Wall clock time and date at job start Tue Mar 31 2020 10:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.53007 * 109.46840 * 239.99624 * 2 1 3 5 5 C 1.53005 * 109.47331 * 120.00017 * 2 1 3 6 6 N 1.46500 * 109.47109 * 62.35156 * 5 2 1 7 7 C 1.46497 * 120.00442 * 268.75331 * 6 5 2 8 8 C 1.50711 * 109.47035 * 277.14849 * 7 6 5 9 9 H 1.07998 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00085 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00257 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99946 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47266 * 59.99814 * 12 10 8 14 14 H 1.48505 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47288 * 299.99747 * 12 10 8 16 16 C 1.34781 * 119.99647 * 88.75076 * 6 5 2 17 17 O 1.21650 * 120.00388 * 6.69591 * 16 6 5 18 18 C 1.47049 * 119.99832 * 186.69347 * 16 6 5 19 19 C 1.44502 * 123.49203 * 331.36576 * 18 16 6 20 20 C 1.32698 * 113.10097 * 180.02562 * 19 18 16 21 21 S 1.75492 * 110.62419 * 359.97438 * 20 19 18 22 22 C 1.36222 * 123.49252 * 151.36398 * 18 16 6 23 23 Cl 1.73598 * 124.60565 * 359.97438 * 22 18 16 24 24 H 1.09005 * 109.46965 * 299.99712 * 1 2 3 25 25 H 1.08992 * 109.47196 * 59.99832 * 1 2 3 26 26 H 1.09008 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47176 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46585 * 299.99875 * 3 2 1 29 29 H 1.08998 * 109.47404 * 59.99912 * 3 2 1 30 30 H 1.09000 * 109.47004 * 305.55979 * 4 2 1 31 31 H 1.08999 * 109.46839 * 65.56001 * 4 2 1 32 32 H 1.09006 * 109.46621 * 185.55981 * 4 2 1 33 33 H 1.09002 * 109.46762 * 302.35500 * 5 2 1 34 34 H 1.08996 * 109.47304 * 182.35539 * 5 2 1 35 35 H 1.09000 * 109.47259 * 37.14457 * 7 6 5 36 36 H 1.08994 * 109.47395 * 157.14804 * 7 6 5 37 37 H 0.97000 * 120.00531 * 180.02562 * 11 10 8 38 38 H 1.08007 * 123.45459 * 0.02562 * 19 18 16 39 39 H 1.08000 * 124.68763 * 180.26496 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.5986 -2.1179 1.2213 7 6 0.3312 -2.4983 1.8500 8 6 0.5441 -2.6981 3.3286 9 1 1.5253 -2.5563 3.7568 10 6 -0.5136 -3.0629 4.1342 11 7 -1.7084 -3.2361 3.6126 12 14 -0.2496 -3.3113 5.9667 13 1 0.2429 -2.0476 6.5716 14 1 -1.5343 -3.6968 6.6042 15 1 0.7522 -4.3862 6.1813 16 6 2.3584 -3.0528 0.6170 17 8 3.4647 -2.7627 0.2024 18 6 1.8501 -4.4236 0.4588 19 6 0.9039 -5.0327 1.3653 20 6 0.5864 -6.2762 1.0282 21 16 1.4395 -6.7591 -0.4274 22 6 2.2225 -5.2508 -0.5574 23 17 3.3421 -4.8263 -1.8143 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5975 -1.7163 -1.3003 31 1 1.7601 -0.1533 -2.1364 32 1 3.1254 -0.8084 -1.2008 33 1 1.6426 -0.2324 2.1387 34 1 3.1292 -0.6848 1.2706 35 1 -0.4040 -1.7092 1.6922 36 1 -0.0304 -3.4259 1.4064 37 1 -2.4527 -3.4924 4.1794 38 1 0.4968 -4.5276 2.2289 39 1 -0.1053 -6.9028 1.5717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597161110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:28 Heat of formation + Delta-G solvation = -15.130752 kcal Electronic energy + Delta-G solvation = -23176.774515 eV Core-core repulsion = 19850.997081 eV Total energy + Delta-G solvation = -3325.777433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34300 -38.67393 -37.72751 -37.49759 -35.90046 -34.24974 -30.55118 -29.63332 -28.24029 -28.10945 -27.71949 -25.19661 -24.59306 -21.79759 -20.35854 -19.58713 -18.95391 -18.51510 -17.42431 -17.04654 -16.53517 -16.21676 -15.73449 -15.28646 -14.95705 -14.82740 -14.51665 -14.33067 -14.25230 -14.21163 -13.69601 -13.35120 -13.10770 -12.99079 -12.78947 -12.70157 -12.53336 -12.44362 -12.40128 -12.07420 -12.00183 -11.91530 -11.78385 -11.55586 -11.48035 -11.32998 -10.74138 -10.49481 -9.77001 -9.37622 -9.23644 -8.17669 -6.32155 -0.36117 0.09202 0.77299 1.13644 1.25078 1.43307 1.45880 1.52151 2.26657 2.35311 2.54743 3.10531 3.77499 3.91495 3.96236 4.07170 4.18979 4.29430 4.59063 4.62486 4.76805 4.82630 4.87586 4.92302 4.93866 5.01195 5.06783 5.08320 5.20406 5.23822 5.27889 5.37663 5.44656 5.49828 5.54372 5.70798 5.92004 6.09160 6.60653 6.84648 7.31737 7.43589 8.85112 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.007508 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.399488 B = 3728.672896 C = 5912.539825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.120 4.120 5 C 0.129 3.871 6 N -0.583 5.583 7 C 0.222 3.778 8 C -0.546 4.546 9 H 0.047 0.953 10 C 0.035 3.965 11 N -0.906 5.906 12 Si 0.945 3.055 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.569 3.431 17 O -0.570 6.570 18 C -0.161 4.161 19 C -0.127 4.127 20 C -0.230 4.230 21 S 0.263 5.737 22 C -0.151 4.151 23 Cl 0.001 6.999 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.270 0.730 38 H 0.187 0.813 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -2.053 -8.142 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C -0.187 4.187 4 C -0.178 4.178 5 C 0.006 3.994 6 N -0.312 5.312 7 C 0.102 3.898 8 C -0.585 4.585 9 H 0.066 0.934 10 C -0.167 4.167 11 N -0.544 5.544 12 Si 0.771 3.229 13 H -0.202 1.202 14 H -0.204 1.204 15 H -0.199 1.199 16 C 0.357 3.643 17 O -0.452 6.452 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.365 4.365 21 S 0.527 5.473 22 C -0.297 4.297 23 Cl 0.030 6.970 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.203 0.797 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.070 -3.217 -9.259 10.272 hybrid contribution 0.014 1.305 1.990 2.380 sum 3.084 -1.912 -7.269 8.125 Atomic orbital electron populations 1.21881 0.94410 1.01195 1.01654 1.20934 0.96031 0.96490 0.94675 1.21728 1.00982 0.93288 1.02667 1.21707 1.00419 0.98716 0.96937 1.21488 0.99174 0.80758 0.98019 1.47923 1.22813 1.07409 1.53053 1.20024 0.80552 0.97673 0.91542 1.21550 0.95249 1.47929 0.93748 0.93436 1.25467 0.94612 0.94628 1.01959 1.69986 1.00559 1.46571 1.37295 0.85806 0.77543 0.78647 0.80909 1.20246 1.20435 1.19861 1.17619 0.84380 0.84385 0.77920 1.90688 1.20274 1.81885 1.52396 1.20485 1.03042 0.96649 0.97941 1.22497 0.95901 0.95044 1.01967 1.25886 1.08131 1.00136 1.02329 1.82415 1.35555 1.06561 1.22799 1.25415 1.03508 1.02762 0.98034 1.98351 1.58315 1.93016 1.47364 0.92934 0.91540 0.94182 0.92490 0.91069 0.91997 0.95559 0.91789 0.93327 0.90917 0.91699 0.95294 0.92428 0.92079 0.79690 0.78780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.38 71.98 0.53 -3.76 16 2 C -0.08 -2.54 0.85 -52.18 -0.04 -2.58 16 3 C -0.13 -3.21 8.47 71.98 0.61 -2.60 16 4 C -0.12 -3.96 7.12 71.98 0.51 -3.45 16 5 C 0.13 4.87 4.61 86.38 0.40 5.27 16 6 N -0.58 -24.96 2.00 -830.44 -1.66 -26.63 16 7 C 0.22 10.32 3.86 85.64 0.33 10.65 16 8 C -0.55 -27.30 7.69 25.60 0.20 -27.10 16 9 H 0.05 2.48 7.81 -2.91 -0.02 2.45 16 10 C 0.04 1.76 5.21 84.65 0.44 2.20 16 11 N -0.91 -46.36 13.29 21.45 0.28 -46.07 16 12 Si 0.95 40.09 29.54 68.60 2.03 42.12 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 C 0.57 24.90 5.67 86.55 0.49 25.39 16 17 O -0.57 -26.00 13.49 -4.19 -0.06 -26.06 16 18 C -0.16 -6.52 5.62 -19.84 -0.11 -6.63 16 19 C -0.13 -5.00 7.96 22.70 0.18 -4.82 16 20 C -0.23 -7.10 11.11 66.65 0.74 -6.36 16 21 S 0.26 6.97 23.02 -56.49 -1.30 5.67 16 22 C -0.15 -5.25 6.85 67.35 0.46 -4.78 16 23 Cl 0.00 0.03 27.64 -2.72 -0.08 -0.05 16 24 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.48 5.90 -2.38 -0.01 1.46 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.97 6.63 -2.39 -0.02 0.95 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.71 7.34 -2.38 -0.02 1.70 16 33 H 0.07 2.79 8.06 -2.39 -0.02 2.77 16 34 H 0.06 2.53 7.38 -2.39 -0.02 2.51 16 35 H 0.03 1.41 5.88 -2.39 -0.01 1.40 16 36 H 0.06 2.77 4.02 -2.39 -0.01 2.76 16 37 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 38 H 0.19 8.45 3.69 -2.91 -0.01 8.44 16 39 H 0.20 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -56.06 334.62 5.02 -51.04 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.07 Total: 18.56 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.74 Total: -18.58 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.38 Total: -72.70 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.06 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.30 Total: 5.67 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -56.06 5.02 -51.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.908 kcal (2) G-P(sol) polarization free energy of solvation -56.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds