Wall clock time and date at job start Tue Mar 31 2020 10:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31590 * 122.22852 * 2 1 4 4 C 1.29943 * 117.13700 * 180.26809 * 3 2 1 5 5 N 1.38895 * 125.36703 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00203 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99873 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47207 * 309.30398 * 8 6 5 10 10 C 1.53009 * 109.47070 * 69.29918 * 8 6 5 11 11 N 1.46895 * 109.47155 * 189.29655 * 8 6 5 12 12 C 1.46901 * 111.00047 * 167.23042 * 11 8 6 13 13 C 1.46901 * 111.00321 * 291.18633 * 11 8 6 14 14 S 1.76138 * 109.27084 * 0.02562 * 4 3 2 15 15 C 1.34652 * 122.23069 * 180.29355 * 2 1 3 16 16 S 1.76204 * 125.93068 * 359.74679 * 15 2 1 17 17 C 1.76196 * 100.00023 * 180.02562 * 16 15 2 18 18 H 1.08003 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.38428 * 120.00124 * 179.97438 * 17 16 15 20 20 N 1.31806 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46901 * 60.00780 * 21 19 17 23 23 H 1.48507 * 109.47187 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47598 * 300.00378 * 21 19 17 25 25 H 1.09004 * 109.46911 * 269.70592 * 1 2 3 26 26 H 1.08994 * 109.47193 * 29.70794 * 1 2 3 27 27 H 1.09000 * 109.46742 * 149.71160 * 1 2 3 28 28 H 0.97006 * 119.99438 * 0.03148 * 5 4 3 29 29 H 1.08997 * 109.46946 * 179.97438 * 10 8 6 30 30 H 1.08998 * 109.46720 * 299.99976 * 10 8 6 31 31 H 1.09000 * 109.46655 * 59.99652 * 10 8 6 32 32 H 1.08991 * 109.47299 * 65.59294 * 12 11 8 33 33 H 1.09001 * 109.46850 * 185.59419 * 12 11 8 34 34 H 1.08998 * 109.47066 * 305.59089 * 12 11 8 35 35 H 1.09005 * 109.46633 * 59.99859 * 13 11 8 36 36 H 1.08994 * 109.46911 * 179.97438 * 13 11 8 37 37 H 1.08998 * 109.47268 * 299.99997 * 13 11 8 38 38 H 0.97006 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0054 5 7 4.4044 2.0547 -0.0068 6 6 5.7298 1.8101 -0.0132 7 8 6.1355 0.6672 -0.0181 8 6 6.7076 2.9568 -0.0141 9 1 6.4447 3.6578 -0.8063 10 6 6.6563 3.6720 1.3375 11 7 8.0643 2.4432 -0.2451 12 6 8.9958 3.5365 -0.5533 13 6 8.5339 1.6603 0.9058 14 16 3.9346 -0.7099 -0.0121 15 6 2.2252 -1.1390 -0.0058 16 16 1.5697 -2.7746 -0.0079 17 6 3.0666 -3.7041 -0.0153 18 1 4.0188 -3.1943 -0.0167 19 6 3.0222 -5.0876 -0.0182 20 7 1.8602 -5.7097 -0.0160 21 14 4.6092 -6.0730 -0.0268 22 1 5.4037 -5.7422 1.1834 23 1 4.2912 -7.5236 -0.0294 24 1 5.3942 -5.7367 -1.2415 25 1 -0.3633 -0.0053 1.0277 26 1 -0.3633 0.8925 -0.5093 27 1 -0.3633 -0.8874 -0.5183 28 1 4.0799 2.9688 -0.0032 29 1 7.3638 4.5011 1.3370 30 1 5.6495 4.0530 1.5089 31 1 6.9191 2.9709 2.1297 32 1 9.1002 4.1816 0.3190 33 1 9.9686 3.1215 -0.8169 34 1 8.6096 4.1175 -1.3908 35 1 7.8637 0.8162 1.0688 36 1 9.5404 1.2917 0.7081 37 1 8.5458 2.2916 1.7942 38 1 1.8291 -6.6793 -0.0184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602088795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:30 Heat of formation + Delta-G solvation = -8.047587 kcal Electronic energy + Delta-G solvation = -21549.225456 eV Core-core repulsion = 18258.091629 eV Total energy + Delta-G solvation = -3291.133827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69615 -40.24040 -38.31983 -36.12015 -34.81263 -32.55848 -31.36295 -28.77582 -28.49751 -27.71214 -26.86567 -25.25704 -23.02197 -22.09481 -20.82017 -19.64848 -19.15492 -18.13575 -17.52182 -17.06925 -16.89478 -16.70160 -16.19639 -15.73018 -15.55247 -15.33618 -14.94612 -14.69209 -14.36266 -13.88328 -13.59577 -13.40904 -13.26831 -13.22669 -13.07305 -12.95945 -12.87382 -12.80820 -12.48626 -12.31060 -12.20126 -12.04839 -12.03377 -11.32372 -11.13947 -10.72282 -10.46079 -10.44483 -9.50993 -9.29017 -8.57157 -8.35576 -6.29326 -0.20606 0.24116 0.84790 1.23766 1.27031 1.35875 1.39637 1.48322 1.64807 2.04064 2.15064 2.82019 2.97597 3.10210 3.40337 3.79433 3.88665 4.01462 4.33864 4.37581 4.44918 4.61576 4.64730 4.68441 4.70482 4.80404 4.85574 4.98015 5.04190 5.06466 5.15039 5.19702 5.29623 5.49260 5.80904 6.02021 6.02776 6.10942 6.83927 6.87528 6.90223 8.50480 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.004270 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.244049 B = 6555.764288 C = 8298.129967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.484 5.484 4 C 0.230 3.770 5 N -0.603 5.603 6 C 0.507 3.493 7 O -0.524 6.524 8 C 0.082 3.918 9 H 0.143 0.857 10 C -0.181 4.181 11 N -0.550 5.550 12 C 0.025 3.975 13 C 0.015 3.985 14 S 0.156 5.844 15 C -0.284 4.284 16 S 0.098 5.902 17 C -0.577 4.577 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.896 5.896 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.266 1.266 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.435 0.565 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 21.163 1.268 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.206 5.206 4 C -0.143 4.143 5 N -0.256 5.256 6 C 0.294 3.706 7 O -0.398 6.398 8 C -0.030 4.030 9 H 0.161 0.839 10 C -0.239 4.239 11 N -0.274 5.274 12 C -0.122 4.122 13 C -0.133 4.133 14 S 0.400 5.600 15 C -0.519 4.519 16 S 0.345 5.655 17 C -0.725 4.725 18 H 0.097 0.903 19 C -0.171 4.171 20 N -0.531 5.531 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.191 1.191 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.829 19.278 0.846 21.656 hybrid contribution 0.908 0.329 0.654 1.166 sum 10.737 19.607 1.500 22.405 Atomic orbital electron populations 1.20242 0.85696 1.03118 1.03070 1.19706 0.98413 0.84204 1.08096 1.66035 1.02670 1.31260 1.20606 1.24128 0.90191 0.93047 1.06909 1.42599 1.03964 1.07845 1.71159 1.21845 0.81670 0.92287 0.74768 1.90667 1.76920 1.24597 1.47608 1.21637 0.88073 0.91616 1.01643 0.83922 1.22429 1.05315 1.01255 0.94935 1.61782 1.01055 1.24663 1.39938 1.22502 0.96078 0.92214 1.01388 1.22556 1.01274 0.98078 0.91409 1.86066 1.02210 0.98297 1.73388 1.28580 1.01766 1.05975 1.15577 1.82856 1.11166 0.86290 1.85172 1.23412 0.93883 0.94866 1.60325 0.90252 1.25859 1.01339 0.97389 0.92486 1.70086 1.26140 1.10749 1.46087 0.85207 0.77375 0.77351 0.79589 1.18970 1.18699 1.19063 0.90329 0.89453 0.91445 0.72342 0.88492 0.89546 0.92608 0.93599 0.90838 0.89826 0.92445 0.90969 0.93657 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.24 0.71 -1.39 16 2 C 0.04 1.55 6.73 41.77 0.28 1.83 16 3 N -0.48 -18.52 10.55 -184.87 -1.95 -20.47 16 4 C 0.23 8.51 8.40 179.15 1.50 10.01 16 5 N -0.60 -15.75 5.40 -309.58 -1.67 -17.42 16 6 C 0.51 13.41 6.91 87.66 0.61 14.02 16 7 O -0.52 -18.96 11.68 -3.02 -0.04 -18.99 16 8 C 0.08 1.33 2.71 44.17 0.12 1.45 16 9 H 0.14 1.43 7.94 -2.39 -0.02 1.41 16 10 C -0.18 -2.01 8.37 71.99 0.60 -1.41 16 11 N -0.55 -10.44 4.73 -927.74 -4.39 -14.82 16 12 C 0.03 0.28 9.32 127.69 1.19 1.48 16 13 C 0.01 0.30 8.61 127.69 1.10 1.40 16 14 S 0.16 7.05 18.35 -56.49 -1.04 6.02 16 15 C -0.28 -13.51 6.67 67.00 0.45 -13.06 16 16 S 0.10 5.19 20.74 -56.49 -1.17 4.01 16 17 C -0.58 -33.12 9.26 67.87 0.63 -32.49 16 18 H 0.08 4.56 5.97 -2.91 -0.02 4.54 16 19 C 0.04 2.03 5.49 84.74 0.46 2.49 16 20 N -0.90 -51.37 13.22 21.59 0.29 -51.08 16 21 Si 0.98 43.81 29.55 68.60 2.03 45.84 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 27 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 28 H 0.44 7.61 8.82 -92.70 -0.82 6.80 16 29 H 0.10 0.66 6.92 -2.39 -0.02 0.65 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.83 6.31 -2.39 -0.02 0.81 16 32 H 0.05 0.37 6.96 -2.39 -0.02 0.36 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.71 7.99 -2.39 -0.02 0.69 16 35 H 0.06 1.62 5.81 -2.38 -0.01 1.61 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 0.75 6.20 -2.39 -0.01 0.74 16 38 H 0.28 14.91 8.32 -92.70 -0.77 14.13 16 Total: -1.00 -72.69 337.37 0.00 -72.69 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.28 Total: 9.90 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 7.66 Total: -15.67 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -7.72 Total: -103.80 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.04 Total: -18.99 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 12.24 SS G_CDS: -2.21 Total: 10.03 kcal Total: -72.69 0.00 -72.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602088795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.639 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds