Wall clock time and date at job start Tue Mar 31 2020 10:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46759 * 2 1 4 4 C 1.50694 * 109.47432 * 119.99940 * 2 1 3 5 5 H 1.08002 * 120.00122 * 125.41304 * 4 2 1 6 6 C 1.37880 * 120.00413 * 305.41753 * 4 2 1 7 7 N 1.31513 * 120.00156 * 150.62760 * 6 4 2 8 8 Si 1.86804 * 119.99409 * 330.89997 * 6 4 2 9 9 H 1.48497 * 109.46694 * 179.72466 * 8 6 4 10 10 H 1.48501 * 109.46927 * 299.72380 * 8 6 4 11 11 H 1.48495 * 109.47142 * 59.72761 * 8 6 4 12 12 C 1.53000 * 109.47135 * 240.00620 * 2 1 3 13 13 S 1.81400 * 109.47353 * 59.99639 * 12 2 1 14 14 O 1.42106 * 110.54306 * 291.62607 * 13 12 2 15 15 O 1.42099 * 110.54154 * 68.37646 * 13 12 2 16 16 N 1.65594 * 104.44941 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00299 * 65.00141 * 16 13 12 18 18 H 1.09006 * 115.54408 * 359.32618 * 17 16 13 19 19 C 1.53001 * 117.50305 * 213.62388 * 17 16 13 20 20 C 1.52998 * 117.50437 * 144.99835 * 17 16 13 21 21 H 1.08997 * 117.49766 * 359.97438 * 20 17 16 22 22 C 1.52999 * 117.50072 * 214.98219 * 20 17 16 23 23 F 1.39899 * 109.47193 * 59.99985 * 22 20 17 24 24 F 1.39904 * 109.47341 * 179.97438 * 22 20 17 25 25 F 1.39903 * 109.47058 * 299.99850 * 22 20 17 26 26 H 1.08995 * 109.47189 * 292.49108 * 1 2 3 27 27 H 1.09002 * 109.47362 * 52.48980 * 1 2 3 28 28 H 1.08997 * 109.46590 * 172.49438 * 1 2 3 29 29 H 1.09002 * 109.46871 * 183.53655 * 3 2 1 30 30 H 1.08992 * 109.47447 * 303.53503 * 3 2 1 31 31 H 1.09000 * 109.47109 * 63.53842 * 3 2 1 32 32 H 0.96995 * 120.00065 * 355.23609 * 7 6 4 33 33 H 1.09000 * 109.46988 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47030 * 299.99536 * 12 2 1 35 35 H 0.97003 * 120.00209 * 244.99988 * 16 13 12 36 36 H 1.08999 * 117.49441 * 359.97438 * 19 17 16 37 37 H 1.08998 * 117.50183 * 145.01583 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.7234 -1.5347 1.1337 6 6 1.6099 -0.3080 2.4797 7 7 1.5369 -1.1799 3.4615 8 14 1.1339 1.4740 2.7754 9 1 0.7119 1.6455 4.1888 10 1 2.2998 2.3505 2.4970 11 1 0.0115 1.8424 1.8756 12 6 2.0400 -0.7211 -1.2493 13 16 1.4353 0.1341 -2.7304 14 8 0.0279 -0.0182 -2.8544 15 8 2.0479 1.4102 -2.8543 16 7 2.0529 -0.7405 -3.9936 17 6 1.6232 -2.1250 -4.2056 18 1 0.9038 -2.5097 -3.4826 19 6 2.6533 -3.1062 -4.7685 20 6 1.5037 -2.6144 -5.6502 21 1 1.7444 -1.9062 -6.4430 22 6 0.3839 -3.6068 -5.9695 23 9 -0.8534 -3.0252 -5.6728 24 9 0.4286 -3.9392 -7.3278 25 9 0.5522 -4.7632 -5.2002 26 1 -0.3633 0.3931 0.9495 27 1 -0.3634 0.6257 -0.8152 28 1 -0.3632 -1.0189 -0.1342 29 1 3.1281 1.4432 -0.0634 30 1 1.6258 1.9744 -0.8565 31 1 1.7293 1.9377 0.9200 32 1 1.7134 -2.1182 3.2910 33 1 3.1300 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2494 35 1 2.6993 -0.3362 -4.5934 36 1 3.6507 -2.7215 -4.9816 37 1 2.6119 -4.1367 -4.4160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601520761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:07 Heat of formation + Delta-G solvation = -215.335500 kcal Electronic energy + Delta-G solvation = -25536.487878 eV Core-core repulsion = 21219.463010 eV Total energy + Delta-G solvation = -4317.024868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.10508 -48.64515 -48.60147 -39.23104 -38.42864 -38.15672 -36.99851 -34.11572 -33.60774 -28.91193 -28.12626 -27.79434 -26.59579 -23.39217 -22.68697 -21.68177 -20.56534 -19.54120 -19.39823 -19.20843 -18.85381 -18.19086 -17.62986 -17.05262 -16.56992 -16.32460 -15.52701 -15.49238 -15.12136 -15.04422 -14.96998 -14.88464 -14.76470 -14.70911 -14.50774 -14.17537 -14.03840 -13.91367 -13.42105 -13.16141 -13.13317 -13.06636 -12.77783 -12.67164 -12.65946 -12.28178 -11.98655 -11.87272 -11.76195 -11.60634 -10.98809 -10.79082 -10.32697 -10.23526 -8.74038 -6.31048 -0.76667 1.43900 1.46469 1.54282 1.69418 1.82271 2.18990 2.45047 2.70733 2.79468 2.92657 2.95574 3.22341 3.28106 3.53367 3.69040 3.72419 3.81804 4.01715 4.13192 4.28647 4.54096 4.61256 4.68936 4.72651 4.76674 4.85372 4.97547 5.02368 5.15991 5.42179 5.56284 5.96099 6.01657 6.09996 6.60898 7.37142 8.60246 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.003920 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.473831 B = 7141.437309 C = 7568.364971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.047 3.953 3 C -0.186 4.186 4 C -0.597 4.597 5 H 0.039 0.961 6 C 0.001 3.999 7 N -0.920 5.920 8 Si 1.060 2.940 9 H -0.305 1.305 10 H -0.262 1.262 11 H -0.249 1.249 12 C -0.579 4.579 13 S 2.615 3.385 14 O -0.982 6.982 15 O -0.978 6.978 16 N -1.078 6.078 17 C 0.091 3.909 18 H 0.141 0.859 19 C -0.130 4.130 20 C -0.237 4.237 21 H 0.170 0.830 22 C 0.480 3.520 23 F -0.190 7.190 24 F -0.181 7.181 25 F -0.183 7.183 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.261 0.739 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.431 0.569 36 H 0.147 0.853 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 -3.685 -20.776 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.044 3.956 3 C -0.243 4.243 4 C -0.635 4.635 5 H 0.057 0.943 6 C -0.201 4.201 7 N -0.553 5.553 8 Si 0.887 3.113 9 H -0.233 1.233 10 H -0.188 1.188 11 H -0.175 1.175 12 C -0.711 4.711 13 S 2.712 3.288 14 O -0.972 6.972 15 O -0.968 6.968 16 N -0.835 5.835 17 C -0.018 4.018 18 H 0.158 0.842 19 C -0.169 4.169 20 C -0.259 4.259 21 H 0.188 0.812 22 C 0.426 3.574 23 F -0.172 7.172 24 F -0.163 7.163 25 F -0.164 7.164 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.269 0.731 36 H 0.165 0.835 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.805 -1.942 -19.608 19.786 hybrid contribution 0.804 -1.899 -0.860 2.235 sum 2.609 -3.842 -20.467 20.987 Atomic orbital electron populations 1.22646 0.97144 1.01905 1.01574 1.18177 0.92426 0.92277 0.92686 1.22806 1.02949 0.97569 1.00989 1.21748 1.31304 1.18817 0.91658 0.94290 1.26706 0.93379 1.07085 0.92921 1.70962 1.43623 1.03680 1.37068 0.84116 0.78674 0.73642 0.74846 1.23305 1.18820 1.17456 1.30387 1.13021 1.13253 1.14414 1.04811 0.74235 0.74168 0.75635 1.93560 1.31346 1.86578 1.85719 1.93547 1.78325 1.38944 1.86033 1.54958 1.60111 1.22258 1.46152 1.21542 1.02791 0.82629 0.94819 0.84182 1.23915 0.95220 1.01023 0.96745 1.24092 0.98993 1.03141 0.99662 0.81213 1.19770 0.82834 0.80698 0.74114 1.93220 1.46632 1.84266 1.93079 1.93185 1.96535 1.93257 1.33281 1.93172 1.95335 1.52388 1.75538 0.92712 0.92863 0.92414 0.91007 0.92243 0.93525 0.92941 0.83904 0.84656 0.73143 0.83543 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.60 7.38 71.98 0.53 -7.07 16 2 C 0.05 2.04 0.52 -52.93 -0.03 2.02 16 3 C -0.19 -7.72 7.33 71.98 0.53 -7.19 16 4 C -0.60 -31.20 8.42 25.60 0.22 -30.98 16 5 H 0.04 2.17 7.99 -2.91 -0.02 2.14 16 6 C 0.00 0.08 5.05 84.66 0.43 0.50 16 7 N -0.92 -54.94 13.70 21.45 0.29 -54.65 16 8 Si 1.06 49.46 23.47 68.60 1.61 51.07 16 9 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 10 H -0.26 -11.24 6.72 99.48 0.67 -10.57 16 11 H -0.25 -10.58 5.78 99.48 0.57 -10.01 16 12 C -0.58 -19.04 5.01 71.98 0.36 -18.68 16 13 S 2.62 78.07 4.47 -56.49 -0.25 77.82 16 14 O -0.98 -35.20 15.60 -127.65 -1.99 -37.19 16 15 O -0.98 -33.18 15.77 -127.65 -2.01 -35.19 16 16 N -1.08 -20.68 5.93 -169.38 -1.00 -21.69 16 17 C 0.09 1.58 5.99 44.99 0.27 1.85 16 18 H 0.14 2.65 8.11 -2.38 -0.02 2.63 16 19 C -0.13 -1.35 9.85 30.59 0.30 -1.05 16 20 C -0.24 -3.32 5.82 -10.80 -0.06 -3.38 16 21 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 22 C 0.48 8.86 3.36 71.98 0.24 9.11 16 23 F -0.19 -4.51 17.27 44.97 0.78 -3.73 16 24 F -0.18 -3.35 17.32 44.97 0.78 -2.57 16 25 F -0.18 -3.46 15.89 44.97 0.71 -2.74 16 26 H 0.05 2.48 4.46 -2.39 -0.01 2.47 16 27 H 0.05 2.12 6.02 -2.39 -0.01 2.11 16 28 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.06 2.27 5.72 -2.39 -0.01 2.25 16 31 H 0.05 1.98 2.28 -2.39 -0.01 1.98 16 32 H 0.26 15.57 8.73 -92.71 -0.81 14.76 16 33 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.14 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.43 5.77 8.92 -96.74 -0.86 4.91 16 36 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.13 1.23 7.22 -2.39 -0.02 1.21 16 Total: -1.00 -69.76 316.04 1.76 -68.00 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.06 Total: 15.76 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 2.78 Total: -54.88 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -0.71 Total: -76.34 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: -4.00 Total: -72.39 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 2.27 Total: -9.04 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.61 Total: 51.07 kcal Atomic # 16 Polarization: 78.07 SS G_CDS: -0.25 Total: 77.82 kcal Total: -69.76 1.76 -68.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601520761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.335 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds