Wall clock time and date at job start Tue Mar 31 2020 11:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35987 * 116.99782 * 2 1 4 4 C 1.38715 * 120.00441 * 359.97438 * 3 2 1 5 5 C 1.38104 * 120.00579 * 180.02562 * 4 3 2 6 6 C 1.38722 * 119.99592 * 359.97438 * 5 4 3 7 7 O 1.35987 * 119.99730 * 180.02562 * 6 5 4 8 8 C 1.38675 * 120.00113 * 0.02628 * 6 5 4 9 9 S 1.76202 * 119.99731 * 179.97438 * 8 6 5 10 10 O 1.42101 * 106.39976 * 181.45647 * 9 8 6 11 11 O 1.42101 * 106.40253 * 48.54335 * 9 8 6 12 12 N 1.65599 * 107.22092 * 295.00125 * 9 8 6 13 13 C 1.46505 * 119.99715 * 270.00136 * 12 9 8 14 14 C 1.46497 * 119.99944 * 90.00378 * 12 9 8 15 15 H 1.08996 * 109.47049 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47188 * 120.00026 * 14 12 9 17 17 C 1.50706 * 109.46582 * 239.99877 * 14 12 9 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 C 1.38147 * 119.99951 * 0.22585 * 8 6 5 26 26 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47351 * 300.00061 * 1 2 3 28 28 H 1.09007 * 109.47535 * 60.00084 * 1 2 3 29 29 H 1.08005 * 119.99391 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.00076 * 179.97438 * 5 4 3 31 31 H 0.96703 * 113.99951 * 270.02176 * 7 6 5 32 32 H 1.09005 * 109.46851 * 270.00240 * 13 12 9 33 33 H 1.08997 * 109.47129 * 29.99515 * 13 12 9 34 34 H 1.08993 * 109.46804 * 150.00155 * 13 12 9 35 35 H 1.09002 * 109.47153 * 299.99573 * 16 14 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 37 37 H 1.09004 * 109.47261 * 59.99745 * 16 14 12 38 38 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 39 39 H 1.08006 * 120.00245 * 179.72144 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 -0.0005 5 6 1.9177 3.6056 -0.0011 6 6 3.3030 3.6782 -0.0005 7 8 3.9203 4.8899 -0.0005 8 6 4.0583 2.5152 0.0000 9 16 5.8179 2.6075 0.0000 10 8 6.2900 1.2676 -0.0341 11 8 6.1713 3.5302 1.0212 12 7 6.2725 3.3002 -1.4338 13 6 6.5338 2.4580 -2.6038 14 6 6.4134 4.7550 -1.5323 15 1 6.1792 5.2087 -0.5693 16 6 7.8508 5.1028 -1.9245 17 6 5.4657 5.2817 -2.5791 18 1 4.8230 4.6007 -3.1173 19 6 5.4191 6.6329 -2.8494 20 7 6.2020 7.4620 -2.1943 21 14 4.2438 7.2858 -4.1463 22 1 2.8489 6.9478 -3.7654 23 1 4.3867 8.7605 -4.2463 24 1 4.5621 6.6681 -5.4588 25 6 3.4311 1.2843 -0.0047 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2122 2.3185 -0.0014 30 1 1.3295 4.5113 -0.0019 31 1 4.0989 5.2403 -0.8840 32 1 7.5856 2.1722 -2.6181 33 1 5.9147 1.5624 -2.5523 34 1 6.2956 3.0127 -3.5112 35 1 8.5363 4.7219 -1.1674 36 1 7.9554 6.1853 -1.9982 37 1 8.0846 4.6491 -2.8876 38 1 6.1694 8.4125 -2.3848 39 1 4.0194 0.3785 -0.0089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:47 Heat of formation + Delta-G solvation = -118.869312 kcal Electronic energy + Delta-G solvation = -25838.503953 eV Core-core repulsion = 22067.518913 eV Total energy + Delta-G solvation = -3770.985040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17439 -38.30238 -36.69824 -36.27058 -35.36511 -35.15999 -32.80923 -31.29916 -29.29223 -29.08464 -27.13389 -25.57806 -25.37883 -23.12267 -22.21552 -20.83686 -18.99292 -18.04969 -17.57099 -16.90614 -16.56175 -16.44807 -15.83646 -15.82280 -15.30634 -14.89805 -14.64818 -14.10545 -13.80952 -13.52473 -13.28496 -12.95159 -12.73323 -12.61142 -12.36102 -12.02077 -11.76920 -11.48518 -11.42921 -11.36707 -11.27192 -11.05785 -11.01407 -10.96490 -10.95140 -10.50498 -10.33187 -10.18783 -9.91035 -9.41668 -9.25595 -8.67124 -8.07417 -7.93576 -6.30352 -4.44306 0.83461 1.13450 1.42188 3.12128 3.19348 3.20386 3.21236 3.42520 3.76575 4.16974 4.33478 4.56338 4.71923 4.88773 4.93730 4.97397 4.99106 5.06330 5.27520 5.44504 5.59018 5.64909 5.93090 6.01890 6.16542 6.22740 6.29997 6.33410 6.54650 6.65016 6.82869 6.85867 7.06564 7.30805 7.41318 7.47115 7.67811 7.91487 8.08528 8.27881 8.64953 9.24027 10.71853 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.006106 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.410593 B = 4584.365371 C = 5695.120566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.080 3.920 4 C -0.140 4.140 5 C -0.138 4.138 6 C 0.202 3.798 7 O -0.495 6.495 8 C -0.673 4.673 9 S 2.690 3.310 10 O -0.977 6.977 11 O -0.944 6.944 12 N -0.981 5.981 13 C 0.103 3.897 14 C 0.256 3.744 15 H 0.075 0.925 16 C -0.144 4.144 17 C -0.553 4.553 18 H 0.067 0.933 19 C 0.072 3.928 20 N -0.867 5.867 21 Si 0.894 3.106 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.275 1.275 25 C -0.039 4.039 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.418 0.582 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.015 0.985 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.269 0.731 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -9.185 0.562 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.035 3.965 4 C -0.159 4.159 5 C -0.157 4.157 6 C 0.154 3.846 7 O -0.318 6.318 8 C -0.757 4.757 9 S 2.778 3.222 10 O -0.967 6.967 11 O -0.934 6.934 12 N -0.822 5.822 13 C -0.043 4.043 14 C 0.154 3.846 15 H 0.093 0.907 16 C -0.204 4.204 17 C -0.591 4.591 18 H 0.085 0.915 19 C -0.134 4.134 20 N -0.502 5.502 21 Si 0.721 3.279 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.200 1.200 25 C -0.059 4.059 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.289 0.711 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.711 -9.465 1.799 12.989 hybrid contribution -1.712 0.779 -1.626 2.487 sum -10.424 -8.686 0.173 13.570 Atomic orbital electron populations 1.23040 0.78736 1.03841 1.01227 1.86089 1.21043 1.26492 1.89479 1.18910 0.92264 0.84273 1.01102 1.21311 0.99996 0.91979 1.02621 1.21351 0.94145 0.97948 1.02285 1.17843 0.90142 0.84822 0.91759 1.84884 1.78804 1.30285 1.37875 1.31530 1.29142 0.97776 1.17255 1.02072 0.73409 0.72845 0.73861 1.93501 1.78913 1.37189 1.87116 1.93590 1.81353 1.63418 1.55010 1.57472 1.81224 1.17323 1.26188 1.21258 0.99873 0.93119 0.90036 1.18981 0.94364 0.72221 0.99080 0.90716 1.22049 0.96217 1.04208 0.97925 1.21467 1.22621 0.92483 1.22570 0.91525 1.25007 0.95694 0.96857 0.95852 1.69878 1.36659 1.03923 1.39772 0.86617 0.81080 0.78092 0.82069 1.20056 1.20946 1.20008 1.20004 0.91744 0.96829 0.97317 0.88281 0.92780 0.92731 0.84866 0.84414 0.71069 0.93487 0.92874 0.90061 0.96603 0.88894 0.94788 0.92031 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.18 10.50 -19.70 -0.21 -4.39 16 3 C 0.08 1.20 6.69 -39.24 -0.26 0.94 16 4 C -0.14 -1.92 9.03 -39.45 -0.36 -2.27 16 5 C -0.14 -2.17 9.98 -39.45 -0.39 -2.56 16 6 C 0.20 3.84 6.65 -39.24 -0.26 3.58 16 7 O -0.50 -10.49 10.84 -29.61 -0.32 -10.81 16 8 C -0.67 -12.74 5.92 -39.45 -0.23 -12.97 16 9 S 2.69 55.56 5.22 -107.50 -0.56 55.00 16 10 O -0.98 -20.34 16.04 -57.17 -0.92 -21.25 16 11 O -0.94 -22.44 15.86 -62.54 -0.99 -23.44 16 12 N -0.98 -19.99 3.06 -115.85 -0.35 -20.35 16 13 C 0.10 1.80 9.28 59.85 0.56 2.35 16 14 C 0.26 5.87 1.78 -69.08 -0.12 5.75 16 15 H 0.08 1.90 5.62 -51.93 -0.29 1.61 16 16 C -0.14 -3.27 8.97 37.16 0.33 -2.94 16 17 C -0.55 -12.74 5.52 -34.44 -0.19 -12.93 16 18 H 0.07 1.49 7.33 -52.49 -0.38 1.10 16 19 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 20 N -0.87 -21.80 11.32 55.43 0.63 -21.18 16 21 Si 0.89 18.64 29.54 -169.99 -5.02 13.61 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.04 -0.66 9.48 -39.45 -0.37 -1.04 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.40 7.66 -51.92 -0.40 0.01 16 29 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.42 8.93 5.26 45.56 0.24 9.17 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 34 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 38 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 39 H 0.15 2.38 7.33 -52.48 -0.38 2.00 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -29.23 328.62 -7.46 -36.69 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.26 Total: 10.43 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -0.41 Total: -19.26 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.27 Total: -41.52 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -2.44 Total: -59.89 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.56 Total: 55.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.23 -7.46 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.183 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds