Wall clock time and date at job start Tue Mar 31 2020 10:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47101 * 2 1 4 4 N 1.29316 * 126.06379 * 89.97637 * 3 2 1 5 5 N 1.26104 * 117.97679 * 179.72732 * 4 3 2 6 6 C 1.30308 * 117.60325 * 0.54781 * 5 4 3 7 7 S 1.76191 * 126.17267 * 179.76009 * 6 5 4 8 8 C 1.81007 * 100.00113 * 359.69461 * 7 6 5 9 9 H 1.08997 * 109.46742 * 305.00495 * 8 7 6 10 10 C 1.53002 * 109.46849 * 64.99732 * 8 7 6 11 11 C 1.50696 * 109.47471 * 184.99805 * 8 7 6 12 12 O 1.21280 * 120.00095 * 340.00421 * 11 8 7 13 13 N 1.34771 * 119.99966 * 159.99972 * 11 8 7 14 14 C 1.46496 * 120.00157 * 359.97438 * 13 11 8 15 15 C 1.46506 * 120.00084 * 180.02562 * 13 11 8 16 16 C 1.50699 * 109.46928 * 270.00021 * 15 13 11 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31522 * 119.99749 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00236 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47160 * 89.99730 * 20 18 16 22 22 H 1.48503 * 109.47061 * 209.99752 * 20 18 16 23 23 H 1.48500 * 109.46598 * 329.99398 * 20 18 16 24 24 S 1.76481 * 126.05644 * 269.99534 * 3 2 1 25 25 H 1.08999 * 109.47717 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47030 * 300.00402 * 1 2 3 27 27 H 1.08999 * 109.46873 * 60.00246 * 1 2 3 28 28 H 1.08998 * 109.47030 * 239.99598 * 2 1 3 29 29 H 1.08999 * 109.46873 * 119.99754 * 2 1 3 30 30 H 1.09002 * 109.47377 * 300.00294 * 10 8 7 31 31 H 1.08994 * 109.47069 * 60.00359 * 10 8 7 32 32 H 1.09000 * 109.46872 * 180.02562 * 10 8 7 33 33 H 1.08995 * 109.47445 * 269.99904 * 14 13 11 34 34 H 1.09001 * 109.47057 * 30.00532 * 14 13 11 35 35 H 1.08999 * 109.47333 * 150.00092 * 14 13 11 36 36 H 1.09004 * 109.47073 * 29.99849 * 15 13 11 37 37 H 1.09000 * 109.47212 * 149.99932 * 15 13 11 38 38 H 0.97001 * 119.99269 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2857 2.1387 1.0453 5 7 2.7069 3.3140 0.8680 6 6 2.8469 3.7263 -0.3602 7 16 3.4092 5.3178 -0.8652 8 6 3.6793 6.0837 0.7525 9 1 2.7643 6.0210 1.3414 10 6 4.8066 5.3502 1.4821 11 6 4.0590 7.5301 0.5665 12 8 4.4902 7.9114 -0.5010 13 7 3.9193 8.4000 1.5864 14 6 3.3979 7.9395 2.8756 15 6 4.2879 9.8063 1.4054 16 6 5.7369 9.9971 1.7730 17 1 6.3246 9.1549 2.1076 18 6 6.3126 11.2465 1.6813 19 7 7.5771 11.4130 2.0026 20 14 5.2964 12.7030 1.1020 21 1 4.6567 13.3567 2.2718 22 1 6.1779 13.6779 0.4108 23 1 4.2470 12.2319 0.1628 24 16 2.3787 2.4001 -1.4267 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.5320 4.3040 1.6166 31 1 5.7216 5.4128 0.8932 32 1 4.9689 5.8111 2.4564 33 1 2.3123 8.0367 2.8842 34 1 3.6704 6.8948 3.0256 35 1 3.8230 8.5444 3.6765 36 1 4.1369 10.0904 0.3639 37 1 3.6653 10.4305 2.0463 38 1 7.9819 12.2922 1.9384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594923348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:22 Heat of formation + Delta-G solvation = 31.062833 kcal Electronic energy + Delta-G solvation = -21244.814203 eV Core-core repulsion = 17955.376332 eV Total energy + Delta-G solvation = -3289.437872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12000 -39.37546 -35.12949 -34.89375 -33.39160 -32.31321 -30.65300 -28.45362 -26.90758 -26.21946 -24.43202 -23.76997 -22.26823 -20.92820 -19.50914 -18.69829 -17.38713 -17.02960 -16.78017 -16.04362 -15.63284 -15.09102 -14.85430 -14.62927 -14.16807 -14.05713 -13.76371 -13.34713 -13.21001 -12.95740 -12.43064 -12.35654 -12.20804 -12.11884 -11.90270 -11.87764 -11.68730 -11.57850 -11.00825 -10.79447 -10.67567 -10.59175 -10.56758 -10.19516 -10.14755 -9.83679 -9.60210 -9.24574 -8.63129 -7.91677 -7.81575 -6.12420 -4.12049 0.05376 0.33514 0.95623 1.30138 1.82291 2.30893 3.06749 3.24530 3.32876 3.36768 3.67146 3.81368 4.36317 4.46319 4.68009 4.70316 4.74214 4.86743 4.88935 5.08875 5.20844 5.28232 5.33387 5.47092 5.48799 5.70612 5.74175 5.76755 5.83090 6.08026 6.28007 6.55276 6.87384 7.16703 7.54449 8.02312 8.31834 8.39661 8.69481 8.90665 9.46882 11.00749 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.002814 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.966013 B = 9947.497720 C =10148.646797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C 0.024 3.976 4 N -0.250 5.250 5 N -0.271 5.271 6 C -0.010 4.010 7 S 0.107 5.893 8 C -0.114 4.114 9 H 0.121 0.879 10 C -0.145 4.145 11 C 0.528 3.472 12 O -0.526 6.526 13 N -0.585 5.585 14 C 0.072 3.928 15 C 0.216 3.784 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.263 1.263 24 S 0.097 5.903 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 -21.957 -3.844 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.261 4.261 4 N -0.086 5.086 5 N -0.113 5.113 6 C -0.397 4.397 7 S 0.338 5.662 8 C -0.248 4.248 9 H 0.139 0.861 10 C -0.203 4.203 11 C 0.311 3.689 12 O -0.403 6.403 13 N -0.316 5.316 14 C -0.071 4.071 15 C 0.095 3.905 16 C -0.570 4.570 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.188 1.188 24 S 0.337 5.663 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.001 -20.998 -5.171 25.762 hybrid contribution -0.511 0.408 1.136 1.310 sum -14.512 -20.591 -4.035 25.512 Atomic orbital electron populations 1.21795 0.93125 1.02878 1.02935 1.20170 0.96898 0.86347 1.04771 1.29892 1.04126 1.02890 0.89208 1.70716 1.11728 0.99137 1.26987 1.71762 1.16746 1.06905 1.15838 1.31916 1.05605 1.07150 0.94992 1.86447 1.76036 0.95815 1.07874 1.23807 1.05518 0.97442 0.98049 0.86096 1.22044 0.96394 1.00881 1.01009 1.19325 0.79391 0.85181 0.84961 1.90720 1.45359 1.78163 1.26083 1.47712 1.62274 1.10813 1.10818 1.21885 0.98099 1.00625 0.86535 1.19762 0.96737 0.75854 0.98117 1.21289 0.93909 0.96277 1.45482 0.90646 1.24853 0.94874 0.98647 0.94576 1.69897 1.11658 1.23593 1.48190 0.86868 0.80722 0.82771 0.79530 1.20049 1.20857 1.18804 1.85711 1.62682 1.05778 1.12179 0.91008 0.91760 0.92239 0.89195 0.88163 0.90049 0.90858 0.90221 0.93237 0.91459 0.90017 0.93878 0.95247 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.04 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.02 0.24 7.04 -13.34 -0.09 0.15 16 4 N -0.25 -3.27 11.55 33.57 0.39 -2.89 16 5 N -0.27 -3.83 9.07 31.32 0.28 -3.54 16 6 C -0.01 -0.14 7.55 52.12 0.39 0.26 16 7 S 0.11 1.57 21.01 -107.50 -2.26 -0.68 16 8 C -0.11 -1.79 1.84 -27.88 -0.05 -1.84 16 9 H 0.12 1.69 7.21 -51.92 -0.37 1.32 16 10 C -0.14 -2.13 8.73 37.16 0.32 -1.80 16 11 C 0.53 10.65 6.85 -10.99 -0.08 10.58 16 12 O -0.53 -12.65 15.62 5.56 0.09 -12.57 16 13 N -0.58 -11.88 2.86 -182.96 -0.52 -12.40 16 14 C 0.07 1.10 9.88 59.84 0.59 1.69 16 15 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 16 C -0.53 -15.05 9.94 -34.44 -0.34 -15.40 16 17 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.26 -6.25 6.54 56.52 0.37 -5.89 16 24 S 0.10 0.98 23.53 -107.50 -2.53 -1.55 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.14 5.90 -51.93 -0.31 0.83 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.89 4.76 -51.93 -0.25 0.64 16 35 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 36 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 37 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -34.08 343.42 -7.41 -41.49 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.95 Total: -3.03 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 0.81 Total: -0.01 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.92 Total: -45.46 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -4.79 Total: -2.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.08 -7.41 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594923348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.551 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds