Wall clock time and date at job start Tue Mar 31 2020 10:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47249 * 2 1 4 4 C 1.53003 * 109.47188 * 119.99950 * 2 1 3 5 5 C 1.53004 * 109.47041 * 174.99738 * 4 2 1 6 6 N 1.46496 * 109.47016 * 179.97438 * 5 4 2 7 7 C 1.46499 * 120.00608 * 268.38752 * 6 5 4 8 8 C 1.50703 * 109.46858 * 277.41315 * 7 6 5 9 9 H 1.08000 * 120.00449 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99763 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00104 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99767 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47185 * 60.00641 * 12 10 8 14 14 H 1.48499 * 109.47124 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47279 * 300.00179 * 12 10 8 16 16 C 1.34779 * 119.99750 * 88.38908 * 6 5 4 17 17 O 1.21653 * 119.99797 * 5.91778 * 16 6 5 18 18 C 1.47044 * 119.99898 * 185.92261 * 16 6 5 19 19 C 1.44503 * 123.49320 * 331.90587 * 18 16 6 20 20 C 1.32696 * 113.09894 * 180.02562 * 19 18 16 21 21 S 1.75495 * 110.62770 * 0.02562 * 20 19 18 22 22 C 1.36225 * 123.48957 * 151.91194 * 18 16 6 23 23 Cl 1.73603 * 124.60936 * 359.97438 * 22 18 16 24 24 H 1.09001 * 109.47076 * 299.99799 * 1 2 3 25 25 H 1.08995 * 109.47413 * 60.00011 * 1 2 3 26 26 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47076 * 240.00201 * 2 1 3 28 28 H 1.09003 * 109.47355 * 59.99815 * 3 2 1 29 29 H 1.08998 * 109.47218 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47238 * 300.00400 * 3 2 1 31 31 H 1.08996 * 109.46903 * 55.00043 * 4 2 1 32 32 H 1.08998 * 109.46945 * 295.00135 * 4 2 1 33 33 H 1.09005 * 109.46785 * 60.00201 * 5 4 2 34 34 H 1.08995 * 109.47535 * 300.00551 * 5 4 2 35 35 H 1.09004 * 109.46870 * 37.40813 * 7 6 5 36 36 H 1.08998 * 109.47436 * 157.41420 * 7 6 5 37 37 H 0.97003 * 119.99645 * 179.97438 * 11 10 8 38 38 H 1.07996 * 123.44781 * 0.02717 * 19 18 16 39 39 H 1.07998 * 124.68632 * 180.26937 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8311 1.1879 6 7 4.0533 -1.5211 2.3844 7 6 4.4353 -0.7502 3.5701 8 6 5.8428 -0.2380 3.4041 9 1 6.3972 -0.4637 2.5052 10 6 6.4225 0.5197 4.3995 11 7 5.7473 0.7950 5.4940 12 14 8.1675 1.1541 4.1941 13 1 8.2397 2.0242 2.9930 14 1 8.5548 1.9356 5.3960 15 1 9.0954 0.0064 4.0305 16 6 4.1512 -2.8653 2.3942 17 8 3.9376 -3.4982 1.3775 18 6 4.5160 -3.5668 3.6340 19 6 5.3256 -2.9768 4.6754 20 6 5.5284 -3.7925 5.7022 21 16 4.7299 -5.3324 5.4357 22 6 4.1257 -4.8403 3.9198 23 17 3.1469 -5.8283 2.8807 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9995 0.1675 1.1420 34 1 3.8532 -1.3939 0.3002 35 1 3.7540 0.0921 3.6908 36 1 4.3828 -1.3893 4.4515 37 1 6.1553 1.3278 6.1945 38 1 5.7248 -1.9747 4.6232 39 1 6.1019 -3.5418 6.5823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:26 Heat of formation + Delta-G solvation = -11.983078 kcal Electronic energy + Delta-G solvation = -22383.076471 eV Core-core repulsion = 19057.435531 eV Total energy + Delta-G solvation = -3325.640940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.54888 -37.02482 -36.33610 -36.02407 -34.71188 -32.69560 -29.50228 -29.06352 -27.13980 -26.90952 -24.89536 -23.15109 -22.38230 -20.25695 -19.67058 -18.48993 -17.56466 -16.64523 -15.92144 -15.57082 -14.90400 -14.65115 -14.40189 -14.18413 -13.61461 -13.47402 -13.21992 -13.02187 -12.83336 -12.54741 -12.38903 -12.10127 -12.03715 -11.64382 -11.45729 -11.18104 -11.14705 -10.92625 -10.88571 -10.67568 -10.55745 -10.46563 -10.28346 -10.13938 -9.96746 -9.73731 -9.11433 -8.72043 -8.37867 -8.02888 -7.69344 -6.31182 -4.40440 1.04117 1.40147 2.12289 2.58429 2.62500 3.17662 3.23052 3.26438 3.82427 3.97825 4.25422 4.99719 5.08763 5.12786 5.17496 5.26742 5.56828 5.66255 5.74399 5.75454 5.88421 5.92828 6.02326 6.04706 6.14213 6.24782 6.29368 6.38950 6.42202 6.60680 6.64950 6.70830 6.76453 6.99064 7.15159 7.50370 7.64669 7.92048 8.29692 8.68635 8.97217 9.27550 10.73004 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.007985 B = 0.007165 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.820676 B = 3906.787099 C = 6859.221340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.585 5.585 7 C 0.212 3.788 8 C -0.542 4.542 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.572 3.428 17 O -0.554 6.554 18 C -0.129 4.129 19 C -0.097 4.097 20 C -0.236 4.236 21 S 0.164 5.836 22 C -0.134 4.134 23 Cl -0.004 7.004 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.269 0.731 38 H 0.216 0.784 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -5.327 -1.589 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.166 4.166 5 C -0.002 4.002 6 N -0.315 5.315 7 C 0.092 3.908 8 C -0.581 4.581 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.521 5.521 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.358 3.642 17 O -0.435 6.435 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.371 4.371 21 S 0.427 5.573 22 C -0.280 4.280 23 Cl 0.025 6.975 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.232 0.768 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.461 -6.930 -1.167 8.900 hybrid contribution 0.970 1.747 -0.829 2.163 sum -4.491 -5.183 -1.996 7.143 Atomic orbital electron populations 1.21819 0.95623 1.01423 1.01319 1.21038 0.95335 0.96368 0.98455 1.21900 1.01666 0.95802 1.01274 1.21994 0.96535 1.00439 0.97652 1.21364 0.92865 0.97785 0.88180 1.48014 1.62005 1.05035 1.16419 1.20179 0.95499 0.92047 0.83042 1.21480 0.98937 1.33377 1.04279 0.91747 1.24975 0.98348 0.95346 0.94995 1.69924 1.37342 1.37783 1.07072 0.86584 0.84126 0.79286 0.77807 1.19967 1.21006 1.19850 1.17430 0.77572 0.82438 0.86712 1.90729 1.52361 1.66840 1.33540 1.20504 1.03128 0.92963 0.98248 1.22888 0.95857 1.03503 0.90140 1.25524 1.09726 0.96275 1.05566 1.82754 1.47947 1.17027 1.09583 1.25040 1.05923 0.96682 1.00338 1.98354 1.67175 1.67100 1.64894 0.92806 0.93084 0.92940 0.91334 0.92623 0.92051 0.93288 0.92114 0.91794 0.89971 0.91061 0.94800 0.91925 0.92155 0.76814 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.35 16 2 C -0.09 -1.24 2.92 -90.62 -0.26 -1.50 16 3 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 4 C -0.13 -2.07 5.00 -26.73 -0.13 -2.20 16 5 C 0.12 2.25 5.20 -4.04 -0.02 2.23 16 6 N -0.59 -12.43 2.46 -176.47 -0.43 -12.86 16 7 C 0.21 4.84 4.66 -5.19 -0.02 4.81 16 8 C -0.54 -13.24 7.66 -34.44 -0.26 -13.50 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 11 N -0.88 -22.48 13.29 55.43 0.74 -21.75 16 12 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 16 C 0.57 12.55 7.45 -12.69 -0.09 12.45 16 17 O -0.55 -12.84 15.08 5.23 0.08 -12.76 16 18 C -0.13 -2.62 5.62 -104.59 -0.59 -3.21 16 19 C -0.10 -1.91 7.95 -39.00 -0.31 -2.22 16 20 C -0.24 -3.87 11.11 28.84 0.32 -3.55 16 21 S 0.16 2.41 23.02 -107.50 -2.47 -0.06 16 22 C -0.13 -2.43 6.85 30.01 0.21 -2.22 16 23 Cl 0.00 -0.07 27.63 -51.86 -1.43 -1.50 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.51 6.48 -51.93 -0.34 1.18 16 34 H 0.07 1.35 7.40 -51.93 -0.38 0.97 16 35 H 0.03 0.82 8.12 -51.93 -0.42 0.40 16 36 H 0.06 1.46 4.03 -51.93 -0.21 1.25 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.22 4.77 3.65 -52.49 -0.19 4.58 16 39 H 0.17 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -26.36 345.67 -9.17 -35.53 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.23 Total: 4.03 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.59 Total: -10.25 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.30 Total: -34.61 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.47 Total: -0.06 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.43 Total: -1.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.36 -9.17 -35.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.544 kcal (2) G-P(sol) polarization free energy of solvation -26.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds