.92 -0.36 1.38 16 10 C -0.14 -2.09 8.77 37.16 0.33 -1.77 16 11 C 0.52 10.86 6.79 -10.98 -0.07 10.79 16 12 O -0.53 -13.03 15.71 5.56 0.09 -12.94 16 13 N -0.59 -12.40 2.86 -182.96 -0.52 -12.93 16 14 C 0.07 1.19 9.87 59.85 0.59 1.78 16 15 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 16 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 S 0.10 0.99 23.53 -107.50 -2.53 -1.54 16 25 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.13 5.91 -51.93 -0.31 0.82 16 32 H 0.08 1.09 6.84 -51.93 -0.36 0.74 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 35 H 0.06 0.84 5.17 -51.93 -0.27 0.58 16 36 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -33.14 347.79 -7.79 -40.93 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.02 Total: -3.95 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.83 Total: 1.29 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.89 Total: -45.07 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -4.79 Total: -2.23 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.14 -7.79 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594923347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.347 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds