Wall clock time and date at job start Tue Mar 31 2020 10:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47101 * 2 1 4 4 N 1.29316 * 126.06379 * 89.97637 * 3 2 1 5 5 N 1.26104 * 117.97679 * 179.72732 * 4 3 2 6 6 C 1.30308 * 117.60325 * 0.54781 * 5 4 3 7 7 S 1.76191 * 126.17267 * 179.76009 * 6 5 4 8 8 C 1.81007 * 100.00113 * 359.69461 * 7 6 5 9 9 H 1.08997 * 109.46742 * 305.00495 * 8 7 6 10 10 C 1.53002 * 109.46849 * 64.99732 * 8 7 6 11 11 C 1.50696 * 109.47471 * 184.99805 * 8 7 6 12 12 O 1.21280 * 120.00095 * 340.00421 * 11 8 7 13 13 N 1.34771 * 119.99966 * 159.99972 * 11 8 7 14 14 C 1.46496 * 120.00157 * 359.97438 * 13 11 8 15 15 C 1.46506 * 120.00084 * 180.02562 * 13 11 8 16 16 C 1.50699 * 109.46928 * 270.00021 * 15 13 11 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31522 * 119.99749 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00236 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47160 * 89.99730 * 20 18 16 22 22 H 1.48503 * 109.47061 * 209.99752 * 20 18 16 23 23 H 1.48500 * 109.46598 * 329.99398 * 20 18 16 24 24 S 1.76481 * 126.05644 * 269.99534 * 3 2 1 25 25 H 1.08999 * 109.47717 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47030 * 300.00402 * 1 2 3 27 27 H 1.08999 * 109.46873 * 60.00246 * 1 2 3 28 28 H 1.08998 * 109.47030 * 239.99598 * 2 1 3 29 29 H 1.08999 * 109.46873 * 119.99754 * 2 1 3 30 30 H 1.09002 * 109.47377 * 300.00294 * 10 8 7 31 31 H 1.08994 * 109.47069 * 60.00359 * 10 8 7 32 32 H 1.09000 * 109.46872 * 180.02562 * 10 8 7 33 33 H 1.08995 * 109.47445 * 269.99904 * 14 13 11 34 34 H 1.09001 * 109.47057 * 30.00532 * 14 13 11 35 35 H 1.08999 * 109.47333 * 150.00092 * 14 13 11 36 36 H 1.09004 * 109.47073 * 29.99849 * 15 13 11 37 37 H 1.09000 * 109.47212 * 149.99932 * 15 13 11 38 38 H 0.97001 * 119.99269 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2857 2.1387 1.0453 5 7 2.7069 3.3140 0.8680 6 6 2.8469 3.7263 -0.3602 7 16 3.4092 5.3178 -0.8652 8 6 3.6793 6.0837 0.7525 9 1 2.7643 6.0210 1.3414 10 6 4.8066 5.3502 1.4821 11 6 4.0590 7.5301 0.5665 12 8 4.4902 7.9114 -0.5010 13 7 3.9193 8.4000 1.5864 14 6 3.3979 7.9395 2.8756 15 6 4.2879 9.8063 1.4054 16 6 5.7369 9.9971 1.7730 17 1 6.3246 9.1549 2.1076 18 6 6.3126 11.2465 1.6813 19 7 7.5771 11.4130 2.0026 20 14 5.2964 12.7030 1.1020 21 1 4.6567 13.3567 2.2718 22 1 6.1779 13.6779 0.4108 23 1 4.2470 12.2319 0.1628 24 16 2.3787 2.4001 -1.4267 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.5320 4.3040 1.6166 31 1 5.7216 5.4128 0.8932 32 1 4.9689 5.8111 2.4564 33 1 2.3123 8.0367 2.8842 34 1 3.6704 6.8948 3.0256 35 1 3.8230 8.5444 3.6765 36 1 4.1369 10.0904 0.3639 37 1 3.6653 10.4305 2.0463 38 1 7.9819 12.2922 1.9384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594923348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:21 Heat of formation + Delta-G solvation = 7.960645 kcal Electronic energy + Delta-G solvation = -21245.815989 eV Core-core repulsion = 17955.376332 eV Total energy + Delta-G solvation = -3290.439658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.05427 -40.97568 -36.81487 -35.55595 -35.01560 -34.12251 -31.52455 -30.32697 -27.71381 -27.63909 -25.95831 -24.39432 -24.06985 -21.83037 -20.64681 -19.95684 -19.16432 -18.52777 -18.24881 -17.14629 -16.87884 -16.47526 -16.22061 -15.87342 -15.42876 -15.01029 -14.94731 -14.63235 -14.43784 -14.19650 -13.77869 -13.67463 -13.54757 -13.47560 -13.20160 -13.10732 -12.79911 -12.64775 -12.40817 -12.23503 -12.05109 -11.81024 -11.77143 -11.59901 -11.51819 -11.14821 -10.89182 -10.82692 -10.64758 -9.54741 -8.95751 -8.34598 -6.40365 -0.82503 -0.61775 0.05544 0.32826 0.67625 1.32559 1.37046 1.38168 1.47346 1.50810 2.15413 2.30962 2.99174 3.11213 3.30688 3.64366 3.71649 3.85815 4.02653 4.24203 4.26428 4.33458 4.51725 4.56446 4.61524 4.73587 4.76876 4.86067 4.91306 4.98734 5.05560 5.07747 5.32263 5.41887 5.47866 6.19230 6.45129 6.61228 7.07057 7.25408 7.39784 8.82178 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.002814 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.966013 B = 9947.497720 C =10148.646797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.040 3.960 4 N -0.284 5.284 5 N -0.283 5.283 6 C -0.032 4.032 7 S 0.084 5.916 8 C -0.100 4.100 9 H 0.142 0.858 10 C -0.137 4.137 11 C 0.521 3.479 12 O -0.574 6.574 13 N -0.593 5.593 14 C 0.066 3.934 15 C 0.223 3.777 16 C -0.537 4.537 17 H 0.030 0.970 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.948 3.052 21 H -0.251 1.251 22 H -0.283 1.283 23 H -0.254 1.254 24 S 0.143 5.857 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 -23.587 -3.972 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.245 4.245 4 N -0.119 5.119 5 N -0.125 5.125 6 C -0.420 4.420 7 S 0.314 5.686 8 C -0.234 4.234 9 H 0.160 0.840 10 C -0.195 4.195 11 C 0.307 3.693 12 O -0.454 6.454 13 N -0.323 5.323 14 C -0.076 4.076 15 C 0.101 3.899 16 C -0.576 4.576 17 H 0.048 0.952 18 C -0.187 4.187 19 N -0.584 5.584 20 Si 0.770 3.230 21 H -0.175 1.175 22 H -0.208 1.208 23 H -0.178 1.178 24 S 0.383 5.617 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.693 -22.676 -5.256 28.644 hybrid contribution 0.312 0.663 1.167 1.378 sum -16.380 -22.013 -4.089 27.742 Atomic orbital electron populations 1.21800 0.92211 1.04251 1.02232 1.20496 0.97479 0.83964 1.06565 1.30677 1.01239 1.03922 0.88612 1.70722 1.13779 0.99255 1.28186 1.71721 1.16573 1.07675 1.16512 1.31675 1.07117 1.07191 0.95978 1.86464 1.77416 0.97406 1.07314 1.23593 1.06400 0.94190 0.99175 0.84048 1.21986 0.95451 1.01406 1.00702 1.20034 0.78301 0.86865 0.84135 1.90684 1.47386 1.79395 1.27972 1.47798 1.62098 1.09652 1.12766 1.22176 0.99983 1.01541 0.83881 1.19457 0.94380 0.78787 0.97298 1.21507 0.95941 0.95056 1.45066 0.95154 1.25850 0.96089 1.02148 0.94582 1.70054 1.13815 1.24654 1.49870 0.85715 0.79066 0.78381 0.79840 1.17501 1.20836 1.17774 1.85566 1.61294 1.03801 1.11017 0.88650 0.93204 0.92210 0.86525 0.87193 0.88955 0.92486 0.89843 0.89811 0.89495 0.90493 0.95695 0.92648 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 71.98 0.71 -0.36 16 2 C -0.04 -0.38 6.56 29.85 0.20 -0.18 16 3 C 0.04 0.70 7.04 88.48 0.62 1.32 16 4 N -0.28 -6.96 11.55 -47.71 -0.55 -7.51 16 5 N -0.28 -7.66 9.07 -54.83 -0.50 -8.15 16 6 C -0.03 -0.83 7.55 130.47 0.99 0.16 16 7 S 0.08 2.47 21.01 -56.49 -1.19 1.28 16 8 C -0.10 -3.11 1.84 29.85 0.06 -3.05 16 9 H 0.14 3.75 7.21 -2.40 -0.02 3.74 16 10 C -0.14 -4.03 8.73 71.98 0.63 -3.40 16 11 C 0.52 21.32 6.85 87.66 0.60 21.92 16 12 O -0.57 -28.56 15.62 -3.03 -0.05 -28.61 16 13 N -0.59 -23.99 2.86 -851.14 -2.43 -26.43 16 14 C 0.07 1.91 9.88 127.77 1.26 3.17 16 15 C 0.22 10.73 4.23 85.63 0.36 11.09 16 16 C -0.54 -31.36 9.94 25.60 0.25 -31.11 16 17 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 18 C 0.01 0.68 5.47 84.65 0.46 1.14 16 19 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 20 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 21 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 24 S 0.14 2.61 23.53 -56.49 -1.33 1.28 16 25 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 2.54 5.90 -2.39 -0.01 2.53 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.35 6.33 -2.39 -0.02 2.34 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.16 4.76 -2.39 -0.01 2.15 16 35 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 36 H 0.02 1.30 6.48 -2.38 -0.02 1.28 16 37 H 0.06 2.39 7.50 -2.39 -0.02 2.37 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -77.26 343.42 3.31 -73.96 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.02 Total: 6.83 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.14 Total: 0.70 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.18 Total: -101.30 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.05 Total: -28.61 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.52 Total: 2.56 kcal Total: -77.26 3.31 -73.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594923348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds