Wall clock time and date at job start Tue Mar 31 2020 10:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31590 * 122.22852 * 2 1 4 4 C 1.29943 * 117.13700 * 180.26809 * 3 2 1 5 5 N 1.38895 * 125.36703 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00203 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99873 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47207 * 309.30398 * 8 6 5 10 10 C 1.53009 * 109.47070 * 69.29918 * 8 6 5 11 11 N 1.46895 * 109.47155 * 189.29655 * 8 6 5 12 12 C 1.46901 * 111.00047 * 167.23042 * 11 8 6 13 13 C 1.46901 * 111.00321 * 291.18633 * 11 8 6 14 14 S 1.76138 * 109.27084 * 0.02562 * 4 3 2 15 15 C 1.34652 * 122.23069 * 180.29355 * 2 1 3 16 16 S 1.76204 * 125.93068 * 359.74679 * 15 2 1 17 17 C 1.76196 * 100.00023 * 180.02562 * 16 15 2 18 18 H 1.08003 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.38428 * 120.00124 * 179.97438 * 17 16 15 20 20 N 1.31806 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46901 * 60.00780 * 21 19 17 23 23 H 1.48507 * 109.47187 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47598 * 300.00378 * 21 19 17 25 25 H 1.09004 * 109.46911 * 269.70592 * 1 2 3 26 26 H 1.08994 * 109.47193 * 29.70794 * 1 2 3 27 27 H 1.09000 * 109.46742 * 149.71160 * 1 2 3 28 28 H 0.97006 * 119.99438 * 0.03148 * 5 4 3 29 29 H 1.08997 * 109.46946 * 179.97438 * 10 8 6 30 30 H 1.08998 * 109.46720 * 299.99976 * 10 8 6 31 31 H 1.09000 * 109.46655 * 59.99652 * 10 8 6 32 32 H 1.08991 * 109.47299 * 65.59294 * 12 11 8 33 33 H 1.09001 * 109.46850 * 185.59419 * 12 11 8 34 34 H 1.08998 * 109.47066 * 305.59089 * 12 11 8 35 35 H 1.09005 * 109.46633 * 59.99859 * 13 11 8 36 36 H 1.08994 * 109.46911 * 179.97438 * 13 11 8 37 37 H 1.08998 * 109.47268 * 299.99997 * 13 11 8 38 38 H 0.97006 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0054 5 7 4.4044 2.0547 -0.0068 6 6 5.7298 1.8101 -0.0132 7 8 6.1355 0.6672 -0.0181 8 6 6.7076 2.9568 -0.0141 9 1 6.4447 3.6578 -0.8063 10 6 6.6563 3.6720 1.3375 11 7 8.0643 2.4432 -0.2451 12 6 8.9958 3.5365 -0.5533 13 6 8.5339 1.6603 0.9058 14 16 3.9346 -0.7099 -0.0121 15 6 2.2252 -1.1390 -0.0058 16 16 1.5697 -2.7746 -0.0079 17 6 3.0666 -3.7041 -0.0153 18 1 4.0188 -3.1943 -0.0167 19 6 3.0222 -5.0876 -0.0182 20 7 1.8602 -5.7097 -0.0160 21 14 4.6092 -6.0730 -0.0268 22 1 5.4037 -5.7422 1.1834 23 1 4.2912 -7.5236 -0.0294 24 1 5.3942 -5.7367 -1.2415 25 1 -0.3633 -0.0053 1.0277 26 1 -0.3633 0.8925 -0.5093 27 1 -0.3633 -0.8874 -0.5183 28 1 4.0799 2.9688 -0.0032 29 1 7.3638 4.5011 1.3370 30 1 5.6495 4.0530 1.5089 31 1 6.9191 2.9709 2.1297 32 1 9.1002 4.1816 0.3190 33 1 9.9686 3.1215 -0.8169 34 1 8.6096 4.1175 -1.3908 35 1 7.8637 0.8162 1.0688 36 1 9.5404 1.2917 0.7081 37 1 8.5458 2.2916 1.7942 38 1 1.8291 -6.6793 -0.0184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602088795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:30 Heat of formation + Delta-G solvation = 14.795431 kcal Electronic energy + Delta-G solvation = -21548.234908 eV Core-core repulsion = 18258.091629 eV Total energy + Delta-G solvation = -3290.143279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51004 -38.66521 -37.36599 -34.73975 -32.79728 -31.47325 -30.15064 -27.77463 -27.08783 -26.04636 -25.73300 -24.00379 -21.81874 -20.74309 -19.37112 -18.03357 -17.66133 -16.82902 -16.19494 -15.72405 -15.47660 -15.07968 -14.92759 -14.83134 -14.12531 -14.03263 -13.79258 -13.17493 -13.06598 -12.67011 -12.64941 -12.38943 -12.06005 -12.00270 -11.85395 -11.70154 -11.57612 -11.37478 -11.22409 -11.03544 -10.68772 -10.50394 -10.25371 -9.72578 -9.49056 -9.04428 -8.71720 -8.64775 -8.52827 -7.76855 -6.57482 -6.47482 -4.25225 1.42485 1.91543 2.49819 2.56211 2.80620 3.10493 3.14701 3.17240 3.37375 3.64018 3.76032 4.00724 4.43520 4.57963 4.69235 4.85099 4.97648 5.03169 5.06332 5.19577 5.25041 5.27897 5.34014 5.46294 5.58770 5.72649 5.99377 6.01667 6.20213 6.25085 6.47532 6.52315 6.63055 6.76668 7.00274 7.23831 7.35485 8.04636 8.06596 8.54749 8.91018 10.48281 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004270 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.244049 B = 6555.764288 C = 8298.129967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.190 3.810 5 N -0.616 5.616 6 C 0.511 3.489 7 O -0.487 6.487 8 C 0.073 3.927 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.524 5.524 12 C 0.024 3.976 13 C 0.010 3.990 14 S 0.201 5.799 15 C -0.252 4.252 16 S 0.147 5.853 17 C -0.556 4.556 18 H 0.088 0.912 19 C 0.083 3.917 20 N -0.864 5.864 21 Si 0.924 3.076 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.413 0.587 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 17.765 1.264 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.124 4.124 3 N -0.198 5.198 4 C -0.181 4.181 5 N -0.266 5.266 6 C 0.296 3.704 7 O -0.359 6.359 8 C -0.039 4.039 9 H 0.128 0.872 10 C -0.245 4.245 11 N -0.247 5.247 12 C -0.124 4.124 13 C -0.137 4.137 14 S 0.445 5.555 15 C -0.489 4.489 16 S 0.398 5.602 17 C -0.705 4.705 18 H 0.106 0.894 19 C -0.128 4.128 20 N -0.497 5.497 21 Si 0.749 3.251 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.250 0.750 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.501 15.799 0.841 17.961 hybrid contribution 1.194 1.014 0.661 1.700 sum 9.695 16.813 1.503 19.466 Atomic orbital electron populations 1.20113 0.88100 1.02083 1.01751 1.19025 0.96673 0.84618 1.12052 1.65813 1.02844 1.32382 1.18789 1.23767 0.89841 0.92947 1.11582 1.42394 1.04390 1.07983 1.71811 1.20659 0.81595 0.91398 0.76793 1.90655 1.76505 1.22355 1.46399 1.21518 0.89792 0.93511 0.99088 0.87167 1.22437 1.03608 1.01249 0.97208 1.61844 1.00070 1.22892 1.39934 1.22444 0.96827 0.92965 1.00163 1.22693 1.02082 0.98728 0.90224 1.85848 1.01692 0.95415 1.72528 1.28768 1.01377 1.06695 1.12047 1.83057 1.11016 0.84443 1.81697 1.23220 0.93573 0.94041 1.59670 0.89391 1.25015 0.98239 0.96649 0.92923 1.70007 1.24428 1.10359 1.44912 0.86090 0.81220 0.78075 0.79729 1.19227 1.20388 1.19182 0.91921 0.91963 0.91065 0.75034 0.91010 0.91028 0.91013 0.95324 0.90833 0.91281 0.88810 0.91360 0.95386 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.17 16 3 N -0.48 -9.57 10.55 -9.78 -0.10 -9.68 16 4 C 0.19 3.64 8.40 -87.19 -0.73 2.91 16 5 N -0.62 -8.85 5.40 -11.78 -0.06 -8.92 16 6 C 0.51 7.25 6.91 -10.99 -0.08 7.18 16 7 O -0.49 -8.85 11.68 5.56 0.06 -8.78 16 8 C 0.07 0.72 2.71 -68.86 -0.19 0.53 16 9 H 0.11 0.83 7.94 -51.93 -0.41 0.42 16 10 C -0.19 -1.41 8.37 37.16 0.31 -1.10 16 11 N -0.52 -5.64 4.73 -244.59 -1.16 -6.79 16 12 C 0.02 0.18 9.32 60.07 0.56 0.74 16 13 C 0.01 0.11 8.61 60.07 0.52 0.63 16 14 S 0.20 4.46 18.35 -107.50 -1.97 2.49 16 15 C -0.25 -5.87 6.67 29.46 0.20 -5.67 16 16 S 0.15 3.74 20.74 -107.50 -2.23 1.51 16 17 C -0.56 -15.30 9.26 30.80 0.29 -15.01 16 18 H 0.09 2.40 5.97 -52.48 -0.31 2.09 16 19 C 0.08 2.23 5.49 -17.49 -0.10 2.13 16 20 N -0.86 -23.99 13.22 55.47 0.73 -23.26 16 21 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 28 H 0.41 4.43 8.82 -40.82 -0.36 4.07 16 29 H 0.07 0.43 6.92 -51.93 -0.36 0.07 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.63 6.31 -51.93 -0.33 0.31 16 32 H 0.03 0.18 6.96 -51.93 -0.36 -0.18 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.44 7.99 -51.93 -0.42 0.03 16 35 H 0.09 1.31 5.81 -51.93 -0.30 1.01 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.26 6.20 -51.93 -0.32 -0.06 16 38 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -31.95 337.37 -8.90 -40.85 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.80 Total: 0.18 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.58 Total: -8.55 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.59 Total: -48.64 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -4.20 Total: 4.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.95 -8.90 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602088795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds