Wall clock time and date at job start Tue Mar 31 2020 11:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35987 * 116.99782 * 2 1 4 4 C 1.38715 * 120.00441 * 359.97438 * 3 2 1 5 5 C 1.38104 * 120.00579 * 180.02562 * 4 3 2 6 6 C 1.38722 * 119.99592 * 359.97438 * 5 4 3 7 7 O 1.35987 * 119.99730 * 180.02562 * 6 5 4 8 8 C 1.38675 * 120.00113 * 0.02628 * 6 5 4 9 9 S 1.76202 * 119.99731 * 179.97438 * 8 6 5 10 10 O 1.42101 * 106.39976 * 181.45647 * 9 8 6 11 11 O 1.42101 * 106.40253 * 48.54335 * 9 8 6 12 12 N 1.65599 * 107.22092 * 295.00125 * 9 8 6 13 13 C 1.46505 * 119.99715 * 270.00136 * 12 9 8 14 14 C 1.46497 * 119.99944 * 90.00378 * 12 9 8 15 15 H 1.08996 * 109.47049 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47188 * 120.00026 * 14 12 9 17 17 C 1.50706 * 109.46582 * 239.99877 * 14 12 9 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 C 1.38147 * 119.99951 * 0.22585 * 8 6 5 26 26 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47351 * 300.00061 * 1 2 3 28 28 H 1.09007 * 109.47535 * 60.00084 * 1 2 3 29 29 H 1.08005 * 119.99391 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.00076 * 179.97438 * 5 4 3 31 31 H 0.96703 * 113.99951 * 270.02176 * 7 6 5 32 32 H 1.09005 * 109.46851 * 270.00240 * 13 12 9 33 33 H 1.08997 * 109.47129 * 29.99515 * 13 12 9 34 34 H 1.08993 * 109.46804 * 150.00155 * 13 12 9 35 35 H 1.09002 * 109.47153 * 299.99573 * 16 14 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 37 37 H 1.09004 * 109.47261 * 59.99745 * 16 14 12 38 38 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 39 39 H 1.08006 * 120.00245 * 179.72144 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 -0.0005 5 6 1.9177 3.6056 -0.0011 6 6 3.3030 3.6782 -0.0005 7 8 3.9203 4.8899 -0.0005 8 6 4.0583 2.5152 0.0000 9 16 5.8179 2.6075 0.0000 10 8 6.2900 1.2676 -0.0341 11 8 6.1713 3.5302 1.0212 12 7 6.2725 3.3002 -1.4338 13 6 6.5338 2.4580 -2.6038 14 6 6.4134 4.7550 -1.5323 15 1 6.1792 5.2087 -0.5693 16 6 7.8508 5.1028 -1.9245 17 6 5.4657 5.2817 -2.5791 18 1 4.8230 4.6007 -3.1173 19 6 5.4191 6.6329 -2.8494 20 7 6.2020 7.4620 -2.1943 21 14 4.2438 7.2858 -4.1463 22 1 2.8489 6.9478 -3.7654 23 1 4.3867 8.7605 -4.2463 24 1 4.5621 6.6681 -5.4588 25 6 3.4311 1.2843 -0.0047 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2122 2.3185 -0.0014 30 1 1.3295 4.5113 -0.0019 31 1 4.0989 5.2403 -0.8840 32 1 7.5856 2.1722 -2.6181 33 1 5.9147 1.5624 -2.5523 34 1 6.2956 3.0127 -3.5112 35 1 8.5363 4.7219 -1.1674 36 1 7.9554 6.1853 -1.9982 37 1 8.0846 4.6491 -2.8876 38 1 6.1694 8.4125 -2.3848 39 1 4.0194 0.3785 -0.0089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:47 Heat of formation + Delta-G solvation = -140.155895 kcal Electronic energy + Delta-G solvation = -25839.427008 eV Core-core repulsion = 22067.518913 eV Total energy + Delta-G solvation = -3771.908095 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33972 -39.57811 -38.31619 -37.93123 -36.91616 -36.71198 -34.57060 -32.53651 -30.94809 -30.33382 -27.99540 -27.30811 -27.01820 -24.37125 -23.48211 -22.59498 -20.31165 -19.57208 -18.95619 -18.50330 -18.27368 -17.75096 -17.18987 -16.94194 -16.74104 -16.30444 -16.27439 -15.31652 -15.21011 -14.95562 -14.86781 -14.43673 -14.09338 -13.76460 -13.59850 -13.41818 -13.37910 -13.17791 -13.11458 -12.96952 -12.71909 -12.68226 -12.57343 -12.36309 -12.18317 -12.11074 -11.98100 -11.87359 -11.34964 -11.14499 -10.55411 -10.49398 -9.68067 -9.19303 -8.11506 -6.30365 -0.58804 -0.32660 0.15299 1.48458 1.51639 1.57652 2.00389 2.23131 2.35413 2.45255 2.75951 3.11679 3.27166 3.41416 3.64609 3.87133 4.11727 4.15724 4.29807 4.41161 4.42248 4.67781 4.72833 4.74650 4.77632 4.83338 5.02264 5.03442 5.04457 5.08515 5.18006 5.28232 5.35260 5.60255 5.72378 5.86994 6.09139 6.26750 6.29346 6.73318 6.83348 7.40670 8.91016 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.006106 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.410593 B = 4584.365371 C = 5695.120566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.091 3.909 4 C -0.123 4.123 5 C -0.134 4.134 6 C 0.165 3.835 7 O -0.514 6.514 8 C -0.681 4.681 9 S 2.697 3.303 10 O -0.985 6.985 11 O -0.985 6.985 12 N -0.985 5.985 13 C 0.095 3.905 14 C 0.262 3.738 15 H 0.044 0.956 16 C -0.140 4.140 17 C -0.546 4.546 18 H 0.074 0.926 19 C 0.033 3.967 20 N -0.900 5.900 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.272 1.272 25 C -0.057 4.057 26 H 0.123 0.877 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.180 0.820 30 H 0.161 0.839 31 H 0.412 0.588 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.268 0.732 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -10.712 -0.439 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.045 3.955 4 C -0.142 4.142 5 C -0.153 4.153 6 C 0.118 3.882 7 O -0.336 6.336 8 C -0.769 4.769 9 S 2.789 3.211 10 O -0.975 6.975 11 O -0.976 6.976 12 N -0.825 5.825 13 C -0.050 4.050 14 C 0.158 3.842 15 H 0.062 0.938 16 C -0.200 4.200 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.170 4.170 20 N -0.537 5.537 21 Si 0.779 3.221 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.198 1.198 25 C -0.077 4.077 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.197 0.803 30 H 0.178 0.822 31 H 0.281 0.719 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.778 -11.032 0.800 16.158 hybrid contribution -0.904 1.073 -1.268 1.891 sum -12.682 -9.959 -0.467 16.132 Atomic orbital electron populations 1.23477 0.75907 1.06116 1.02706 1.86100 1.23893 1.25391 1.88885 1.18961 0.91712 0.85624 0.99226 1.21749 1.02134 0.90369 0.99941 1.21623 0.92718 0.99913 1.01074 1.18205 0.91696 0.83905 0.94381 1.84884 1.79549 1.31553 1.37571 1.31069 1.27432 0.98913 1.19437 1.01483 0.74167 0.72116 0.73318 1.93475 1.79784 1.37084 1.87156 1.93533 1.82761 1.64524 1.56736 1.57326 1.81837 1.16497 1.26884 1.21485 1.01077 0.93446 0.88961 1.18705 0.94342 0.73503 0.97636 0.93805 1.21975 0.96463 1.03012 0.98564 1.21571 1.22289 0.92598 1.22050 0.90791 1.25647 0.96902 0.97096 0.97404 1.70007 1.38348 1.03978 1.41341 0.85689 0.79702 0.76945 0.79804 1.19075 1.21626 1.19757 1.20102 0.93268 0.96044 0.98275 0.85919 0.91210 0.91159 0.80315 0.82152 0.71903 0.92458 0.90855 0.89766 0.96457 0.90810 0.93621 0.92294 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.46 10.50 -93.40 -0.98 -8.44 16 3 C 0.09 2.46 6.69 22.49 0.15 2.61 16 4 C -0.12 -2.87 9.03 22.35 0.20 -2.67 16 5 C -0.13 -3.88 9.98 22.35 0.22 -3.66 16 6 C 0.17 6.23 6.65 22.49 0.15 6.38 16 7 O -0.51 -22.39 10.84 -83.93 -0.91 -23.30 16 8 C -0.68 -25.74 5.92 22.35 0.13 -25.61 16 9 S 2.70 114.10 5.22 -56.49 -0.30 113.80 16 10 O -0.98 -41.36 16.04 -128.00 -2.05 -43.41 16 11 O -0.99 -49.13 15.86 -122.87 -1.95 -51.08 16 12 N -0.99 -40.67 3.06 -520.44 -1.59 -42.26 16 13 C 0.10 3.25 9.28 127.77 1.19 4.44 16 14 C 0.26 12.32 1.78 44.25 0.08 12.40 16 15 H 0.04 2.35 5.62 -2.39 -0.01 2.34 16 16 C -0.14 -6.53 8.97 71.98 0.65 -5.89 16 17 C -0.55 -25.32 5.52 25.60 0.14 -25.18 16 18 H 0.07 3.26 7.33 -2.91 -0.02 3.24 16 19 C 0.03 1.55 5.29 84.66 0.45 2.00 16 20 N -0.90 -46.42 11.32 21.45 0.24 -46.17 16 21 Si 0.95 37.94 29.54 68.60 2.03 39.96 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 C -0.06 -1.86 9.48 22.35 0.21 -1.65 16 26 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 0.65 7.66 -2.38 -0.02 0.64 16 28 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 29 H 0.18 2.49 6.29 -2.91 -0.02 2.47 16 30 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.41 18.18 5.26 -74.06 -0.39 17.79 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.07 2.17 7.79 -2.39 -0.02 2.15 16 34 H 0.08 2.81 7.02 -2.39 -0.02 2.79 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 37 H 0.04 1.95 7.67 -2.38 -0.02 1.93 16 38 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 39 H 0.15 4.74 7.33 -2.91 -0.02 4.72 16 Total: -1.00 -64.66 328.62 -0.13 -64.79 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.70 Total: 31.70 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.68 Total: -35.58 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -1.35 Total: -88.44 kcal Atomic # 8 Polarization: -120.34 SS G_CDS: -5.89 Total: -126.24 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 114.10 SS G_CDS: -0.30 Total: 113.80 kcal Total: -64.66 -0.13 -64.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.371 kcal (2) G-P(sol) polarization free energy of solvation -64.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds