Wall clock time and date at job start Tue Mar 31 2020 10:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.53007 * 109.46840 * 239.99624 * 2 1 3 5 5 C 1.53005 * 109.47331 * 120.00017 * 2 1 3 6 6 N 1.46500 * 109.47109 * 62.35156 * 5 2 1 7 7 C 1.46497 * 120.00442 * 268.75331 * 6 5 2 8 8 C 1.50711 * 109.47035 * 277.14849 * 7 6 5 9 9 H 1.07998 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00085 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00257 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99946 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47266 * 59.99814 * 12 10 8 14 14 H 1.48505 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47288 * 299.99747 * 12 10 8 16 16 C 1.34781 * 119.99647 * 88.75076 * 6 5 2 17 17 O 1.21650 * 120.00388 * 6.69591 * 16 6 5 18 18 C 1.47049 * 119.99832 * 186.69347 * 16 6 5 19 19 C 1.44502 * 123.49203 * 331.36576 * 18 16 6 20 20 C 1.32698 * 113.10097 * 180.02562 * 19 18 16 21 21 S 1.75492 * 110.62419 * 359.97438 * 20 19 18 22 22 C 1.36222 * 123.49252 * 151.36398 * 18 16 6 23 23 Cl 1.73598 * 124.60565 * 359.97438 * 22 18 16 24 24 H 1.09005 * 109.46965 * 299.99712 * 1 2 3 25 25 H 1.08992 * 109.47196 * 59.99832 * 1 2 3 26 26 H 1.09008 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47176 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46585 * 299.99875 * 3 2 1 29 29 H 1.08998 * 109.47404 * 59.99912 * 3 2 1 30 30 H 1.09000 * 109.47004 * 305.55979 * 4 2 1 31 31 H 1.08999 * 109.46839 * 65.56001 * 4 2 1 32 32 H 1.09006 * 109.46621 * 185.55981 * 4 2 1 33 33 H 1.09002 * 109.46762 * 302.35500 * 5 2 1 34 34 H 1.08996 * 109.47304 * 182.35539 * 5 2 1 35 35 H 1.09000 * 109.47259 * 37.14457 * 7 6 5 36 36 H 1.08994 * 109.47395 * 157.14804 * 7 6 5 37 37 H 0.97000 * 120.00531 * 180.02562 * 11 10 8 38 38 H 1.08007 * 123.45459 * 0.02562 * 19 18 16 39 39 H 1.08000 * 124.68763 * 180.26496 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.5986 -2.1179 1.2213 7 6 0.3312 -2.4983 1.8500 8 6 0.5441 -2.6981 3.3286 9 1 1.5253 -2.5563 3.7568 10 6 -0.5136 -3.0629 4.1342 11 7 -1.7084 -3.2361 3.6126 12 14 -0.2496 -3.3113 5.9667 13 1 0.2429 -2.0476 6.5716 14 1 -1.5343 -3.6968 6.6042 15 1 0.7522 -4.3862 6.1813 16 6 2.3584 -3.0528 0.6170 17 8 3.4647 -2.7627 0.2024 18 6 1.8501 -4.4236 0.4588 19 6 0.9039 -5.0327 1.3653 20 6 0.5864 -6.2762 1.0282 21 16 1.4395 -6.7591 -0.4274 22 6 2.2225 -5.2508 -0.5574 23 17 3.3421 -4.8263 -1.8143 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5975 -1.7163 -1.3003 31 1 1.7601 -0.1533 -2.1364 32 1 3.1254 -0.8084 -1.2008 33 1 1.6426 -0.2324 2.1387 34 1 3.1292 -0.6848 1.2706 35 1 -0.4040 -1.7092 1.6922 36 1 -0.0304 -3.4259 1.4064 37 1 -2.4527 -3.4924 4.1794 38 1 0.4968 -4.5276 2.2289 39 1 -0.1053 -6.9028 1.5717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:28 Heat of formation + Delta-G solvation = -3.735028 kcal Electronic energy + Delta-G solvation = -23176.280359 eV Core-core repulsion = 19850.997081 eV Total energy + Delta-G solvation = -3325.283278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.78770 -37.29957 -36.31370 -35.99696 -34.28179 -32.46210 -29.13381 -27.93631 -26.92099 -26.83960 -26.19011 -23.66293 -22.90302 -20.32653 -18.92046 -18.16391 -17.50289 -16.70714 -15.85824 -15.48681 -14.88606 -14.60494 -14.27345 -13.91000 -13.57819 -13.42855 -13.13822 -12.84610 -12.72339 -12.57677 -12.17744 -11.97085 -11.81909 -11.51712 -11.22980 -11.18097 -11.10388 -10.94867 -10.91575 -10.61669 -10.56043 -10.42802 -10.25168 -10.20139 -9.82576 -9.72613 -9.07073 -8.69139 -8.36768 -8.02066 -7.63401 -6.29711 -4.38540 1.04818 1.40515 2.12608 2.58846 2.63161 3.18148 3.23539 3.27052 3.84039 4.00992 4.26805 5.01116 5.20056 5.22197 5.29201 5.37266 5.62298 5.70084 5.90654 5.92746 5.96846 6.14854 6.20155 6.22549 6.29404 6.34798 6.43224 6.52356 6.59263 6.61952 6.67314 6.82690 6.88877 6.98699 7.18643 7.52947 7.66467 7.94653 8.32827 8.70533 9.00474 9.29209 10.74237 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.007508 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.399488 B = 3728.672896 C = 5912.539825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.131 4.131 5 C 0.132 3.868 6 N -0.582 5.582 7 C 0.206 3.794 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.574 3.426 17 O -0.551 6.551 18 C -0.129 4.129 19 C -0.097 4.097 20 C -0.237 4.237 21 S 0.163 5.837 22 C -0.134 4.134 23 Cl -0.004 7.004 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.268 0.732 38 H 0.215 0.785 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -1.323 -7.428 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.188 4.188 5 C 0.009 3.991 6 N -0.311 5.311 7 C 0.087 3.913 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.522 5.522 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.361 3.639 17 O -0.432 6.432 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.371 4.371 21 S 0.425 5.575 22 C -0.280 4.280 23 Cl 0.025 6.975 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.229 -2.493 -8.543 9.467 hybrid contribution -0.059 1.186 1.840 2.190 sum 3.170 -1.307 -6.703 7.529 Atomic orbital electron populations 1.21964 0.94437 1.02629 1.00752 1.20961 0.96141 0.95072 0.96392 1.21776 1.00761 0.95397 1.01361 1.21820 1.01614 0.99641 0.95721 1.21361 0.99658 0.81388 0.96740 1.47920 1.23385 1.06525 1.53242 1.20315 0.80200 0.98383 0.92417 1.21497 0.95948 1.47887 0.92656 0.91832 1.24962 0.94842 0.94874 0.98997 1.69918 1.00109 1.45885 1.36268 0.86598 0.77603 0.79035 0.84628 1.20014 1.21047 1.19904 1.17341 0.84590 0.83658 0.78327 1.90723 1.19684 1.81327 1.51447 1.20529 1.01280 0.96756 0.96273 1.22873 0.94188 0.93519 1.01814 1.25522 1.08913 1.01053 1.01637 1.82760 1.38684 1.10239 1.25779 1.25026 1.03445 1.01103 0.98436 1.98354 1.58464 1.92750 1.47932 0.92628 0.93755 0.91597 0.92829 0.92970 0.92704 0.93113 0.94035 0.91975 0.90278 0.90932 0.93868 0.92119 0.92199 0.76880 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.38 37.16 0.27 -1.99 16 2 C -0.08 -1.35 0.85 -154.51 -0.13 -1.48 16 3 C -0.14 -1.79 8.47 37.16 0.31 -1.48 16 4 C -0.13 -2.17 7.12 37.16 0.26 -1.90 16 5 C 0.13 2.43 4.61 -4.04 -0.02 2.41 16 6 N -0.58 -11.98 2.00 -176.46 -0.35 -12.33 16 7 C 0.21 4.61 3.86 -5.19 -0.02 4.59 16 8 C -0.54 -13.12 7.69 -34.44 -0.26 -13.39 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.65 5.21 -17.82 -0.09 1.56 16 11 N -0.88 -22.38 13.29 55.43 0.74 -21.65 16 12 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 C 0.57 12.19 5.67 -12.69 -0.07 12.12 16 17 O -0.55 -12.26 13.49 5.23 0.07 -12.19 16 18 C -0.13 -2.57 5.62 -104.58 -0.59 -3.16 16 19 C -0.10 -1.90 7.96 -39.00 -0.31 -2.21 16 20 C -0.24 -3.86 11.11 28.85 0.32 -3.54 16 21 S 0.16 2.38 23.02 -107.50 -2.47 -0.09 16 22 C -0.13 -2.40 6.85 30.01 0.21 -2.19 16 23 Cl 0.00 -0.06 27.64 -51.86 -1.43 -1.50 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.19 5.90 -51.92 -0.31 0.89 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.94 6.63 -51.93 -0.34 0.59 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.10 7.34 -51.93 -0.38 0.71 16 33 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 34 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 35 H 0.04 1.01 5.88 -51.93 -0.31 0.70 16 36 H 0.06 1.40 4.02 -51.93 -0.21 1.19 16 37 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.22 4.73 3.69 -52.48 -0.19 4.53 16 39 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -25.72 334.62 -8.60 -34.32 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.05 Total: 4.62 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.12 Total: -10.66 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.38 Total: -33.98 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.47 Total: -0.09 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.43 Total: -1.50 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -25.72 -8.60 -34.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.585 kcal (2) G-P(sol) polarization free energy of solvation -25.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds