Wall clock time and date at job start Tue Mar 31 2020 10:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 N 1.46504 * 109.46927 * 119.99532 * 2 1 3 5 5 C 1.46499 * 119.99869 * 304.65653 * 4 2 1 6 6 C 1.50702 * 109.46788 * 263.32490 * 5 4 2 7 7 H 1.08005 * 120.00113 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99589 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 119.99975 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47602 * 89.99978 * 10 8 6 12 12 H 1.48509 * 109.47095 * 209.99773 * 10 8 6 13 13 H 1.48501 * 109.47357 * 329.99659 * 10 8 6 14 14 C 1.34780 * 120.00264 * 124.64702 * 4 2 1 15 15 O 1.21699 * 119.99383 * 4.38996 * 14 4 2 16 16 C 1.46651 * 120.00058 * 184.38301 * 14 4 2 17 17 C 1.36552 * 125.98311 * 174.03970 * 16 14 4 18 18 C 1.40368 * 106.70221 * 180.02562 * 17 16 14 19 19 C 1.35126 * 107.11896 * 0.02562 * 18 17 16 20 20 S 1.76194 * 125.61735 * 180.02562 * 19 18 17 21 21 C 1.81400 * 104.45121 * 89.99868 * 20 19 18 22 22 O 1.42097 * 104.27740 * 206.07050 * 20 19 18 23 23 O 1.42106 * 104.27860 * 333.92933 * 20 19 18 24 24 O 1.33933 * 108.76629 * 359.97438 * 19 18 17 25 25 H 1.08994 * 109.47669 * 300.00527 * 1 2 3 26 26 H 1.09003 * 109.47057 * 60.00314 * 1 2 3 27 27 H 1.09005 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47669 * 239.99473 * 2 1 3 29 29 H 1.08999 * 109.46968 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46553 * 299.99533 * 3 2 1 31 31 H 1.09003 * 109.47413 * 59.99662 * 3 2 1 32 32 H 1.09002 * 109.47458 * 23.32704 * 5 4 2 33 33 H 1.09004 * 109.47001 * 143.32879 * 5 4 2 34 34 H 0.97001 * 119.99497 * 180.02562 * 9 8 6 35 35 H 1.07995 * 126.64906 * 0.27161 * 17 16 14 36 36 H 1.08004 * 126.43462 * 180.02562 * 18 17 16 37 37 H 1.09004 * 109.47065 * 60.00216 * 21 20 19 38 38 H 1.09004 * 109.47443 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47181 * 299.99940 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5822 -0.2521 2.5244 6 6 2.6191 0.6682 3.1151 7 1 3.5132 0.9034 2.5568 8 6 2.4257 1.2108 4.3678 9 7 3.3304 2.0144 4.8831 10 14 0.8789 0.8047 5.3330 11 1 1.1170 -0.4022 6.1650 12 1 0.5283 1.9499 6.2110 13 1 -0.2385 0.5435 4.3904 14 6 2.8685 -1.7292 1.0750 15 8 3.2932 -2.0430 -0.0215 16 6 3.2819 -2.4812 2.2643 17 6 4.0409 -3.6163 2.2721 18 6 4.1904 -3.9924 3.6161 19 6 3.5242 -3.0823 4.3603 20 16 3.3960 -3.0895 6.1176 21 6 4.8194 -2.1154 6.6793 22 8 2.1830 -2.3986 6.3833 23 8 3.5544 -4.4557 6.4749 24 8 2.9783 -2.1732 3.5422 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.6331 0.2770 2.4389 33 1 1.4569 -1.1209 3.1708 34 1 3.1945 2.3958 5.7645 35 1 4.4504 -4.1239 1.4113 36 1 4.7355 -4.8483 3.9859 37 1 4.7537 -1.1070 6.2707 38 1 4.8198 -2.0672 7.7683 39 1 5.7404 -2.5871 6.3366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609582124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:57 Heat of formation + Delta-G solvation = -71.367483 kcal Electronic energy + Delta-G solvation = -25922.754386 eV Core-core repulsion = 22153.829181 eV Total energy + Delta-G solvation = -3768.925206 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42546 -39.29619 -37.04201 -36.17327 -35.88157 -33.13666 -32.78484 -31.76349 -29.81401 -29.29579 -27.94926 -26.79671 -24.02756 -22.67646 -21.93533 -20.70087 -19.27221 -18.82910 -17.71624 -17.06528 -16.95337 -16.45764 -15.94544 -15.63065 -15.56887 -14.43175 -14.26674 -13.89133 -13.66444 -13.41811 -13.20358 -13.09549 -13.06430 -12.91864 -12.63863 -12.51671 -12.06813 -12.03621 -11.87435 -11.73856 -11.50542 -11.32025 -11.05446 -10.93331 -10.88112 -10.38908 -10.33267 -10.10395 -9.90471 -9.74250 -9.55496 -8.84841 -8.59902 -7.95125 -6.17875 -4.20259 0.02523 1.05701 2.22358 2.62918 3.10591 3.37861 3.38886 3.55237 3.60624 3.64946 3.91325 4.36200 4.44484 4.83791 4.89567 4.95436 5.12911 5.14181 5.30706 5.49168 5.56213 5.63017 5.73729 5.76379 5.81431 5.95054 6.01519 6.18881 6.26937 6.36856 6.46771 6.53934 6.75513 6.89203 6.94847 7.21741 7.44042 7.87127 8.33234 8.51747 8.83635 9.41810 10.92921 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.007262 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.978896 B = 3854.510922 C = 5214.242120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.154 4.154 4 N -0.568 5.568 5 C 0.195 3.805 6 C -0.533 4.533 7 H 0.077 0.923 8 C 0.085 3.915 9 N -0.894 5.894 10 Si 0.823 3.177 11 H -0.212 1.212 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.593 3.407 15 O -0.545 6.545 16 C 0.008 3.992 17 C -0.169 4.169 18 C -0.107 4.107 19 C -0.557 4.557 20 S 2.517 3.483 21 C -0.642 4.642 22 O -0.907 6.907 23 O -0.930 6.930 24 O -0.058 6.058 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -7.858 -0.104 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 C -0.212 4.212 4 N -0.297 5.297 5 C 0.074 3.926 6 C -0.571 4.571 7 H 0.095 0.905 8 C -0.118 4.118 9 N -0.532 5.532 10 Si 0.647 3.353 11 H -0.134 1.134 12 H -0.214 1.214 13 H -0.193 1.193 14 C 0.380 3.620 15 O -0.427 6.427 16 C -0.050 4.050 17 C -0.190 4.190 18 C -0.128 4.128 19 C -0.690 4.690 20 S 2.691 3.309 21 C -0.793 4.793 22 O -0.904 6.904 23 O -0.928 6.928 24 O 0.051 5.949 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.044 -8.006 0.025 8.006 hybrid contribution 0.055 0.235 0.027 0.243 sum 0.011 -7.771 0.051 7.771 Atomic orbital electron populations 1.22165 0.95186 1.01992 1.02588 1.21032 0.93761 0.93968 0.88022 1.22082 1.01812 0.95071 1.02243 1.48072 1.43259 1.29002 1.09380 1.20197 0.97339 0.96595 0.78440 1.21205 1.05990 1.27735 1.02173 0.90452 1.24728 0.96213 0.94026 0.96842 1.69913 1.34597 1.31354 1.17359 0.87634 0.84103 0.81216 0.82341 1.13429 1.21385 1.19329 1.16629 0.79631 0.80411 0.85339 1.90792 1.57041 1.69840 1.24984 1.22821 1.00656 0.97193 0.84319 1.21979 1.02086 0.96967 0.97968 1.21756 0.98966 0.99199 0.92884 1.35590 1.13050 1.00313 1.20000 1.05271 0.77727 0.75697 0.72243 1.30151 1.19322 1.17333 1.12481 1.93723 1.39913 1.74606 1.82179 1.93602 1.87493 1.31451 1.80207 1.84840 1.55085 1.40749 1.14222 0.91558 0.91617 0.92714 0.88985 0.92433 0.92768 0.90469 0.93816 0.93783 0.92505 0.81820 0.81572 0.83330 0.84712 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 37.15 0.34 -2.05 16 2 C 0.14 2.37 3.24 -67.93 -0.22 2.15 16 3 C -0.15 -2.66 8.92 37.16 0.33 -2.33 16 4 N -0.57 -11.73 2.38 -169.01 -0.40 -12.13 16 5 C 0.19 4.39 3.18 -5.19 -0.02 4.37 16 6 C -0.53 -13.70 8.08 -34.44 -0.28 -13.98 16 7 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 8 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 9 N -0.89 -25.02 13.96 55.43 0.77 -24.25 16 10 Si 0.82 19.63 27.47 -169.99 -4.67 14.96 16 11 H -0.21 -4.98 5.19 56.52 0.29 -4.68 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.59 12.51 7.58 -12.86 -0.10 12.42 16 15 O -0.55 -11.89 16.22 5.19 0.08 -11.80 16 16 C 0.01 0.16 6.75 -36.80 -0.25 -0.09 16 17 C -0.17 -2.82 10.63 -39.39 -0.42 -3.24 16 18 C -0.11 -1.62 10.51 -39.89 -0.42 -2.03 16 19 C -0.56 -9.52 6.97 29.63 0.21 -9.32 16 20 S 2.52 37.29 5.95 -107.50 -0.64 36.65 16 21 C -0.64 -7.18 10.80 101.05 1.09 -6.09 16 22 O -0.91 -17.22 16.11 -58.44 -0.94 -18.16 16 23 O -0.93 -14.26 17.70 -57.54 -1.02 -15.28 16 24 O -0.06 -1.21 6.62 5.01 0.03 -1.17 16 25 H 0.07 1.04 6.50 -51.93 -0.34 0.70 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.60 6.93 -51.93 -0.36 1.24 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.48 7.29 -51.93 -0.38 1.10 16 32 H 0.04 0.97 5.25 -51.93 -0.27 0.70 16 33 H 0.04 1.03 4.79 -51.93 -0.25 0.78 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.15 1.97 8.14 -51.92 -0.42 1.54 16 38 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 39 H 0.13 1.12 8.14 -51.92 -0.42 0.70 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -33.51 336.71 -6.63 -40.15 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.10 Total: 3.99 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 0.17 Total: -18.03 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.37 Total: -36.37 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.84 Total: -46.42 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Atomic # 16 Polarization: 37.29 SS G_CDS: -0.64 Total: 36.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.51 -6.63 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609582124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.221 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds