Wall clock time and date at job start Tue Mar 31 2020 10:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.09000 * 109.46898 * 54.76545 * 3 2 1 5 5 C 1.50698 * 109.47160 * 174.76635 * 3 2 1 6 6 H 1.07991 * 120.00451 * 120.00124 * 5 3 2 7 7 C 1.37881 * 119.99781 * 300.00431 * 5 3 2 8 8 N 1.31510 * 120.00357 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99980 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47118 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47183 * 119.99796 * 9 7 5 12 12 H 1.48505 * 109.47168 * 240.00081 * 9 7 5 13 13 N 1.46501 * 109.47339 * 294.76889 * 3 2 1 14 14 S 1.65596 * 120.00032 * 118.92046 * 13 3 2 15 15 O 1.42101 * 106.40052 * 176.65020 * 14 13 3 16 16 O 1.42096 * 106.40080 * 309.56743 * 14 13 3 17 17 C 1.76195 * 107.22094 * 63.10816 * 14 13 3 18 18 C 1.38158 * 120.00171 * 244.78011 * 17 14 13 19 19 C 1.38675 * 120.00130 * 179.77103 * 18 17 14 20 20 O 1.35979 * 120.00205 * 180.25271 * 19 18 17 21 21 C 1.42898 * 117.00109 * 180.27422 * 20 19 18 22 22 C 1.38722 * 119.99818 * 0.52232 * 19 18 17 23 23 C 1.38109 * 120.00118 * 359.72844 * 22 19 18 24 24 C 1.38679 * 120.00308 * 65.05477 * 17 14 13 25 25 O 1.35988 * 119.99494 * 359.97269 * 24 17 14 26 26 H 1.08997 * 109.46912 * 299.98623 * 1 2 3 27 27 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47237 * 59.98488 * 1 2 3 29 29 H 1.08993 * 109.47003 * 120.00117 * 2 1 3 30 30 H 1.09004 * 109.46849 * 240.00502 * 2 1 3 31 31 H 0.96998 * 120.00268 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99401 * 298.91635 * 13 3 2 33 33 H 1.07994 * 119.99659 * 359.97438 * 18 17 14 34 34 H 1.08998 * 109.47400 * 59.99899 * 21 20 19 35 35 H 1.09002 * 109.47277 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47145 * 299.99680 * 21 20 19 37 37 H 1.08002 * 119.99910 * 179.70213 * 22 19 18 38 38 H 1.07999 * 120.00068 * 179.97438 * 23 22 19 39 39 H 0.96704 * 113.99424 * 95.15789 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5414 1.4445 0.1296 6 1 4.1497 1.8880 -0.6447 7 6 4.1385 0.8800 1.2368 8 7 3.3978 0.3403 2.1800 9 14 5.9996 0.8818 1.3972 10 1 6.5981 1.5444 0.2105 11 1 6.3899 1.6191 2.6257 12 1 6.4905 -0.5172 1.4824 13 7 1.6572 2.0959 -1.2541 14 16 0.6755 3.4292 -1.2271 15 8 0.5570 3.8675 -2.5736 16 8 -0.4427 3.0878 -0.4196 17 6 1.5427 4.6980 -0.3654 18 6 1.0556 5.1738 0.8367 19 6 1.7406 6.1691 1.5173 20 8 1.2639 6.6338 2.7030 21 6 2.0173 7.6637 3.3462 22 6 2.9092 6.6947 0.9857 23 6 3.3934 6.2227 -0.2186 24 6 2.7111 5.2232 -0.8966 25 8 3.1879 4.7584 -2.0823 26 1 -0.3633 0.5136 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5141 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.8179 -0.0565 2.9591 32 1 1.9789 1.7474 -2.1003 33 1 0.1431 4.7683 1.2480 34 1 2.0749 8.5340 2.6925 35 1 1.5287 7.9420 4.2800 36 1 3.0231 7.3004 3.5571 37 1 3.4402 7.4732 1.5134 38 1 4.3030 6.6321 -0.6326 39 1 2.9185 5.2843 -2.8478 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601392155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:51 Heat of formation + Delta-G solvation = -155.624998 kcal Electronic energy + Delta-G solvation = -25618.626221 eV Core-core repulsion = 21846.047335 eV Total energy + Delta-G solvation = -3772.578886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.33883 -39.57548 -38.31728 -37.60306 -36.92886 -36.81578 -34.11905 -32.52256 -32.20864 -30.38864 -28.52113 -28.01838 -24.85037 -24.41665 -23.53659 -21.89646 -20.66587 -19.70112 -19.25444 -18.80575 -18.16227 -17.68948 -17.17844 -16.99772 -16.77647 -16.44516 -16.21188 -15.47689 -15.21549 -14.98016 -14.83582 -14.67502 -14.09753 -13.67058 -13.51255 -13.47105 -13.39656 -13.12416 -13.06596 -13.04537 -12.70663 -12.64903 -12.57352 -12.37767 -12.07811 -11.97981 -11.77019 -11.50792 -11.45534 -11.25478 -10.53229 -10.45718 -9.94573 -9.20099 -8.07921 -6.21428 -0.53326 -0.25719 0.17165 1.41100 1.44489 1.55092 2.10499 2.24527 2.32066 2.47454 2.82859 3.08421 3.19223 3.51922 3.67086 3.88149 4.14461 4.30415 4.39135 4.39641 4.50508 4.63113 4.67419 4.70303 4.73188 4.76842 4.93156 5.03182 5.07475 5.15621 5.37781 5.38925 5.48991 5.71030 5.82286 6.09641 6.21333 6.29251 6.49228 6.70325 6.89223 7.47334 8.95808 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.007018 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.349295 B = 3988.551064 C = 5058.470146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.288 3.712 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.280 1.280 13 N -1.089 6.089 14 S 2.713 3.287 15 O -0.985 6.985 16 O -0.988 6.988 17 C -0.672 4.672 18 C -0.065 4.065 19 C 0.089 3.911 20 O -0.334 6.334 21 C 0.013 3.987 22 C -0.132 4.132 23 C -0.128 4.128 24 C 0.170 3.830 25 O -0.496 6.496 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.417 0.583 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.064 0.936 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 14.346 -2.289 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.182 3.818 4 H 0.035 0.965 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.850 5.850 14 S 2.802 3.198 15 O -0.975 6.975 16 O -0.978 6.978 17 C -0.759 4.759 18 C -0.085 4.085 19 C 0.043 3.957 20 O -0.249 6.249 21 C -0.081 4.081 22 C -0.150 4.150 23 C -0.147 4.147 24 C 0.123 3.877 25 O -0.311 6.311 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.252 0.748 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.194 0.806 38 H 0.190 0.810 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -0.366 13.930 -1.864 14.059 hybrid contribution 1.503 0.302 0.159 1.541 sum 1.137 14.233 -1.705 14.379 Atomic orbital electron populations 1.21742 0.96939 1.00504 1.00561 1.21797 0.93876 0.98798 1.02031 1.18257 0.93884 0.90376 0.79268 0.96491 1.21746 0.92286 1.37377 1.05585 0.91908 1.25608 1.02020 0.94981 0.95503 1.69996 1.36284 1.39104 1.09837 0.85614 0.81072 0.77734 0.77866 1.19242 1.21011 1.20576 1.55146 1.69866 1.44109 1.15837 1.00990 0.73260 0.73018 0.72503 1.93477 1.86732 1.82298 1.34990 1.93526 1.49605 1.83305 1.71376 1.30982 1.11421 1.22331 1.11168 1.20106 1.00362 0.95393 0.92610 1.19057 0.94252 0.95270 0.87109 1.86100 1.51986 1.54952 1.31833 1.23466 0.97225 0.88791 0.98629 1.21774 0.95035 1.01554 0.96662 1.21669 1.01192 0.96113 0.95734 1.17878 0.89305 0.92269 0.88202 1.84850 1.74358 1.56824 1.15032 0.94561 0.92433 0.93764 0.90313 0.93435 0.92768 0.74817 0.84262 0.90468 0.86094 0.91755 0.80552 0.81027 0.72341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.48 71.98 0.68 -5.24 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.73 16 3 C 0.29 14.10 2.25 44.24 0.10 14.20 16 4 H 0.02 0.94 7.74 -2.39 -0.02 0.92 16 5 C -0.53 -27.83 8.84 25.60 0.23 -27.60 16 6 H 0.06 3.28 7.81 -2.92 -0.02 3.25 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -50.72 11.29 21.45 0.24 -50.48 16 9 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 N -1.09 -45.32 4.83 -172.52 -0.83 -46.15 16 14 S 2.71 108.31 5.17 -56.49 -0.29 108.02 16 15 O -0.98 -38.68 17.29 -122.86 -2.12 -40.80 16 16 O -0.99 -43.98 15.92 -128.00 -2.04 -46.01 16 17 C -0.67 -25.23 5.86 22.36 0.13 -25.10 16 18 C -0.06 -2.39 9.48 22.36 0.21 -2.18 16 19 C 0.09 2.77 6.69 22.49 0.15 2.92 16 20 O -0.33 -9.34 10.50 -93.32 -0.98 -10.32 16 21 C 0.01 0.21 9.81 113.37 1.11 1.32 16 22 C -0.13 -3.25 9.03 22.35 0.20 -3.05 16 23 C -0.13 -3.35 9.98 22.35 0.22 -3.13 16 24 C 0.17 5.57 6.65 22.49 0.15 5.72 16 25 O -0.50 -14.89 12.28 -83.91 -1.03 -15.92 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.78 7.36 -2.38 -0.02 1.76 16 29 H 0.08 4.13 5.95 -2.39 -0.01 4.12 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.42 15.61 8.96 -96.75 -0.87 14.74 16 33 H 0.14 5.30 7.33 -2.91 -0.02 5.28 16 34 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 37 H 0.18 2.76 6.29 -2.91 -0.02 2.74 16 38 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.42 8.41 9.06 -74.05 -0.67 7.74 16 Total: -1.00 -70.50 341.72 -1.66 -72.16 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.44 Total: 31.51 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 3.80 Total: -46.43 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -0.59 Total: -96.63 kcal Atomic # 8 Polarization: -106.88 SS G_CDS: -6.17 Total: -113.06 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 108.31 SS G_CDS: -0.29 Total: 108.02 kcal Total: -70.50 -1.66 -72.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601392155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.464 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds