Wall clock time and date at job start Tue Mar 31 2020 11:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99894 * 2 1 4 4 C 1.53007 * 109.46818 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46928 * 64.99847 * 4 3 2 6 6 C 1.36942 * 120.00160 * 269.99857 * 5 4 3 7 7 H 1.08003 * 120.00005 * 145.89451 * 6 5 4 8 8 C 1.38808 * 119.99910 * 325.89129 * 6 5 4 9 9 N 1.31623 * 119.99860 * 336.88576 * 8 6 5 10 10 Si 1.86798 * 120.00113 * 156.88289 * 8 6 5 11 11 H 1.48497 * 109.46882 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47065 * 120.00026 * 10 8 6 13 13 H 1.48494 * 109.47313 * 240.00331 * 10 8 6 14 14 C 1.46504 * 119.99874 * 90.00054 * 5 4 3 15 15 C 1.52996 * 109.46934 * 89.32580 * 14 5 4 16 16 S 1.81404 * 109.46976 * 179.97438 * 15 14 5 17 17 C 1.76207 * 103.00160 * 179.97438 * 16 15 14 18 18 C 1.39002 * 120.06856 * 359.72903 * 17 16 15 19 19 C 1.38068 * 119.93997 * 179.71686 * 18 17 16 20 20 C 1.38302 * 120.09718 * 0.55376 * 19 18 17 21 21 C 1.38405 * 120.14343 * 359.72415 * 20 19 18 22 22 Cl 1.73597 * 119.97348 * 180.02562 * 21 20 19 23 23 C 1.38219 * 120.05337 * 359.97438 * 21 20 19 24 24 H 1.08997 * 109.47180 * 300.00385 * 1 2 3 25 25 H 1.09001 * 109.47250 * 60.00449 * 1 2 3 26 26 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47260 * 59.99832 * 3 2 1 28 28 H 1.08997 * 109.47257 * 299.99517 * 3 2 1 29 29 H 1.08996 * 109.46836 * 304.99864 * 4 3 2 30 30 H 1.09000 * 109.46576 * 184.99652 * 4 3 2 31 31 H 0.96998 * 119.99703 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47413 * 329.31787 * 14 5 4 33 33 H 1.08999 * 109.46944 * 209.32295 * 14 5 4 34 34 H 1.08999 * 109.47072 * 299.99636 * 15 14 5 35 35 H 1.09005 * 109.47831 * 60.00045 * 15 14 5 36 36 H 1.07994 * 120.03289 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.95238 * 180.24909 * 19 18 17 38 38 H 1.07999 * 119.93221 * 179.74110 * 20 19 18 39 39 H 1.07998 * 120.04404 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0978 -0.7976 -1.3344 7 1 3.8766 -1.3035 -2.2626 8 6 4.5049 -1.5275 -0.2261 9 7 5.1951 -0.9425 0.7299 10 14 4.0731 -3.3399 -0.0912 11 1 3.2983 -3.7545 -1.2883 12 1 5.3207 -4.1410 -0.0078 13 1 3.2577 -3.5650 1.1292 14 6 4.2883 1.3997 -2.4130 15 6 5.7645 1.7997 -2.3723 16 16 6.1505 2.8340 -3.8117 17 6 7.8626 3.1907 -3.5958 18 6 8.5450 2.6887 -2.4938 19 6 9.8878 2.9650 -2.3303 20 6 10.5520 3.7499 -3.2552 21 6 9.8748 4.2565 -4.3508 22 17 10.7130 5.2407 -5.5094 23 6 8.5320 3.9786 -4.5238 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8507 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.4792 -1.4524 1.5045 32 1 3.6682 2.2959 -2.3928 33 1 4.0885 0.8403 -3.3269 34 1 5.9642 2.3592 -1.4584 35 1 6.3846 0.9035 -2.3926 36 1 8.0264 2.0796 -1.7683 37 1 10.4192 2.5716 -1.4763 38 1 11.6015 3.9678 -3.1225 39 1 8.0038 4.3737 -5.3789 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595524468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:59 Heat of formation + Delta-G solvation = -20.934515 kcal Electronic energy + Delta-G solvation = -21176.373075 eV Core-core repulsion = 17850.343972 eV Total energy + Delta-G solvation = -3326.029103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09934 -38.89944 -37.47503 -37.31738 -33.86121 -32.21861 -32.14159 -31.52536 -29.63542 -27.13372 -25.92395 -24.39433 -23.83362 -23.37093 -21.75160 -18.96034 -18.68269 -17.45355 -17.22825 -16.76492 -16.55047 -16.46767 -16.03171 -15.89209 -15.60281 -15.41473 -14.86626 -14.79375 -14.51137 -14.15309 -13.90987 -13.43442 -13.02367 -12.86676 -12.76042 -12.72364 -12.59549 -12.45773 -12.34629 -12.23004 -12.03998 -11.78895 -11.76240 -11.53143 -11.18086 -10.73741 -10.49374 -10.33045 -9.87877 -8.62836 -8.43748 -7.80191 -5.34390 0.01322 0.15400 0.46200 1.11330 1.45163 1.46771 1.51761 1.59366 2.49911 2.56330 3.21244 3.34296 3.70725 3.78503 4.00392 4.05529 4.07603 4.22245 4.34103 4.43826 4.45874 4.54344 4.61968 4.67144 4.73467 4.73892 4.83461 4.88196 4.93574 4.95348 5.05440 5.15886 5.20134 5.30485 5.65448 5.70796 5.81443 6.43218 6.66591 7.18943 7.86593 8.34776 9.17243 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002941 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.133392 B = 9517.031760 C =10315.494730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.055 3.945 4 C 0.135 3.865 5 N -0.579 5.579 6 C -0.244 4.244 7 H 0.050 0.950 8 C -0.020 4.020 9 N -0.912 5.912 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.164 3.836 15 C -0.094 4.094 16 S -0.125 6.125 17 C -0.079 4.079 18 C -0.143 4.143 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.023 4.023 22 Cl -0.060 7.060 23 C -0.104 4.104 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.249 0.751 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 11.428 -6.356 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.024 4.024 4 C 0.009 3.991 5 N -0.299 5.299 6 C -0.374 4.374 7 H 0.068 0.932 8 C -0.217 4.217 9 N -0.557 5.557 10 Si 0.776 3.224 11 H -0.199 1.199 12 H -0.222 1.222 13 H -0.220 1.220 14 C 0.036 3.964 15 C -0.245 4.245 16 S 0.120 5.880 17 C -0.192 4.192 18 C -0.167 4.167 19 C -0.105 4.105 20 C -0.139 4.139 21 C -0.051 4.051 22 Cl -0.031 7.031 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.296 11.568 -7.183 14.278 hybrid contribution 0.519 -1.205 1.273 1.828 sum 4.815 10.362 -5.910 12.864 Atomic orbital electron populations 1.22824 0.81621 1.02616 1.00074 1.88137 1.19561 1.28714 1.95191 1.23204 0.96571 0.84047 0.98556 1.21083 0.89931 0.96549 0.91564 1.44004 1.74170 1.02253 1.09475 1.19049 1.37786 0.82779 0.97834 0.93202 1.25430 0.97215 1.00409 0.98672 1.70046 1.37459 1.36885 1.11332 0.85551 0.77096 0.82294 0.77442 1.19873 1.22178 1.22045 1.20746 0.89684 0.94564 0.91374 1.24542 1.04307 0.99365 0.96301 1.85196 1.03650 1.62966 1.36232 1.21842 0.97954 1.01251 0.98202 1.21502 0.96414 1.01339 0.97439 1.21317 0.93147 0.96534 0.99471 1.21339 1.01629 0.98021 0.92864 1.20872 0.92492 0.98177 0.93546 1.98366 1.77544 1.68667 1.58524 1.20700 0.93000 0.99443 0.99742 0.93497 0.93849 0.90011 0.93285 0.94212 0.90642 0.92778 0.94149 0.91855 0.93113 0.90973 0.91698 0.86199 0.82596 0.82248 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.80 10.18 -148.98 -1.52 -18.32 16 3 C 0.05 2.09 6.28 71.98 0.45 2.54 16 4 C 0.13 5.97 5.73 86.38 0.49 6.46 16 5 N -0.58 -27.09 2.43 -702.01 -1.71 -28.80 16 6 C -0.24 -12.95 8.98 84.03 0.75 -12.19 16 7 H 0.05 2.72 7.93 -2.91 -0.02 2.70 16 8 C -0.02 -1.07 4.95 84.86 0.42 -0.65 16 9 N -0.91 -51.20 11.33 21.65 0.25 -50.95 16 10 Si 0.95 45.21 29.61 68.60 2.03 47.24 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 14 C 0.16 6.42 5.68 86.38 0.49 6.91 16 15 C -0.09 -3.45 4.66 71.98 0.34 -3.11 16 16 S -0.12 -3.87 21.92 -56.49 -1.24 -5.11 16 17 C -0.08 -2.30 6.11 22.62 0.14 -2.16 16 18 C -0.14 -4.10 9.36 22.41 0.21 -3.89 16 19 C -0.08 -1.94 10.04 22.24 0.22 -1.71 16 20 C -0.12 -2.40 9.83 22.32 0.22 -2.18 16 21 C -0.02 -0.51 6.32 22.30 0.14 -0.37 16 22 Cl -0.06 -1.17 28.95 -2.72 -0.08 -1.24 16 23 C -0.10 -2.65 9.57 22.43 0.21 -2.43 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 3.95 5.33 -2.39 -0.01 3.93 16 30 H 0.05 2.17 8.07 -2.39 -0.02 2.15 16 31 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 32 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 33 H 0.05 2.02 8.03 -2.39 -0.02 2.00 16 34 H 0.07 2.71 7.73 -2.39 -0.02 2.70 16 35 H 0.06 2.71 7.76 -2.39 -0.02 2.69 16 36 H 0.12 3.84 5.88 -2.91 -0.02 3.83 16 37 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -59.70 356.27 4.11 -55.58 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.03 Total: 12.37 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.34 Total: -10.77 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.46 Total: -79.75 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.52 Total: -18.32 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.24 Total: -5.11 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.24 kcal Total: -59.70 4.11 -55.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.649 kcal (2) G-P(sol) polarization free energy of solvation -59.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds