Wall clock time and date at job start Tue Mar 31 2020 10:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46759 * 2 1 4 4 C 1.50694 * 109.47432 * 119.99940 * 2 1 3 5 5 H 1.08002 * 120.00122 * 125.41304 * 4 2 1 6 6 C 1.37880 * 120.00413 * 305.41753 * 4 2 1 7 7 N 1.31513 * 120.00156 * 150.62760 * 6 4 2 8 8 Si 1.86804 * 119.99409 * 330.89997 * 6 4 2 9 9 H 1.48497 * 109.46694 * 179.72466 * 8 6 4 10 10 H 1.48501 * 109.46927 * 299.72380 * 8 6 4 11 11 H 1.48495 * 109.47142 * 59.72761 * 8 6 4 12 12 C 1.53000 * 109.47135 * 240.00620 * 2 1 3 13 13 S 1.81400 * 109.47353 * 59.99639 * 12 2 1 14 14 O 1.42106 * 110.54306 * 291.62607 * 13 12 2 15 15 O 1.42099 * 110.54154 * 68.37646 * 13 12 2 16 16 N 1.65594 * 104.44941 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00299 * 65.00141 * 16 13 12 18 18 H 1.09006 * 115.54408 * 359.32618 * 17 16 13 19 19 C 1.53001 * 117.50305 * 213.62388 * 17 16 13 20 20 C 1.52998 * 117.50437 * 144.99835 * 17 16 13 21 21 H 1.08997 * 117.49766 * 359.97438 * 20 17 16 22 22 C 1.52999 * 117.50072 * 214.98219 * 20 17 16 23 23 F 1.39899 * 109.47193 * 59.99985 * 22 20 17 24 24 F 1.39904 * 109.47341 * 179.97438 * 22 20 17 25 25 F 1.39903 * 109.47058 * 299.99850 * 22 20 17 26 26 H 1.08995 * 109.47189 * 292.49108 * 1 2 3 27 27 H 1.09002 * 109.47362 * 52.48980 * 1 2 3 28 28 H 1.08997 * 109.46590 * 172.49438 * 1 2 3 29 29 H 1.09002 * 109.46871 * 183.53655 * 3 2 1 30 30 H 1.08992 * 109.47447 * 303.53503 * 3 2 1 31 31 H 1.09000 * 109.47109 * 63.53842 * 3 2 1 32 32 H 0.96995 * 120.00065 * 355.23609 * 7 6 4 33 33 H 1.09000 * 109.46988 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47030 * 299.99536 * 12 2 1 35 35 H 0.97003 * 120.00209 * 244.99988 * 16 13 12 36 36 H 1.08999 * 117.49441 * 359.97438 * 19 17 16 37 37 H 1.08998 * 117.50183 * 145.01583 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.7234 -1.5347 1.1337 6 6 1.6099 -0.3080 2.4797 7 7 1.5369 -1.1799 3.4615 8 14 1.1339 1.4740 2.7754 9 1 0.7119 1.6455 4.1888 10 1 2.2998 2.3505 2.4970 11 1 0.0115 1.8424 1.8756 12 6 2.0400 -0.7211 -1.2493 13 16 1.4353 0.1341 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0529 -0.7405 -3.9936 17 6 1.6232 -2.1250 -4.2056 18 1 0.9038 -2.5097 -3.4826 19 6 2.6533 -3.1062 -4.7685 20 6 1.5037 -2.6144 -5.6502 21 1 1.7444 -1.9062 -6.4430 22 6 0.3839 -3.6068 -5.9695 23 9 -0.8534 -3.0252 -5.6728 24 9 0.4286 -3.9392 -7.3278 25 9 0.5522 -4.7632 -5.2002 26 1 -0.3633 0.3931 0.9495 27 1 -0.3634 0.6257 -0.8152 28 1 -0.3632 -1.0189 -0.1342 29 1 3.1281 1.4432 -0.0634 30 1 1.6258 1.9744 -0.8565 31 1 1.7293 1.9377 0.9200 32 1 1.7134 -2.1182 3.2910 33 1 3.1300 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2494 35 1 2.6993 -0.3362 -4.5934 36 1 3.6507 -2.7215 -4.9816 37 1 2.6119 -4.1367 -4.4160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601520761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:08 Heat of formation + Delta-G solvation = -191.504028 kcal Electronic energy + Delta-G solvation = -25535.454468 eV Core-core repulsion = 21219.463010 eV Total energy + Delta-G solvation = -4315.991457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.29377 -47.85242 -47.74693 -38.49597 -36.79954 -36.70679 -35.60246 -32.72692 -32.06226 -27.42213 -27.04356 -26.39510 -24.58069 -22.66864 -21.96962 -20.13759 -19.22498 -18.67771 -18.54780 -18.12382 -17.25774 -16.85599 -16.72021 -15.68340 -15.14941 -14.78536 -14.67525 -14.65362 -14.21787 -14.06415 -13.93830 -13.84054 -13.47685 -13.33566 -13.17052 -12.82735 -12.54565 -12.46890 -12.07948 -12.06265 -11.94508 -11.71528 -11.56000 -11.21275 -11.14444 -11.01941 -10.60569 -10.22999 -9.99688 -9.97666 -9.45309 -9.07635 -8.98282 -8.20570 -6.61466 -4.18784 0.51011 2.40686 2.80352 2.87380 3.32801 3.38246 3.54472 3.59058 3.66053 3.87978 4.08755 4.23299 4.40481 4.41862 4.49129 4.52860 4.78622 5.01761 5.22010 5.32606 5.40259 5.44461 5.70769 5.95962 6.16859 6.27579 6.39843 6.46942 6.64876 6.74950 6.84010 7.12589 7.30361 7.96108 8.24645 8.75053 9.43645 10.74174 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.003920 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.473831 B = 7141.437309 C = 7568.364971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.060 3.940 3 C -0.180 4.180 4 C -0.604 4.604 5 H 0.062 0.938 6 C 0.047 3.953 7 N -0.882 5.882 8 Si 1.037 2.963 9 H -0.295 1.295 10 H -0.283 1.283 11 H -0.273 1.273 12 C -0.568 4.568 13 S 2.584 3.416 14 O -0.954 6.954 15 O -0.958 6.958 16 N -1.096 6.096 17 C 0.126 3.874 18 H 0.149 0.851 19 C -0.157 4.157 20 C -0.243 4.243 21 H 0.150 0.850 22 C 0.485 3.515 23 F -0.174 7.174 24 F -0.181 7.181 25 F -0.180 7.180 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.273 0.727 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.416 0.584 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -4.227 -18.468 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 C -0.237 4.237 4 C -0.642 4.642 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.513 5.513 8 Si 0.869 3.131 9 H -0.223 1.223 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.702 4.702 13 S 2.683 3.317 14 O -0.944 6.944 15 O -0.948 6.948 16 N -0.848 5.848 17 C 0.015 3.985 18 H 0.166 0.834 19 C -0.196 4.196 20 C -0.265 4.265 21 H 0.168 0.832 22 C 0.430 3.570 23 F -0.155 7.155 24 F -0.162 7.162 25 F -0.162 7.162 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.250 0.750 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.876 -2.487 -17.285 17.485 hybrid contribution 1.059 -1.601 -1.455 2.409 sum 1.935 -4.088 -18.740 19.279 Atomic orbital electron populations 1.22640 0.97005 1.01523 1.01749 1.18202 0.92437 0.91611 0.92080 1.22781 1.02156 0.98120 1.00667 1.21553 1.32831 1.19841 0.89963 0.91941 1.25675 0.93251 1.04721 0.92536 1.70861 1.40436 1.03972 1.36038 0.84379 0.77186 0.76534 0.74959 1.22304 1.21048 1.19998 1.30390 1.11791 1.12798 1.15210 1.06037 0.75123 0.74815 0.75758 1.93591 1.29365 1.86188 1.85286 1.93580 1.78110 1.37467 1.85681 1.55584 1.59886 1.21743 1.47538 1.21337 1.00546 0.82901 0.93673 0.83364 1.23733 0.94833 1.01475 0.99552 1.24004 0.99143 1.03326 1.00018 0.83209 1.19467 0.82917 0.80393 0.74180 1.93252 1.45320 1.83997 1.92944 1.93187 1.96569 1.93217 1.33266 1.93177 1.95385 1.52141 1.75485 0.91398 0.94332 0.92507 0.91962 0.93734 0.92846 0.91747 0.85635 0.85818 0.75030 0.86186 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 7.38 37.16 0.27 -3.54 16 2 C 0.06 1.34 0.52 -155.66 -0.08 1.26 16 3 C -0.18 -3.93 7.33 37.16 0.27 -3.66 16 4 C -0.60 -15.75 8.42 -34.44 -0.29 -16.04 16 5 H 0.06 1.71 7.99 -52.49 -0.42 1.29 16 6 C 0.05 1.28 5.05 -17.82 -0.09 1.19 16 7 N -0.88 -25.68 13.70 55.43 0.76 -24.92 16 8 Si 1.04 24.83 23.47 -169.99 -3.99 20.84 16 9 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.40 6.72 56.52 0.38 -6.03 16 11 H -0.27 -6.08 5.78 56.52 0.33 -5.75 16 12 C -0.57 -9.87 5.01 37.16 0.19 -9.68 16 13 S 2.58 41.59 4.47 -107.50 -0.48 41.11 16 14 O -0.95 -17.94 15.60 -57.54 -0.90 -18.84 16 15 O -0.96 -17.52 15.77 -57.54 -0.91 -18.43 16 16 N -1.10 -12.19 5.93 -4.89 -0.03 -12.21 16 17 C 0.13 1.26 5.99 -67.93 -0.41 0.85 16 18 H 0.15 1.52 8.11 -51.93 -0.42 1.10 16 19 C -0.16 -1.11 9.85 -26.73 -0.26 -1.37 16 20 C -0.24 -2.07 5.82 -90.62 -0.53 -2.60 16 21 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 22 C 0.48 4.92 3.36 37.16 0.12 5.05 16 23 F -0.17 -2.14 17.27 2.25 0.04 -2.10 16 24 F -0.18 -1.84 17.32 2.25 0.04 -1.80 16 25 F -0.18 -1.85 15.89 2.25 0.04 -1.82 16 26 H 0.07 1.57 4.46 -51.93 -0.23 1.33 16 27 H 0.04 0.79 6.02 -51.93 -0.31 0.48 16 28 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.90 5.72 -51.93 -0.30 0.60 16 31 H 0.05 1.19 2.28 -51.93 -0.12 1.08 16 32 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 33 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 35 H 0.42 3.56 8.92 -34.47 -0.31 3.26 16 36 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.12 0.79 7.22 -51.93 -0.37 0.42 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -32.24 316.04 -5.74 -37.97 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.27 Total: 3.98 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -0.80 Total: -28.54 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.73 Total: -37.13 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.80 Total: -37.26 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.11 Total: -5.72 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -3.99 Total: 20.84 kcal Atomic # 16 Polarization: 41.59 SS G_CDS: -0.48 Total: 41.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.24 -5.74 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601520761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.533 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds