Wall clock time and date at job start Tue Mar 31 2020 10:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48491 * 109.47403 * 240.00193 * 3 2 1 5 5 H 1.48510 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47121 * 119.99911 * 3 2 1 7 7 C 1.37870 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47246 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99561 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00376 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99881 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00066 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47009 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46889 * 180.02562 * 16 15 14 18 18 S 1.81004 * 109.46708 * 179.97438 * 17 16 15 19 19 C 1.76207 * 99.99725 * 180.02562 * 18 17 16 20 20 N 1.29753 * 124.95007 * 359.95944 * 19 18 17 21 21 C 1.32096 * 116.85141 * 180.02562 * 20 19 18 22 22 C 1.33335 * 114.58980 * 359.97438 * 21 20 19 23 23 S 1.70961 * 124.94985 * 180.02562 * 19 18 17 24 24 H 0.97002 * 120.00172 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47327 * 59.99609 * 9 7 2 26 26 H 1.08994 * 109.47027 * 299.99623 * 9 7 2 27 27 H 1.09000 * 109.47104 * 59.99684 * 10 9 7 28 28 H 1.09002 * 109.46820 * 299.99594 * 10 9 7 29 29 H 0.96999 * 120.00065 * 0.02562 * 11 10 9 30 30 H 0.96999 * 119.99750 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47439 * 60.00439 * 15 14 12 32 32 H 1.08998 * 109.47458 * 300.00382 * 15 14 12 33 33 H 1.08998 * 109.46694 * 59.99942 * 16 15 14 34 34 H 1.08993 * 109.47169 * 300.00001 * 16 15 14 35 35 H 1.08999 * 109.47096 * 60.00086 * 17 16 15 36 36 H 1.08993 * 109.47215 * 299.99972 * 17 16 15 37 37 H 1.08000 * 122.70610 * 180.02562 * 21 20 19 38 38 H 1.07997 * 125.95156 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1870 -6.0979 0.0007 13 8 3.4028 -6.0978 0.0003 14 7 1.5131 -7.2652 0.0018 15 6 2.2457 -8.5338 0.0019 16 6 1.2515 -9.6968 0.0026 17 6 2.0166 -11.0218 0.0034 18 16 0.8404 -12.3976 0.0050 19 6 1.9606 -13.7577 0.0064 20 7 3.2541 -13.6554 0.0055 21 6 3.9419 -14.7832 0.0063 22 6 3.1956 -15.8881 0.0085 23 16 1.5016 -15.4046 0.0076 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.5430 -4.9308 0.0011 30 1 0.5432 -7.2652 0.0025 31 1 2.8730 -8.5911 0.8915 32 1 2.8718 -8.5920 -0.8884 33 1 0.6246 -9.6393 -0.8872 34 1 0.6252 -9.6389 0.8927 35 1 2.6433 -11.0790 0.8934 36 1 2.6432 -11.0800 -0.8865 37 1 5.0216 -14.8082 0.0060 38 1 3.5653 -16.9029 0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753225091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:59 Heat of formation + Delta-G solvation = -3.834437 kcal Electronic energy + Delta-G solvation = -19614.403158 eV Core-core repulsion = 16323.452027 eV Total energy + Delta-G solvation = -3290.951131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89242 -39.57644 -36.15158 -34.68293 -33.03170 -32.51701 -30.95228 -29.51687 -26.58756 -26.00498 -24.43399 -22.20385 -21.17936 -21.04659 -20.53690 -19.25630 -17.93249 -16.91644 -16.41223 -16.21787 -16.17732 -15.51670 -15.22646 -14.84185 -14.62243 -14.50631 -14.01521 -13.88701 -13.56285 -13.51003 -12.75780 -12.49104 -12.24738 -12.05717 -12.01633 -11.43921 -11.17797 -11.03649 -10.99538 -10.63454 -10.42724 -10.29185 -10.25546 -9.94665 -9.78910 -9.54146 -9.26016 -9.03334 -8.46636 -8.23419 -8.08070 -6.07488 -4.10143 0.10621 0.41918 1.07105 1.27250 1.63871 2.27398 3.04236 3.32926 3.36516 3.40406 3.60378 4.15289 4.36922 4.45712 4.46216 4.65418 4.70595 4.81142 4.99138 5.10339 5.17590 5.29559 5.45135 5.54725 5.73876 5.80353 6.31337 6.41784 6.57597 6.79596 7.01553 7.04585 7.23661 7.58328 7.65137 7.91561 8.27544 8.44486 8.94220 9.00980 9.54505 11.04093 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.058771 B = 0.001532 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.308270 B =18271.550740 C =18711.507279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.598 6.598 14 N -0.755 5.755 15 C 0.148 3.852 16 C -0.120 4.120 17 C -0.098 4.098 18 S -0.007 6.007 19 C 0.015 3.985 20 N -0.477 5.477 21 C 0.052 3.948 22 C -0.266 4.266 23 S 0.172 5.828 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.393 0.607 30 H 0.395 0.605 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.180 0.820 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -34.203 0.013 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.412 5.412 15 C 0.021 3.979 16 C -0.160 4.160 17 C -0.248 4.248 18 S 0.226 5.774 19 C -0.370 4.370 20 N -0.196 5.196 21 C -0.102 4.102 22 C -0.409 4.409 23 S 0.422 5.578 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.197 0.803 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.411 -33.979 0.012 34.008 hybrid contribution 1.890 0.721 -0.001 2.023 sum 0.480 -33.258 0.011 33.261 Atomic orbital electron populations 1.69946 1.06080 1.26943 1.50384 1.24989 0.94893 0.99380 0.94998 0.86566 0.79505 0.82639 0.78782 1.20116 1.21264 1.20118 1.21020 0.93252 0.90384 1.51373 0.92263 1.19326 0.94262 0.91074 0.97817 1.21596 0.95648 0.80402 1.00659 1.45532 1.09856 1.05323 1.78480 1.16049 0.85632 0.80471 0.78052 1.90894 1.11787 1.86667 1.58316 1.45071 1.09461 1.04662 1.82000 1.20981 0.93545 0.80579 1.02767 1.21581 0.98616 0.91578 1.04222 1.23466 0.99742 0.93673 1.07921 1.85777 1.07210 0.93537 1.90860 1.28424 0.98077 1.02917 1.07608 1.67013 1.03232 1.31241 1.18136 1.21821 1.01782 0.85714 1.00840 1.27066 0.95142 1.04738 1.13924 1.83968 1.07503 0.98300 1.68019 0.92826 0.95962 0.95949 0.92779 0.92776 0.77372 0.77190 0.91430 0.91437 0.90036 0.90042 0.88092 0.88090 0.80328 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -13.14 5.56 -65.22 -0.36 -13.50 16 12 C 0.70 12.29 8.57 -86.92 -0.74 11.55 16 13 O -0.60 -13.06 16.34 5.29 0.09 -12.97 16 14 N -0.75 -9.27 5.56 -65.23 -0.36 -9.63 16 15 C 0.15 1.55 5.67 -4.04 -0.02 1.52 16 16 C -0.12 -0.85 5.33 -26.73 -0.14 -1.00 16 17 C -0.10 -0.74 5.14 37.16 0.19 -0.55 16 18 S -0.01 -0.06 22.29 -107.50 -2.40 -2.45 16 19 C 0.02 0.13 7.46 51.88 0.39 0.52 16 20 N -0.48 -4.56 9.84 -14.78 -0.15 -4.70 16 21 C 0.05 0.38 11.34 -19.15 -0.22 0.16 16 22 C -0.27 -1.53 11.34 29.02 0.33 -1.20 16 23 S 0.17 1.13 23.20 -107.50 -2.49 -1.36 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.39 5.94 8.49 -40.82 -0.35 5.60 16 30 H 0.39 3.65 8.49 -40.82 -0.35 3.30 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -34.07 357.61 -10.67 -44.74 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.31 Total: 2.59 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.80 Total: 0.88 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.13 Total: -53.27 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -4.89 Total: -3.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.07 -10.67 -44.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753225091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.903 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds