Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.46498 * 119.99874 * 274.99798 * 3 2 1 5 5 C 1.50703 * 109.46907 * 275.00275 * 4 3 2 6 6 H 1.08001 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99970 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00266 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47090 * 59.99813 * 9 7 5 11 11 H 1.48499 * 109.47376 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46868 * 300.00174 * 9 7 5 13 13 S 1.65595 * 119.99850 * 95.00088 * 3 2 1 14 14 O 1.42105 * 106.40149 * 203.53728 * 13 3 2 15 15 O 1.42098 * 106.40317 * 336.45602 * 13 3 2 16 16 C 1.76204 * 107.21987 * 89.99964 * 13 3 2 17 17 C 1.38146 * 120.00251 * 114.72445 * 16 13 3 18 18 C 1.38676 * 120.00131 * 179.77211 * 17 16 13 19 19 O 1.35981 * 120.00450 * 180.25001 * 18 17 16 20 20 C 1.42900 * 117.00374 * 180.27267 * 19 18 17 21 21 C 1.38726 * 119.99620 * 0.52157 * 18 17 16 22 22 C 1.38106 * 120.00327 * 359.72919 * 21 18 17 23 23 C 1.38681 * 119.99342 * 294.99603 * 16 13 3 24 24 O 1.35975 * 120.00417 * 359.97438 * 23 16 13 25 25 H 1.09005 * 109.47081 * 300.00493 * 1 2 3 26 26 H 1.09003 * 109.46581 * 60.00015 * 1 2 3 27 27 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46879 * 239.99339 * 2 1 3 29 29 H 1.09003 * 109.46581 * 119.99985 * 2 1 3 30 30 H 1.09001 * 109.47378 * 34.99890 * 4 3 2 31 31 H 1.09002 * 109.46925 * 155.00631 * 4 3 2 32 32 H 0.97003 * 120.00349 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.00165 * 359.97438 * 17 16 13 34 34 H 1.08995 * 109.47121 * 59.99813 * 20 19 18 35 35 H 1.08998 * 109.47460 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.46877 * 300.00122 * 20 19 18 37 37 H 1.08000 * 119.99562 * 179.70681 * 21 18 17 38 38 H 1.07991 * 120.00532 * 179.97438 * 22 21 18 39 39 H 0.96705 * 113.99506 * 89.99888 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1724 1.1115 -1.3835 7 6 3.8531 2.3611 -3.0843 8 7 3.0287 3.1868 -3.6910 9 14 5.5101 1.9651 -3.8506 10 1 5.6004 0.5053 -4.1074 11 1 5.6524 2.7033 -5.1312 12 1 6.5949 2.3723 -2.9218 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1998 15 8 1.6868 1.4415 2.4447 16 6 4.1170 1.7940 1.7320 17 6 5.0290 2.8316 1.7349 18 6 6.3700 2.5755 1.9783 19 8 7.2669 3.5976 1.9862 20 6 8.6326 3.2604 2.2379 21 6 6.7973 1.2759 2.2082 22 6 5.8864 0.2378 2.2001 23 6 4.5441 0.4948 1.9622 24 8 3.6472 -0.5272 1.9544 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3618 1.8096 -1.9453 31 1 2.0923 3.1802 -1.0756 32 1 3.2805 3.5894 -4.5369 33 1 4.6971 3.8427 1.5509 34 1 8.9832 2.5690 1.4717 35 1 9.2402 4.1650 2.2159 36 1 8.7161 2.7898 3.2175 37 1 7.8424 1.0759 2.3930 38 1 6.2191 -0.7739 2.3786 39 1 3.5206 -0.9327 1.0856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = -143.869102 kcal Electronic energy + Delta-G solvation = -25748.029237 eV Core-core repulsion = 21975.960125 eV Total energy + Delta-G solvation = -3772.069112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.38480 -39.70413 -38.30785 -37.74343 -36.96403 -36.82107 -34.68827 -32.53250 -31.54214 -30.41754 -28.50467 -28.04921 -25.04112 -24.38024 -23.61788 -23.23563 -20.35911 -19.78363 -19.03045 -18.60899 -18.27241 -17.81242 -17.16956 -17.06591 -16.79496 -16.47319 -16.31874 -15.52691 -15.25171 -15.03183 -14.75783 -14.66411 -14.11536 -13.79900 -13.66848 -13.62650 -13.45241 -13.34850 -13.14002 -13.01887 -12.81448 -12.75573 -12.64464 -12.40546 -12.20505 -12.14146 -12.02949 -11.75489 -11.53686 -11.35800 -10.58870 -10.51695 -9.80468 -9.23270 -8.16913 -6.30413 -0.59881 -0.31725 0.13208 1.40413 1.43113 1.49963 1.97250 2.20864 2.33670 2.42947 2.73142 3.00404 3.15017 3.39843 3.63872 3.86368 3.98879 4.12783 4.28929 4.37621 4.38556 4.45667 4.52325 4.65276 4.70071 4.73428 4.77115 4.99893 5.02215 5.05508 5.17783 5.28032 5.34267 5.44247 5.52444 5.74850 5.94916 6.09051 6.26178 6.50622 6.80340 7.39348 8.91168 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.008073 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.463506 B = 3467.679218 C = 5158.813513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.981 5.981 4 C 0.259 3.741 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.697 3.303 14 O -0.999 6.999 15 O -0.970 6.970 16 C -0.666 4.666 17 C -0.064 4.064 18 C 0.092 3.908 19 O -0.337 6.337 20 C 0.012 3.988 21 C -0.132 4.132 22 C -0.117 4.117 23 C 0.158 3.842 24 O -0.494 6.494 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -9.090 10.233 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.821 5.821 4 C 0.136 3.864 5 C -0.582 4.582 6 H 0.088 0.912 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.779 3.221 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.789 3.211 14 O -0.990 6.990 15 O -0.961 6.961 16 C -0.754 4.754 17 C -0.084 4.084 18 C 0.046 3.954 19 O -0.251 6.251 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.136 4.136 23 C 0.112 3.888 24 O -0.309 6.309 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.198 0.802 38 H 0.196 0.804 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 9.015 -8.194 11.137 16.506 hybrid contribution 1.239 0.053 -1.376 1.853 sum 10.254 -8.141 9.761 16.331 Atomic orbital electron populations 1.22196 0.95729 1.03528 1.01347 1.21681 0.95261 0.80923 1.04201 1.57278 1.78532 1.24560 1.21685 1.18803 0.96770 0.90945 0.79932 1.21780 1.02622 1.27828 1.05946 0.91212 1.25775 1.00618 0.94707 0.97641 1.70050 1.38016 1.30968 1.17609 0.85659 0.79853 0.79034 0.77508 1.18336 1.21220 1.19954 1.01492 0.74223 0.72624 0.72803 1.93488 1.86876 1.32776 1.85828 1.93524 1.70252 1.75370 1.56907 1.31014 1.26057 1.00874 1.17406 1.20034 0.91243 0.98969 0.98147 1.19076 0.89248 0.88553 0.98533 1.86114 1.19578 1.32622 1.86776 1.23483 0.77817 1.04772 1.02088 1.21799 1.02562 0.90230 1.00471 1.21647 0.90377 1.01761 0.99840 1.17869 0.89728 0.84893 0.96349 1.84939 1.60727 1.47567 1.37717 0.93641 0.93259 0.88602 0.88746 0.88220 0.95000 0.96572 0.92557 0.85098 0.91358 0.86257 0.90439 0.80189 0.80379 0.72929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.24 71.98 0.74 -4.28 16 2 C 0.10 3.28 5.32 86.38 0.46 3.74 16 3 N -0.98 -40.39 2.77 -519.84 -1.44 -41.83 16 4 C 0.26 13.06 5.44 85.63 0.47 13.52 16 5 C -0.54 -28.20 9.38 25.60 0.24 -27.96 16 6 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.01 0.66 5.46 84.66 0.46 1.12 16 8 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 9 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 S 2.70 115.62 5.24 -56.49 -0.30 115.33 16 14 O -1.00 -50.30 15.52 -128.00 -1.99 -52.29 16 15 O -0.97 -41.71 16.26 -122.87 -2.00 -43.71 16 16 C -0.67 -25.45 5.92 22.35 0.13 -25.32 16 17 C -0.06 -2.46 9.48 22.35 0.21 -2.25 16 18 C 0.09 2.88 6.69 22.49 0.15 3.03 16 19 O -0.34 -9.60 10.50 -93.34 -0.98 -10.58 16 20 C 0.01 0.19 9.81 113.37 1.11 1.31 16 21 C -0.13 -3.08 9.03 22.36 0.20 -2.88 16 22 C -0.12 -2.81 9.98 22.36 0.22 -2.59 16 23 C 0.16 4.94 6.65 22.49 0.15 5.08 16 24 O -0.49 -13.63 10.61 -83.79 -0.89 -14.52 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 29 H 0.10 2.69 4.33 -2.39 -0.01 2.68 16 30 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 31 H 0.02 0.93 6.91 -2.39 -0.02 0.92 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.13 5.44 7.33 -2.91 -0.02 5.42 16 34 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 37 H 0.18 2.50 6.29 -2.91 -0.02 2.48 16 38 H 0.18 2.77 8.06 -2.92 -0.02 2.75 16 39 H 0.41 8.39 6.98 -74.05 -0.52 7.88 16 Total: -1.00 -75.37 338.57 -0.16 -75.54 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.57 Total: 19.13 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.55 Total: -37.48 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -1.15 Total: -95.34 kcal Atomic # 8 Polarization: -115.24 SS G_CDS: -5.85 Total: -121.09 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 115.62 SS G_CDS: -0.30 Total: 115.33 kcal Total: -75.37 -0.16 -75.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.331 kcal (2) G-P(sol) polarization free energy of solvation -75.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds