Wall clock time and date at job start Tue Mar 31 2020 10:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.09000 * 109.46898 * 54.76545 * 3 2 1 5 5 C 1.50698 * 109.47160 * 174.76635 * 3 2 1 6 6 H 1.07991 * 120.00451 * 120.00124 * 5 3 2 7 7 C 1.37881 * 119.99781 * 300.00431 * 5 3 2 8 8 N 1.31510 * 120.00357 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99980 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47118 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47183 * 119.99796 * 9 7 5 12 12 H 1.48505 * 109.47168 * 240.00081 * 9 7 5 13 13 N 1.46501 * 109.47339 * 294.76889 * 3 2 1 14 14 S 1.65596 * 120.00032 * 118.92046 * 13 3 2 15 15 O 1.42101 * 106.40052 * 176.65020 * 14 13 3 16 16 O 1.42096 * 106.40080 * 309.56743 * 14 13 3 17 17 C 1.76195 * 107.22094 * 63.10816 * 14 13 3 18 18 C 1.38158 * 120.00171 * 244.78011 * 17 14 13 19 19 C 1.38675 * 120.00130 * 179.77103 * 18 17 14 20 20 O 1.35979 * 120.00205 * 180.25271 * 19 18 17 21 21 C 1.42898 * 117.00109 * 180.27422 * 20 19 18 22 22 C 1.38722 * 119.99818 * 0.52232 * 19 18 17 23 23 C 1.38109 * 120.00118 * 359.72844 * 22 19 18 24 24 C 1.38679 * 120.00308 * 65.05477 * 17 14 13 25 25 O 1.35988 * 119.99494 * 359.97269 * 24 17 14 26 26 H 1.08997 * 109.46912 * 299.98623 * 1 2 3 27 27 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47237 * 59.98488 * 1 2 3 29 29 H 1.08993 * 109.47003 * 120.00117 * 2 1 3 30 30 H 1.09004 * 109.46849 * 240.00502 * 2 1 3 31 31 H 0.96998 * 120.00268 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99401 * 298.91635 * 13 3 2 33 33 H 1.07994 * 119.99659 * 359.97438 * 18 17 14 34 34 H 1.08998 * 109.47400 * 59.99899 * 21 20 19 35 35 H 1.09002 * 109.47277 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47145 * 299.99680 * 21 20 19 37 37 H 1.08002 * 119.99910 * 179.70213 * 22 19 18 38 38 H 1.07999 * 120.00068 * 179.97438 * 23 22 19 39 39 H 0.96704 * 113.99424 * 95.15789 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5414 1.4445 0.1296 6 1 4.1497 1.8880 -0.6447 7 6 4.1385 0.8800 1.2368 8 7 3.3978 0.3403 2.1800 9 14 5.9996 0.8818 1.3972 10 1 6.5981 1.5444 0.2105 11 1 6.3899 1.6191 2.6257 12 1 6.4905 -0.5172 1.4824 13 7 1.6572 2.0959 -1.2541 14 16 0.6755 3.4292 -1.2271 15 8 0.5570 3.8675 -2.5736 16 8 -0.4427 3.0878 -0.4196 17 6 1.5427 4.6980 -0.3654 18 6 1.0556 5.1738 0.8367 19 6 1.7406 6.1691 1.5173 20 8 1.2639 6.6338 2.7030 21 6 2.0173 7.6637 3.3462 22 6 2.9092 6.6947 0.9857 23 6 3.3934 6.2227 -0.2186 24 6 2.7111 5.2232 -0.8966 25 8 3.1879 4.7584 -2.0823 26 1 -0.3633 0.5136 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5141 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.8179 -0.0565 2.9591 32 1 1.9789 1.7474 -2.1003 33 1 0.1431 4.7683 1.2480 34 1 2.0749 8.5340 2.6925 35 1 1.5287 7.9420 4.2800 36 1 3.0231 7.3004 3.5571 37 1 3.4402 7.4732 1.5134 38 1 4.3030 6.6321 -0.6326 39 1 2.9185 5.2843 -2.8478 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601392155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:52 Heat of formation + Delta-G solvation = -130.170742 kcal Electronic energy + Delta-G solvation = -25617.522441 eV Core-core repulsion = 21846.047335 eV Total energy + Delta-G solvation = -3771.475106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20015 -38.43683 -36.71876 -35.85398 -35.63028 -35.25645 -32.15445 -31.32029 -30.45445 -29.26643 -27.13546 -26.57272 -23.20972 -22.93393 -22.33548 -20.05061 -19.27514 -18.30501 -18.04333 -17.08730 -16.71891 -16.14027 -15.85014 -15.77830 -15.34926 -15.11020 -14.58744 -14.11893 -13.81334 -13.64059 -13.09703 -12.95506 -12.87359 -12.59747 -12.40753 -11.73000 -11.66082 -11.50369 -11.44578 -11.40293 -11.23710 -11.18119 -10.97670 -10.83032 -10.80205 -10.31452 -10.11116 -9.88800 -9.63058 -9.41795 -9.29302 -8.45738 -8.15393 -8.01506 -6.06746 -4.13986 0.83068 1.16659 1.37414 3.24209 3.25147 3.33600 3.38111 3.45423 3.75484 4.23177 4.34746 4.39753 4.71448 4.87404 4.97343 5.04978 5.07672 5.23062 5.35238 5.45168 5.55115 5.91246 5.96430 6.20336 6.24808 6.31294 6.41891 6.44298 6.49655 6.72181 6.97870 7.17634 7.31118 7.32042 7.68101 7.73857 7.74056 7.95704 8.08915 8.33751 8.91569 9.52096 10.97802 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.007018 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.349295 B = 3988.551064 C = 5058.470146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.045 0.955 5 C -0.522 4.522 6 H 0.066 0.934 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 N -1.089 6.089 14 S 2.700 3.300 15 O -0.982 6.982 16 O -0.962 6.962 17 C -0.651 4.651 18 C -0.033 4.033 19 C 0.095 3.905 20 O -0.314 6.314 21 C 0.026 3.974 22 C -0.144 4.144 23 C -0.131 4.131 24 C 0.183 3.817 25 O -0.486 6.486 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.038 0.962 31 H 0.262 0.738 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 12.666 -2.122 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.063 0.937 5 C -0.562 4.562 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.850 5.850 14 S 2.787 3.213 15 O -0.972 6.972 16 O -0.952 6.952 17 C -0.735 4.735 18 C -0.053 4.053 19 C 0.049 3.951 20 O -0.227 6.227 21 C -0.069 4.069 22 C -0.163 4.163 23 C -0.151 4.151 24 C 0.137 3.863 25 O -0.298 6.298 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.171 0.829 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.133 12.261 -1.656 12.555 hybrid contribution 2.059 0.700 0.073 2.175 sum -0.074 12.960 -1.583 13.057 Atomic orbital electron populations 1.21822 0.98525 0.99044 1.01006 1.21900 0.92431 0.99460 1.02891 1.18576 0.94897 0.90156 0.78826 0.93681 1.21534 0.91281 1.37694 1.05690 0.91546 1.24911 0.98181 0.95115 0.95666 1.69873 1.34800 1.38475 1.09443 0.86519 0.85694 0.77708 0.77977 1.19702 1.21169 1.20953 1.55331 1.69850 1.43237 1.16572 1.01611 0.73781 0.73157 0.72776 1.93493 1.86653 1.82375 1.34724 1.93567 1.48056 1.82697 1.70888 1.31290 1.10008 1.21825 1.10374 1.20070 0.99820 0.93569 0.91795 1.18953 0.93812 0.95700 0.86616 1.86116 1.50676 1.53561 1.32372 1.23063 0.96975 0.89275 0.97586 1.21295 0.96191 1.01666 0.97133 1.21242 1.00580 0.97311 0.95938 1.17617 0.89562 0.91599 0.87542 1.84901 1.74482 1.55844 1.14529 0.93067 0.94878 0.94391 0.87871 0.94286 0.92772 0.75699 0.82881 0.92836 0.88158 0.92551 0.84759 0.84557 0.74493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.48 37.16 0.35 -2.72 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.28 6.72 2.25 -69.08 -0.16 6.56 16 4 H 0.05 1.18 7.74 -51.93 -0.40 0.78 16 5 C -0.52 -13.64 8.84 -34.44 -0.30 -13.94 16 6 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.32 11.29 55.43 0.63 -23.70 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -1.09 -22.34 4.83 -5.88 -0.03 -22.37 16 14 S 2.70 52.74 5.17 -107.50 -0.56 52.18 16 15 O -0.98 -19.26 17.29 -62.55 -1.08 -20.34 16 16 O -0.96 -20.57 15.92 -57.17 -0.91 -21.48 16 17 C -0.65 -12.07 5.86 -39.45 -0.23 -12.30 16 18 C -0.03 -0.59 9.48 -39.45 -0.37 -0.97 16 19 C 0.09 1.52 6.69 -39.24 -0.26 1.25 16 20 O -0.31 -4.55 10.50 -19.68 -0.21 -4.76 16 21 C 0.03 0.25 9.81 101.05 0.99 1.24 16 22 C -0.14 -2.00 9.03 -39.45 -0.36 -2.35 16 23 C -0.13 -1.91 9.98 -39.45 -0.39 -2.31 16 24 C 0.18 3.10 6.65 -39.24 -0.26 2.84 16 25 O -0.49 -7.62 12.28 -29.65 -0.36 -7.99 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.76 7.36 -51.92 -0.38 0.38 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.41 7.63 8.96 -34.47 -0.31 7.32 16 33 H 0.15 2.70 7.33 -52.49 -0.38 2.31 16 34 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 37 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 38 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.40 4.32 9.06 45.56 0.41 4.74 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -32.57 341.72 -7.78 -40.35 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.16 Total: 11.29 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -1.23 Total: -24.19 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.60 Total: -46.07 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -2.56 Total: -54.56 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 52.74 SS G_CDS: -0.56 Total: 52.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.57 -7.78 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601392155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.820 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds